Wall clock time and date at job start Tue Mar 31 2020 15:01:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.47186 * 2 1 4 4 C 1.52998 * 109.46619 * 120.00302 * 2 1 3 5 5 C 1.50704 * 109.46828 * 184.99705 * 4 2 1 6 6 C 1.38225 * 119.61676 * 124.99701 * 5 4 2 7 7 C 1.38630 * 119.16027 * 179.97438 * 6 5 4 8 8 C 1.38667 * 118.42252 * 0.02562 * 7 6 5 9 9 C 1.38180 * 119.16084 * 359.97438 * 8 7 6 10 10 N 1.31857 * 119.62024 * 304.72742 * 5 4 2 11 11 N 1.46500 * 109.46960 * 239.99788 * 2 1 3 12 12 C 1.34785 * 119.99683 * 85.00269 * 11 2 1 13 13 O 1.21578 * 120.00032 * 0.02562 * 12 11 2 14 14 N 1.34772 * 119.99810 * 179.97438 * 12 11 2 15 15 C 1.39458 * 119.99731 * 175.14641 * 14 12 11 16 16 C 1.38648 * 119.64746 * 185.22669 * 15 14 12 17 17 C 1.40825 * 118.67154 * 179.97438 * 16 15 14 18 18 C 1.41547 * 120.99234 * 179.97438 * 17 16 15 19 19 H 1.08004 * 119.99784 * 149.49070 * 18 17 16 20 20 C 1.40026 * 120.00190 * 329.49041 * 18 17 16 21 21 N 1.30746 * 119.99790 * 167.68567 * 20 18 17 22 22 Si 1.86800 * 120.00177 * 347.68769 * 20 18 17 23 23 H 1.48506 * 109.47175 * 92.44182 * 22 20 18 24 24 H 1.48498 * 109.47281 * 212.43958 * 22 20 18 25 25 H 1.48498 * 109.46836 * 332.44216 * 22 20 18 26 26 C 1.41158 * 118.00603 * 0.02562 * 17 16 15 27 27 C 1.36592 * 119.13120 * 0.02562 * 26 17 16 28 28 N 1.32069 * 121.25423 * 359.74042 * 27 26 17 29 29 H 1.09003 * 109.47059 * 300.00215 * 1 2 3 30 30 H 1.09006 * 109.46608 * 59.99669 * 1 2 3 31 31 H 1.08998 * 109.47478 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47290 * 304.99380 * 4 2 1 33 33 H 1.08995 * 109.47424 * 65.00252 * 4 2 1 34 34 H 1.08001 * 120.42008 * 359.96010 * 6 5 4 35 35 H 1.08000 * 120.78880 * 180.02562 * 7 6 5 36 36 H 1.08000 * 120.41743 * 180.02562 * 8 7 6 37 37 H 1.08010 * 119.61561 * 180.02562 * 9 8 7 38 38 H 0.96991 * 120.00634 * 265.00305 * 11 2 1 39 39 H 0.96998 * 120.00210 * 355.15799 * 14 12 11 40 40 H 1.07998 * 120.66162 * 0.02562 * 16 15 14 41 41 H 0.97000 * 119.99593 * 179.97438 * 21 20 18 42 42 H 1.08004 * 120.43417 * 180.02562 * 26 17 16 43 43 H 1.07995 * 119.36630 * 180.02562 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 3.5419 -0.6151 1.3127 6 6 4.1426 -0.0938 2.4432 7 6 5.5249 -0.0009 2.4917 8 6 6.2546 -0.4372 1.3962 9 6 5.5844 -0.9470 0.3006 10 7 4.2680 -1.0254 0.2914 11 7 2.0183 -0.6907 -1.1962 12 6 2.1471 -0.0182 -2.3572 13 8 1.8584 1.1615 -2.4116 14 7 2.5968 -0.6535 -3.4575 15 6 2.6343 0.0139 -4.6814 16 6 2.9945 -0.6768 -5.8284 17 6 3.0251 0.0172 -7.0534 18 6 3.3864 -0.6394 -8.2542 19 1 2.9660 -0.3148 -9.1947 20 6 4.2887 -1.7097 -8.2229 21 7 4.4406 -2.4677 -9.2773 22 14 5.2754 -2.0545 -6.6747 23 1 4.5464 -3.0358 -5.8314 24 1 6.6015 -2.6099 -7.0463 25 1 5.4625 -0.7920 -5.9156 26 6 2.6859 1.3874 -7.0477 27 6 2.3447 1.9830 -5.8667 28 7 2.3221 1.3003 -4.7364 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.6054 -0.2618 2.1369 33 1 1.7516 -1.7715 1.2055 34 1 3.5427 0.2372 3.2780 35 1 6.0218 0.4018 3.3620 36 1 7.3331 -0.3801 1.3997 37 1 6.1455 -1.2894 -0.5565 38 1 2.2490 -1.6317 -1.1527 39 1 2.8941 -1.5748 -3.3981 40 1 3.2458 -1.7261 -5.7834 41 1 5.0660 -3.2089 -9.2557 42 1 2.6960 1.9574 -7.9650 43 1 2.0841 3.0310 -5.8580 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871735440.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:01:25 Heat of formation + Delta-G solvation = 24.287036 kcal Electronic energy + Delta-G solvation = -26926.764680 eV Core-core repulsion = 23164.161781 eV Total energy + Delta-G solvation = -3762.602898 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.59529 -41.04412 -39.97532 -37.28450 -36.00330 -35.49114 -33.51888 -33.24630 -33.13052 -31.69066 -30.12268 -27.92709 -27.89758 -24.59463 -24.17932 -24.06057 -23.12080 -21.87431 -21.50708 -19.78894 -19.41283 -18.02892 -17.70878 -17.39012 -17.08903 -16.60762 -16.44063 -16.38647 -16.23143 -15.93899 -15.22651 -14.97915 -14.86513 -14.74538 -14.67384 -14.46873 -14.02607 -13.75937 -13.51889 -13.26683 -12.97088 -12.87920 -12.76844 -12.63584 -12.59580 -12.30323 -12.00342 -11.82938 -11.52019 -11.31550 -11.10978 -10.74798 -10.38419 -10.12359 -9.92848 -9.77851 -9.65693 -8.96836 -8.91927 -6.72829 0.21124 0.42076 0.62581 0.77495 1.22993 1.38376 1.47010 1.66917 2.09352 2.31753 2.72613 2.87989 3.20500 3.39111 3.54764 3.72495 3.97967 4.03397 4.07477 4.21844 4.28111 4.35370 4.41664 4.46792 4.59650 4.68532 4.71422 4.73433 4.77960 4.83137 4.90027 4.92176 5.10524 5.13917 5.26609 5.30595 5.31839 5.37411 5.55576 5.69989 5.73939 5.83266 5.92132 6.13110 6.31291 6.53420 6.69403 7.03129 7.12145 7.61782 7.83990 8.11251 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.014083 B = 0.003508 C = 0.003062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1987.794331 B = 7978.866842 C = 9142.850463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.171 3.829 3 H 0.054 0.946 4 C -0.067 4.067 5 C 0.107 3.893 6 C -0.172 4.172 7 C -0.080 4.080 8 C -0.183 4.183 9 C 0.076 3.924 10 N -0.499 5.499 11 N -0.709 5.709 12 C 0.694 3.306 13 O -0.582 6.582 14 N -0.666 5.666 15 C 0.387 3.613 16 C -0.329 4.329 17 C 0.116 3.884 18 C -0.468 4.468 19 H 0.067 0.933 20 C 0.052 3.948 21 N -0.837 5.837 22 Si 0.969 3.031 23 H -0.247 1.247 24 H -0.276 1.276 25 H -0.265 1.265 26 C -0.283 4.283 27 C 0.129 3.871 28 N -0.571 5.571 29 H 0.090 0.910 30 H 0.028 0.972 31 H 0.073 0.927 32 H 0.128 0.872 33 H 0.103 0.897 34 H 0.163 0.837 35 H 0.161 0.839 36 H 0.151 0.849 37 H 0.154 0.846 38 H 0.407 0.593 39 H 0.418 0.582 40 H 0.116 0.884 41 H 0.298 0.702 42 H 0.121 0.879 43 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.988 -2.121 26.931 27.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.066 3.934 3 H 0.072 0.928 4 C -0.105 4.105 5 C -0.031 4.031 6 C -0.191 4.191 7 C -0.106 4.106 8 C -0.202 4.202 9 C -0.081 4.081 10 N -0.208 5.208 11 N -0.365 5.365 12 C 0.394 3.606 13 O -0.457 6.457 14 N -0.315 5.315 15 C 0.157 3.843 16 C -0.354 4.354 17 C 0.107 3.893 18 C -0.499 4.499 19 H 0.086 0.914 20 C -0.164 4.164 21 N -0.463 5.463 22 Si 0.793 3.207 23 H -0.172 1.172 24 H -0.203 1.203 25 H -0.189 1.189 26 C -0.306 4.306 27 C -0.023 4.023 28 N -0.291 5.291 29 H 0.109 0.891 30 H 0.048 0.952 31 H 0.092 0.908 32 H 0.146 0.854 33 H 0.122 0.878 34 H 0.180 0.820 35 H 0.178 0.822 36 H 0.169 0.831 37 H 0.171 0.829 38 H 0.243 0.757 39 H 0.255 0.745 40 H 0.134 0.866 41 H 0.109 0.891 42 H 0.139 0.861 43 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 0.117 -1.170 26.847 26.873 hybrid contribution 1.522 -1.067 -0.549 1.938 sum 1.639 -2.237 26.298 26.444 Atomic orbital electron populations 1.22154 0.94132 1.02970 1.02253 1.20702 0.94112 0.95812 0.82822 0.92814 1.20971 0.88025 1.03359 0.98174 1.21603 0.97183 0.94503 0.89815 1.22335 0.96113 1.00881 0.99781 1.21979 0.94232 0.95552 0.98856 1.22399 1.02609 1.00447 0.94771 1.22993 0.90415 0.96248 0.98450 1.67413 1.07921 1.17015 1.28484 1.44981 1.70292 1.13951 1.07305 1.16191 0.78591 0.85005 0.80843 1.90960 1.55580 1.15127 1.84018 1.42563 1.66705 1.16490 1.05749 1.17982 0.92929 0.89354 0.84078 1.21270 1.21295 1.00009 0.92875 1.17888 0.87536 0.91893 0.91970 1.19480 1.23986 1.12432 0.93974 0.91437 1.26807 0.96638 0.92549 1.00448 1.69629 1.30916 1.13816 1.31955 0.85456 0.77210 0.79867 0.78204 1.17151 1.20311 1.18921 1.21870 1.14292 0.95129 0.99349 1.22100 0.93700 0.99356 0.87155 1.67475 1.25243 1.06801 1.29573 0.89089 0.95240 0.90843 0.85375 0.87835 0.81991 0.82169 0.83085 0.82914 0.75661 0.74504 0.86612 0.89132 0.86051 0.82545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.01 9.48 71.98 0.68 -2.32 16 2 C 0.17 3.74 2.56 44.99 0.12 3.85 16 3 H 0.05 1.54 7.58 -2.39 -0.02 1.52 16 4 C -0.07 -0.91 5.19 29.85 0.15 -0.75 16 5 C 0.11 1.96 6.17 42.55 0.26 2.22 16 6 C -0.17 -2.40 9.71 22.36 0.22 -2.18 16 7 C -0.08 -1.08 10.18 22.47 0.23 -0.85 16 8 C -0.18 -2.96 10.11 22.36 0.23 -2.73 16 9 C 0.08 1.60 11.18 84.67 0.95 2.55 16 10 N -0.50 -11.48 8.58 -183.88 -1.58 -13.06 16 11 N -0.71 -18.98 3.85 -457.81 -1.76 -20.74 16 12 C 0.69 26.48 8.49 179.05 1.52 28.00 16 13 O -0.58 -27.47 14.26 -3.96 -0.06 -27.53 16 14 N -0.67 -25.95 5.40 -322.37 -1.74 -27.69 16 15 C 0.39 18.41 7.42 132.76 0.99 19.39 16 16 C -0.33 -16.05 6.95 23.00 0.16 -15.89 16 17 C 0.12 6.04 5.17 -21.11 -0.11 5.94 16 18 C -0.47 -25.92 9.67 23.52 0.23 -25.70 16 19 H 0.07 3.98 8.06 -2.91 -0.02 3.95 16 20 C 0.05 2.74 5.48 85.29 0.47 3.21 16 21 N -0.84 -44.41 13.92 21.84 0.30 -44.10 16 22 Si 0.97 41.93 24.43 68.60 1.68 43.60 16 23 H -0.25 -9.63 6.67 99.48 0.66 -8.96 16 24 H -0.28 -11.16 7.11 99.48 0.71 -10.45 16 25 H -0.26 -12.29 6.65 99.48 0.66 -11.62 16 26 C -0.28 -13.70 9.85 22.60 0.22 -13.48 16 27 C 0.13 6.00 11.10 84.27 0.94 6.94 16 28 N -0.57 -28.76 7.85 -194.27 -1.53 -30.29 16 29 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.03 0.79 8.14 -2.38 -0.02 0.77 16 31 H 0.07 1.15 8.14 -2.39 -0.02 1.14 16 32 H 0.13 0.88 7.87 -2.39 -0.02 0.86 16 33 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.16 1.19 7.95 -2.91 -0.02 1.17 16 35 H 0.16 1.15 8.06 -2.91 -0.02 1.13 16 36 H 0.15 1.72 8.06 -2.91 -0.02 1.69 16 37 H 0.15 2.99 8.06 -2.91 -0.02 2.96 16 38 H 0.41 9.04 8.24 -92.72 -0.76 8.27 16 39 H 0.42 13.24 8.71 -92.71 -0.81 12.43 16 40 H 0.12 5.33 4.43 -2.91 -0.01 5.32 16 41 H 0.30 14.07 8.29 -92.71 -0.77 13.31 16 42 H 0.12 5.43 8.06 -2.91 -0.02 5.40 16 43 H 0.16 6.20 8.06 -2.91 -0.02 6.18 16 Total: -1.00 -76.23 361.42 1.96 -74.27 By element: Atomic # 1 Polarization: 37.96 SS G_CDS: -0.60 Total: 37.36 kcal Atomic # 6 Polarization: 0.94 SS G_CDS: 7.24 Total: 8.18 kcal Atomic # 7 Polarization: -129.58 SS G_CDS: -6.30 Total: -135.88 kcal Atomic # 8 Polarization: -27.47 SS G_CDS: -0.06 Total: -27.53 kcal Atomic # 14 Polarization: 41.93 SS G_CDS: 1.68 Total: 43.60 kcal Total: -76.23 1.96 -74.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871735440.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.556 kcal (2) G-P(sol) polarization free energy of solvation -76.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.269 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds