Wall clock time and date at job start Tue Mar 31 2020 14:32:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.43339 * 2 1 4 4 C 1.53026 * 109.42778 * 240.15409 * 2 1 3 5 5 C 1.53371 * 109.75466 * 168.21619 * 4 2 1 6 6 C 1.50949 * 108.20220 * 50.66921 * 5 4 2 7 7 N 1.30130 * 128.28918 * 163.23504 * 6 5 4 8 8 N 1.40308 * 108.12737 * 180.14568 * 7 6 5 9 9 H 0.97003 * 126.00882 * 179.97438 * 8 7 6 10 10 C 1.35210 * 107.99135 * 359.96295 * 8 7 6 11 11 C 1.34567 * 107.61420 * 359.96041 * 10 8 7 12 12 C 1.50881 * 128.32501 * 180.11546 * 11 10 8 13 13 H 1.08995 * 109.75754 * 283.04353 * 12 11 10 14 14 C 1.50695 * 109.71847 * 43.67759 * 12 11 10 15 15 O 1.21276 * 120.00318 * 118.74029 * 14 12 11 16 16 N 1.34779 * 120.00165 * 298.73592 * 14 12 11 17 17 C 1.39466 * 120.00394 * 185.68362 * 16 14 12 18 18 C 1.38596 * 119.58371 * 174.35254 * 17 16 14 19 19 C 1.40803 * 118.79759 * 179.97438 * 18 17 16 20 20 C 1.41544 * 120.99838 * 180.02562 * 19 18 17 21 21 H 1.08008 * 119.99825 * 338.34297 * 20 19 18 22 22 C 1.40030 * 120.00209 * 158.34560 * 20 19 18 23 23 N 1.30739 * 120.00195 * 328.83904 * 22 20 19 24 24 Si 1.86796 * 120.00061 * 148.84039 * 22 20 19 25 25 H 1.48499 * 109.47561 * 179.97438 * 24 22 20 26 26 H 1.48506 * 109.47224 * 299.99958 * 24 22 20 27 27 H 1.48509 * 109.47306 * 59.99781 * 24 22 20 28 28 C 1.41172 * 118.00876 * 0.27721 * 19 18 17 29 29 C 1.37593 * 119.01331 * 359.43033 * 28 19 18 30 30 N 1.32075 * 121.10949 * 0.58532 * 29 28 19 31 31 H 1.09003 * 109.46692 * 300.10332 * 1 2 3 32 32 H 1.08997 * 109.47070 * 60.09459 * 1 2 3 33 33 H 1.08993 * 109.47368 * 180.10661 * 1 2 3 34 34 H 1.08994 * 109.42644 * 288.31128 * 4 2 1 35 35 H 1.09001 * 109.42339 * 48.19176 * 4 2 1 36 36 H 1.08999 * 109.71683 * 170.33736 * 5 4 2 37 37 H 1.08992 * 109.72167 * 290.94738 * 5 4 2 38 38 H 1.07992 * 126.18691 * 179.97438 * 10 8 7 39 39 H 0.97000 * 119.99874 * 5.68737 * 16 14 12 40 40 H 1.08000 * 120.59509 * 0.02562 * 18 17 16 41 41 H 0.96999 * 119.99553 * 354.16218 * 23 22 20 42 42 H 1.08005 * 120.49532 * 179.70542 * 28 19 18 43 43 H 1.08006 * 119.44456 * 180.27509 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8926 1.0279 0.0000 4 6 2.0390 -0.7182 -1.2517 5 6 3.5440 -0.4719 -1.4148 6 6 4.2194 -0.7948 -0.1040 7 7 5.4826 -1.0122 0.1201 8 7 5.6442 -1.2761 1.4886 9 1 6.4817 -1.4733 1.9364 10 6 4.4272 -1.2069 2.0737 11 6 3.5307 -0.9103 1.1150 12 6 2.0403 -0.7210 1.2540 13 1 1.5524 -1.6916 1.3442 14 6 1.7451 0.1117 2.4748 15 8 1.1815 1.1793 2.3589 16 7 2.1075 -0.3299 3.6956 17 6 1.7309 0.3813 4.8346 18 6 2.0056 -0.1404 6.0889 19 6 1.6185 0.5918 7.2277 20 6 1.8763 0.1032 8.5308 21 1 2.0435 -0.9522 8.6886 22 6 1.9147 0.9880 9.6155 23 7 2.3186 2.2191 9.4409 24 14 1.3889 0.4093 11.3119 25 1 1.5219 1.5276 12.2798 26 1 -0.0259 -0.0399 11.2653 27 1 2.2530 -0.7203 11.7396 28 6 0.9606 1.8252 7.0307 29 6 0.7366 2.2645 5.7462 30 7 1.1158 1.5473 4.7039 31 1 -0.3633 0.5155 0.8891 32 1 -0.3633 0.5123 -0.8908 33 1 -0.3634 -1.0276 0.0019 34 1 1.8550 -1.7882 -1.1558 35 1 1.5133 -0.3372 -2.1273 36 1 3.9390 -1.1160 -2.2004 37 1 3.7200 0.5724 -1.6724 38 1 4.2135 -1.3614 3.1210 39 1 2.6303 -1.1424 3.7819 40 1 2.5082 -1.0908 6.1910 41 1 2.6713 2.4964 8.5809 42 1 0.6419 2.4174 7.8758 43 1 0.2379 3.2093 5.5875 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879181171.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:32:57 Heat of formation + Delta-G solvation = 39.519240 kcal Electronic energy + Delta-G solvation = -27320.091345 eV Core-core repulsion = 23558.148964 eV Total energy + Delta-G solvation = -3761.942381 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.75787 -41.24073 -39.86170 -37.80869 -36.48474 -35.48311 -33.62107 -32.47644 -32.27503 -30.59666 -30.27770 -27.85627 -27.53530 -25.05501 -23.98713 -23.87463 -22.32654 -21.80558 -21.28306 -20.07915 -19.83252 -18.79568 -18.37739 -17.61408 -16.51829 -16.36861 -16.24482 -16.19517 -15.77752 -15.73162 -15.28056 -15.06084 -14.95006 -14.65219 -14.42507 -14.18475 -13.92936 -13.72551 -13.64374 -13.22373 -12.93000 -12.86899 -12.41571 -12.38978 -12.09686 -11.99483 -11.88445 -11.78864 -11.57985 -11.50689 -11.39946 -10.99676 -10.85622 -10.42407 -10.21098 -9.75541 -9.48171 -9.32355 -8.94887 -6.69855 0.61094 0.81590 0.91574 1.51608 1.52873 1.65665 1.80761 1.83183 1.91436 2.16797 2.30140 2.68616 3.33707 3.57321 3.62644 3.67921 3.77213 3.99348 4.08913 4.26336 4.33683 4.43780 4.51009 4.59517 4.63166 4.70246 4.71044 4.76216 4.83600 4.87598 4.94934 5.00301 5.11466 5.15617 5.28105 5.31984 5.41416 5.49535 5.52851 5.53877 5.59835 5.69875 6.04904 6.13637 6.32109 6.48518 6.58489 6.62058 6.77949 7.27458 7.74570 7.88807 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.020525 B = 0.003009 C = 0.002749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.886947 B = 9304.311303 C =10182.304690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.068 4.068 3 H 0.055 0.945 4 C -0.099 4.099 5 C -0.041 4.041 6 C 0.086 3.914 7 N -0.313 5.313 8 N -0.473 5.473 9 H 0.453 0.547 10 C 0.069 3.931 11 C -0.249 4.249 12 C -0.009 4.009 13 H 0.125 0.875 14 C 0.505 3.495 15 O -0.510 6.510 16 N -0.653 5.653 17 C 0.360 3.640 18 C -0.324 4.324 19 C 0.106 3.894 20 C -0.539 4.539 21 H 0.085 0.915 22 C 0.012 3.988 23 N -0.793 5.793 24 Si 1.116 2.884 25 H -0.272 1.272 26 H -0.264 1.264 27 H -0.252 1.252 28 C -0.300 4.300 29 C 0.122 3.878 30 N -0.582 5.582 31 H 0.034 0.966 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.081 0.919 35 H 0.099 0.901 36 H 0.102 0.898 37 H 0.086 0.914 38 H 0.187 0.813 39 H 0.419 0.581 40 H 0.121 0.879 41 H 0.285 0.715 42 H 0.100 0.900 43 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.673 -10.406 -15.262 18.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.087 4.087 3 H 0.074 0.926 4 C -0.137 4.137 5 C -0.080 4.080 6 C -0.083 4.083 7 N -0.136 5.136 8 N -0.183 5.183 9 H 0.299 0.701 10 C -0.079 4.079 11 C -0.261 4.261 12 C -0.031 4.031 13 H 0.142 0.858 14 C 0.292 3.708 15 O -0.382 6.382 16 N -0.302 5.302 17 C 0.133 3.867 18 C -0.349 4.349 19 C 0.098 3.902 20 C -0.568 4.568 21 H 0.103 0.897 22 C -0.208 4.208 23 N -0.414 5.414 24 Si 0.932 3.068 25 H -0.197 1.197 26 H -0.189 1.189 27 H -0.176 1.176 28 C -0.324 4.324 29 C -0.030 4.030 30 N -0.303 5.303 31 H 0.053 0.947 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.100 0.900 35 H 0.117 0.883 36 H 0.120 0.880 37 H 0.104 0.896 38 H 0.204 0.796 39 H 0.258 0.742 40 H 0.139 0.861 41 H 0.097 0.903 42 H 0.118 0.882 43 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 3.068 -8.847 -15.285 17.925 hybrid contribution 0.500 -0.742 0.452 1.003 sum 3.568 -9.589 -14.833 18.019 Atomic orbital electron populations 1.21841 0.94229 1.02295 1.01953 1.20949 0.96233 0.98888 0.92648 0.92603 1.21617 0.93385 1.01629 0.97056 1.20322 0.94528 1.02967 0.90211 1.22780 0.90205 0.97706 0.97580 1.76956 1.18628 1.24220 0.93798 1.46329 1.09024 1.57133 1.05788 0.70062 1.22386 0.85833 1.00039 0.99603 1.19776 0.95483 1.17064 0.93769 1.19834 0.91805 0.99655 0.91839 0.85773 1.21457 0.78023 0.86828 0.84502 1.90752 1.39312 1.22518 1.85580 1.43695 1.54728 1.27722 1.04017 1.18356 0.92899 0.89775 0.85659 1.21258 1.17419 1.05560 0.90712 1.17927 0.87682 0.90907 0.93646 1.20806 1.45506 0.97991 0.92471 0.89710 1.28553 0.90619 0.92248 1.09406 1.70548 1.23058 1.19131 1.28629 0.83025 0.78257 0.76851 0.68639 1.19668 1.18863 1.17596 1.21930 1.11468 1.01940 0.97078 1.22123 0.95375 0.97561 0.87946 1.67411 1.21298 1.07833 1.33750 0.94678 0.91082 0.91281 0.90003 0.88260 0.87954 0.89557 0.79609 0.74170 0.86058 0.90326 0.88221 0.84157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.21 8.95 71.98 0.64 -2.57 16 2 C -0.07 -1.51 1.77 -10.65 -0.02 -1.53 16 3 H 0.06 1.55 7.75 -2.39 -0.02 1.53 16 4 C -0.10 -1.44 5.17 30.73 0.16 -1.28 16 5 C -0.04 -0.68 6.31 30.05 0.19 -0.49 16 6 C 0.09 1.97 7.10 43.44 0.31 2.27 16 7 N -0.31 -7.68 12.68 -47.13 -0.60 -8.28 16 8 N -0.47 -9.65 7.37 -57.88 -0.43 -10.07 16 9 H 0.45 6.36 8.96 -213.18 -1.91 4.45 16 10 C 0.07 1.47 11.01 83.33 0.92 2.39 16 11 C -0.25 -5.85 5.41 -20.10 -0.11 -5.96 16 12 C -0.01 -0.22 2.34 -12.10 -0.03 -0.25 16 13 H 0.12 2.41 8.13 -2.39 -0.02 2.39 16 14 C 0.51 17.46 6.76 87.66 0.59 18.05 16 15 O -0.51 -22.34 12.56 -3.02 -0.04 -22.38 16 16 N -0.65 -22.59 4.95 -308.66 -1.53 -24.12 16 17 C 0.36 16.40 7.41 132.75 0.98 17.38 16 18 C -0.32 -15.13 9.73 22.98 0.22 -14.91 16 19 C 0.11 5.54 5.35 -21.12 -0.11 5.43 16 20 C -0.54 -27.39 9.00 23.52 0.21 -27.18 16 21 H 0.08 4.10 8.01 -2.91 -0.02 4.08 16 22 C 0.01 0.57 4.86 85.29 0.41 0.99 16 23 N -0.79 -41.03 12.31 21.84 0.27 -40.76 16 24 Si 1.12 40.27 30.03 68.60 2.06 42.33 16 25 H -0.27 -9.74 7.11 99.48 0.71 -9.03 16 26 H -0.26 -9.14 7.11 99.48 0.71 -8.43 16 27 H -0.25 -8.16 7.11 99.48 0.71 -7.45 16 28 C -0.30 -15.65 8.20 22.84 0.19 -15.46 16 29 C 0.12 6.09 11.15 84.50 0.94 7.04 16 30 N -0.58 -29.42 7.86 -193.53 -1.52 -30.94 16 31 H 0.03 1.05 6.40 -2.39 -0.02 1.03 16 32 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.08 1.01 8.10 -2.39 -0.02 0.99 16 35 H 0.10 1.04 8.09 -2.39 -0.02 1.02 16 36 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.19 3.30 5.89 -2.91 -0.02 3.28 16 39 H 0.42 10.88 6.18 -92.71 -0.57 10.31 16 40 H 0.12 4.98 8.06 -2.91 -0.02 4.96 16 41 H 0.28 15.52 7.05 -92.71 -0.65 14.87 16 42 H 0.10 5.32 6.60 -2.91 -0.02 5.30 16 43 H 0.14 6.31 8.06 -2.91 -0.02 6.29 16 Total: -1.00 -71.96 349.43 2.43 -69.53 By element: Atomic # 1 Polarization: 42.06 SS G_CDS: -1.29 Total: 40.77 kcal Atomic # 6 Polarization: -21.58 SS G_CDS: 5.51 Total: -16.08 kcal Atomic # 7 Polarization: -110.37 SS G_CDS: -3.80 Total: -114.17 kcal Atomic # 8 Polarization: -22.34 SS G_CDS: -0.04 Total: -22.38 kcal Atomic # 14 Polarization: 40.27 SS G_CDS: 2.06 Total: 42.33 kcal Total: -71.96 2.43 -69.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879181171.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.051 kcal (2) G-P(sol) polarization free energy of solvation -71.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.532 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds