Wall clock time and date at job start Tue Mar 31 2020 15:01:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.47186 * 2 1 4 4 C 1.52998 * 109.46619 * 120.00302 * 2 1 3 5 5 C 1.50704 * 109.46828 * 184.99705 * 4 2 1 6 6 C 1.38225 * 119.61676 * 124.99701 * 5 4 2 7 7 C 1.38630 * 119.16027 * 179.97438 * 6 5 4 8 8 C 1.38667 * 118.42252 * 0.02562 * 7 6 5 9 9 C 1.38180 * 119.16084 * 359.97438 * 8 7 6 10 10 N 1.31857 * 119.62024 * 304.72742 * 5 4 2 11 11 N 1.46500 * 109.46960 * 239.99788 * 2 1 3 12 12 C 1.34785 * 119.99683 * 85.00269 * 11 2 1 13 13 O 1.21578 * 120.00032 * 0.02562 * 12 11 2 14 14 N 1.34772 * 119.99810 * 179.97438 * 12 11 2 15 15 C 1.39458 * 119.99731 * 175.14641 * 14 12 11 16 16 C 1.38648 * 119.64746 * 185.22669 * 15 14 12 17 17 C 1.40825 * 118.67154 * 179.97438 * 16 15 14 18 18 C 1.41547 * 120.99234 * 179.97438 * 17 16 15 19 19 H 1.08004 * 119.99784 * 149.49070 * 18 17 16 20 20 C 1.40026 * 120.00190 * 329.49041 * 18 17 16 21 21 N 1.30746 * 119.99790 * 167.68567 * 20 18 17 22 22 Si 1.86800 * 120.00177 * 347.68769 * 20 18 17 23 23 H 1.48506 * 109.47175 * 92.44182 * 22 20 18 24 24 H 1.48498 * 109.47281 * 212.43958 * 22 20 18 25 25 H 1.48498 * 109.46836 * 332.44216 * 22 20 18 26 26 C 1.41158 * 118.00603 * 0.02562 * 17 16 15 27 27 C 1.36592 * 119.13120 * 0.02562 * 26 17 16 28 28 N 1.32069 * 121.25423 * 359.74042 * 27 26 17 29 29 H 1.09003 * 109.47059 * 300.00215 * 1 2 3 30 30 H 1.09006 * 109.46608 * 59.99669 * 1 2 3 31 31 H 1.08998 * 109.47478 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47290 * 304.99380 * 4 2 1 33 33 H 1.08995 * 109.47424 * 65.00252 * 4 2 1 34 34 H 1.08001 * 120.42008 * 359.96010 * 6 5 4 35 35 H 1.08000 * 120.78880 * 180.02562 * 7 6 5 36 36 H 1.08000 * 120.41743 * 180.02562 * 8 7 6 37 37 H 1.08010 * 119.61561 * 180.02562 * 9 8 7 38 38 H 0.96991 * 120.00634 * 265.00305 * 11 2 1 39 39 H 0.96998 * 120.00210 * 355.15799 * 14 12 11 40 40 H 1.07998 * 120.66162 * 0.02562 * 16 15 14 41 41 H 0.97000 * 119.99593 * 179.97438 * 21 20 18 42 42 H 1.08004 * 120.43417 * 180.02562 * 26 17 16 43 43 H 1.07995 * 119.36630 * 180.02562 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 3.5419 -0.6151 1.3127 6 6 4.1426 -0.0938 2.4432 7 6 5.5249 -0.0009 2.4917 8 6 6.2546 -0.4372 1.3962 9 6 5.5844 -0.9470 0.3006 10 7 4.2680 -1.0254 0.2914 11 7 2.0183 -0.6907 -1.1962 12 6 2.1471 -0.0182 -2.3572 13 8 1.8584 1.1615 -2.4116 14 7 2.5968 -0.6535 -3.4575 15 6 2.6343 0.0139 -4.6814 16 6 2.9945 -0.6768 -5.8284 17 6 3.0251 0.0172 -7.0534 18 6 3.3864 -0.6394 -8.2542 19 1 2.9660 -0.3148 -9.1947 20 6 4.2887 -1.7097 -8.2229 21 7 4.4406 -2.4677 -9.2773 22 14 5.2754 -2.0545 -6.6747 23 1 4.5464 -3.0358 -5.8314 24 1 6.6015 -2.6099 -7.0463 25 1 5.4625 -0.7920 -5.9156 26 6 2.6859 1.3874 -7.0477 27 6 2.3447 1.9830 -5.8667 28 7 2.3221 1.3003 -4.7364 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.6054 -0.2618 2.1369 33 1 1.7516 -1.7715 1.2055 34 1 3.5427 0.2372 3.2780 35 1 6.0218 0.4018 3.3620 36 1 7.3331 -0.3801 1.3997 37 1 6.1455 -1.2894 -0.5565 38 1 2.2490 -1.6317 -1.1527 39 1 2.8941 -1.5748 -3.3981 40 1 3.2458 -1.7261 -5.7834 41 1 5.0660 -3.2089 -9.2557 42 1 2.6960 1.9574 -7.9650 43 1 2.0841 3.0310 -5.8580 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871735440.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:01:26 Heat of formation + Delta-G solvation = 46.390959 kcal Electronic energy + Delta-G solvation = -26925.806182 eV Core-core repulsion = 23164.161781 eV Total energy + Delta-G solvation = -3761.644400 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.54038 -39.78174 -38.31022 -36.13731 -34.18616 -33.68758 -32.65373 -32.42737 -31.23295 -30.58819 -28.46463 -27.21038 -25.92446 -23.80611 -22.97058 -22.28773 -22.02690 -20.67998 -19.96845 -18.21284 -17.64142 -17.09566 -16.39864 -16.30900 -15.74897 -15.69178 -15.13406 -14.79433 -14.59288 -14.19170 -14.16723 -13.91857 -13.47550 -13.42125 -13.13001 -12.96701 -12.87867 -12.72916 -12.39874 -12.29176 -12.08380 -11.57668 -11.50308 -11.09490 -10.92607 -10.77699 -10.61139 -10.07627 -9.97911 -9.78912 -9.61580 -9.54214 -9.30495 -9.18479 -8.62997 -8.14659 -7.77900 -7.14469 -6.99366 -4.68463 0.88855 1.07491 2.49253 2.69661 3.05084 3.06988 3.16972 3.29040 3.58284 3.88945 3.93238 4.05362 4.34515 4.57194 4.63622 4.67657 4.74313 4.86921 4.91751 5.09505 5.17740 5.39900 5.42690 5.48015 5.52777 5.56293 5.68872 5.78095 5.87778 5.94404 6.03752 6.24882 6.34402 6.46104 6.47842 6.48860 6.63464 6.88166 7.01072 7.16937 7.33298 7.39767 7.72139 7.82911 8.03760 8.27535 8.39993 8.52011 8.71247 9.20183 9.58267 10.02263 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.014083 B = 0.003508 C = 0.003062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1987.794331 B = 7978.866842 C = 9142.850463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.174 3.826 3 H 0.084 0.916 4 C -0.079 4.079 5 C 0.130 3.870 6 C -0.173 4.173 7 C -0.075 4.075 8 C -0.180 4.180 9 C 0.106 3.894 10 N -0.468 5.468 11 N -0.731 5.731 12 C 0.697 3.303 13 O -0.537 6.537 14 N -0.672 5.672 15 C 0.390 3.610 16 C -0.324 4.324 17 C 0.130 3.870 18 C -0.439 4.439 19 H 0.095 0.905 20 C 0.085 3.915 21 N -0.807 5.807 22 Si 0.918 3.082 23 H -0.271 1.271 24 H -0.293 1.293 25 H -0.245 1.245 26 C -0.273 4.273 27 C 0.129 3.871 28 N -0.551 5.551 29 H 0.061 0.939 30 H 0.067 0.933 31 H 0.055 0.945 32 H 0.094 0.906 33 H 0.088 0.912 34 H 0.133 0.867 35 H 0.132 0.868 36 H 0.132 0.868 37 H 0.155 0.845 38 H 0.395 0.605 39 H 0.403 0.597 40 H 0.107 0.893 41 H 0.286 0.714 42 H 0.109 0.891 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.784 -1.404 23.263 23.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.068 3.932 3 H 0.102 0.898 4 C -0.117 4.117 5 C -0.007 4.007 6 C -0.192 4.192 7 C -0.101 4.101 8 C -0.200 4.200 9 C -0.052 4.052 10 N -0.177 5.177 11 N -0.388 5.388 12 C 0.397 3.603 13 O -0.409 6.409 14 N -0.320 5.320 15 C 0.161 3.839 16 C -0.350 4.350 17 C 0.122 3.878 18 C -0.469 4.469 19 H 0.113 0.887 20 C -0.135 4.135 21 N -0.432 5.432 22 Si 0.746 3.254 23 H -0.198 1.198 24 H -0.221 1.221 25 H -0.168 1.168 26 C -0.297 4.297 27 C -0.023 4.023 28 N -0.270 5.270 29 H 0.080 0.920 30 H 0.086 0.914 31 H 0.074 0.926 32 H 0.112 0.888 33 H 0.106 0.894 34 H 0.151 0.849 35 H 0.150 0.850 36 H 0.150 0.850 37 H 0.172 0.828 38 H 0.229 0.771 39 H 0.237 0.763 40 H 0.125 0.875 41 H 0.097 0.903 42 H 0.127 0.873 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -0.085 -0.383 23.144 23.147 hybrid contribution 1.622 -1.374 0.510 2.186 sum 1.537 -1.757 23.654 23.769 Atomic orbital electron populations 1.22223 0.95301 1.02024 1.02723 1.20511 0.93298 0.97027 0.82410 0.89757 1.20952 0.89040 1.02634 0.99108 1.21212 0.96354 0.93828 0.89351 1.21964 0.95525 1.02175 0.99580 1.21556 0.94057 0.96254 0.98282 1.22143 1.01473 1.01236 0.95118 1.22810 0.90233 0.94757 0.97362 1.67488 1.07244 1.15851 1.27163 1.45053 1.71899 1.13562 1.08309 1.16001 0.78953 0.85361 0.80016 1.90996 1.53617 1.13056 1.83195 1.42632 1.66825 1.15903 1.06620 1.17777 0.93813 0.89530 0.82764 1.21202 1.21167 0.99558 0.93048 1.17695 0.87347 0.91022 0.91770 1.19493 1.22190 1.10750 0.94499 0.88719 1.26170 0.96374 0.93087 0.97863 1.69619 1.29950 1.13058 1.30547 0.86222 0.77526 0.80385 0.81302 1.19760 1.22057 1.16804 1.21673 1.14193 0.95425 0.98397 1.21631 0.94777 0.98054 0.87826 1.67346 1.24851 1.06015 1.28830 0.91960 0.91437 0.92570 0.88766 0.89372 0.84931 0.85030 0.84965 0.82816 0.77115 0.76279 0.87531 0.90310 0.87309 0.85498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.74 9.48 37.16 0.35 -1.39 16 2 C 0.17 2.04 2.56 -67.93 -0.17 1.87 16 3 H 0.08 1.22 7.58 -51.93 -0.39 0.83 16 4 C -0.08 -0.66 5.19 -27.88 -0.14 -0.80 16 5 C 0.13 1.34 6.17 -82.58 -0.51 0.83 16 6 C -0.17 -1.48 9.71 -39.44 -0.38 -1.86 16 7 C -0.08 -0.62 10.18 -39.28 -0.40 -1.02 16 8 C -0.18 -1.61 10.11 -39.44 -0.40 -2.01 16 9 C 0.11 1.15 11.18 -17.55 -0.20 0.96 16 10 N -0.47 -5.66 8.58 -9.47 -0.08 -5.74 16 11 N -0.73 -10.20 3.85 -58.67 -0.23 -10.42 16 12 C 0.70 13.40 8.49 -86.91 -0.74 12.66 16 13 O -0.54 -12.55 14.26 5.30 0.08 -12.48 16 14 N -0.67 -13.30 5.40 -15.86 -0.09 -13.39 16 15 C 0.39 9.32 7.42 -154.68 -1.15 8.18 16 16 C -0.32 -7.93 6.95 -38.45 -0.27 -8.20 16 17 C 0.13 3.35 5.17 -106.55 -0.55 2.80 16 18 C -0.44 -11.80 9.67 -37.65 -0.36 -12.16 16 19 H 0.09 2.65 8.06 -52.48 -0.42 2.22 16 20 C 0.08 2.19 5.48 -17.34 -0.10 2.10 16 21 N -0.81 -21.18 13.92 55.55 0.77 -20.41 16 22 Si 0.92 20.62 24.43 -169.99 -4.15 16.47 16 23 H -0.27 -5.73 6.67 56.52 0.38 -5.35 16 24 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 25 H -0.24 -5.78 6.65 56.52 0.38 -5.41 16 26 C -0.27 -6.56 9.85 -39.07 -0.38 -6.94 16 27 C 0.13 3.02 11.10 -18.04 -0.20 2.82 16 28 N -0.55 -13.89 7.85 -12.76 -0.10 -13.99 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.09 0.55 7.87 -51.93 -0.41 0.14 16 33 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.13 0.79 7.95 -52.49 -0.42 0.37 16 35 H 0.13 0.73 8.06 -52.49 -0.42 0.30 16 36 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 37 H 0.15 1.48 8.06 -52.48 -0.42 1.06 16 38 H 0.39 4.72 8.24 -40.82 -0.34 4.38 16 39 H 0.40 6.64 8.71 -40.82 -0.36 6.28 16 40 H 0.11 2.51 4.43 -52.49 -0.23 2.27 16 41 H 0.29 6.79 8.29 -40.82 -0.34 6.45 16 42 H 0.11 2.40 8.06 -52.48 -0.42 1.98 16 43 H 0.13 2.58 8.06 -52.49 -0.42 2.16 16 LS Contribution 361.42 15.07 5.45 5.45 Total: -1.00 -34.02 361.42 -9.51 -43.53 By element: Atomic # 1 Polarization: 18.69 SS G_CDS: -5.56 Total: 13.13 kcal Atomic # 6 Polarization: 3.45 SS G_CDS: -5.60 Total: -2.15 kcal Atomic # 7 Polarization: -64.22 SS G_CDS: 0.28 Total: -63.94 kcal Atomic # 8 Polarization: -12.55 SS G_CDS: 0.08 Total: -12.48 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -4.15 Total: 16.47 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -34.02 -9.51 -43.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871735440.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.919 kcal (2) G-P(sol) polarization free energy of solvation -34.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.528 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds