Wall clock time and date at job start Tue Mar 31 2020 14:33:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.38663 * 2 1 4 4 C 1.53115 * 109.48543 * 119.89470 * 2 1 3 5 5 C 1.53382 * 109.76856 * 191.78784 * 4 2 1 6 6 C 1.50953 * 108.20051 * 309.34876 * 5 4 2 7 7 N 1.30125 * 128.28081 * 196.82085 * 6 5 4 8 8 N 1.40318 * 108.12242 * 179.69812 * 7 6 5 9 9 H 0.96999 * 126.00294 * 180.02562 * 8 7 6 10 10 C 1.35196 * 107.99265 * 0.04932 * 8 7 6 11 11 C 1.34576 * 107.61675 * 0.03085 * 10 8 7 12 12 C 1.50885 * 128.32477 * 179.86334 * 11 10 8 13 13 H 1.08996 * 109.71959 * 316.28514 * 12 11 10 14 14 C 1.50701 * 109.71553 * 76.89256 * 12 11 10 15 15 O 1.21277 * 120.00181 * 91.09099 * 14 12 11 16 16 N 1.34777 * 120.00001 * 271.08863 * 14 12 11 17 17 C 1.39466 * 119.99899 * 184.32587 * 16 14 12 18 18 C 1.38600 * 119.57806 * 174.81060 * 17 16 14 19 19 C 1.40811 * 118.79484 * 179.70365 * 18 17 16 20 20 C 1.41538 * 121.00026 * 180.26814 * 19 18 17 21 21 H 1.07998 * 120.00696 * 210.15639 * 20 19 18 22 22 C 1.40036 * 119.99312 * 30.15296 * 20 19 18 23 23 N 1.30739 * 120.00763 * 7.92390 * 22 20 19 24 24 Si 1.86808 * 119.99613 * 187.92255 * 22 20 19 25 25 H 1.48498 * 109.47469 * 59.99949 * 24 22 20 26 26 H 1.48497 * 109.47081 * 180.02562 * 24 22 20 27 27 H 1.48503 * 109.46996 * 299.99924 * 24 22 20 28 28 C 1.41172 * 118.00665 * 0.51096 * 19 18 17 29 29 C 1.37592 * 119.01649 * 359.50919 * 28 19 18 30 30 N 1.32079 * 121.10921 * 0.22781 * 29 28 19 31 31 H 1.09001 * 109.47359 * 187.48971 * 1 2 3 32 32 H 1.09005 * 109.47332 * 307.48721 * 1 2 3 33 33 H 1.08998 * 109.47326 * 67.48507 * 1 2 3 34 34 H 1.08995 * 109.41983 * 71.69830 * 4 2 1 35 35 H 1.08994 * 109.36605 * 311.84664 * 4 2 1 36 36 H 1.08994 * 109.71778 * 189.67363 * 5 4 2 37 37 H 1.08999 * 109.74985 * 69.04301 * 5 4 2 38 38 H 1.07996 * 126.19179 * 180.02562 * 10 8 7 39 39 H 0.96999 * 119.99884 * 4.32384 * 16 14 12 40 40 H 1.07998 * 120.60324 * 359.97438 * 18 17 16 41 41 H 0.96997 * 120.00449 * 179.97438 * 23 22 20 42 42 H 1.08001 * 120.49501 * 179.78533 * 28 19 18 43 43 H 1.08001 * 119.44987 * 180.25850 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8918 1.0282 0.0000 4 6 2.0407 -0.7194 1.2514 5 6 3.5458 -0.4726 1.4137 6 6 4.2204 -0.7937 0.1020 7 7 5.4835 -1.0111 -0.1229 8 7 5.6438 -1.2763 -1.4914 9 1 6.4810 -1.4739 -1.9397 10 6 4.4265 -1.2076 -2.0755 11 6 3.5307 -0.9101 -1.1163 12 6 2.0402 -0.7205 -1.2543 13 1 1.8263 -0.1181 -2.1371 14 6 1.3663 -2.0627 -1.3792 15 8 0.9749 -2.6394 -0.3868 16 7 1.1987 -2.6221 -2.5939 17 6 0.4958 -3.8202 -2.7188 18 6 0.2350 -4.3321 -3.9801 19 6 -0.4705 -5.5461 -4.0868 20 6 -0.7571 -6.1138 -5.3513 21 1 -1.6462 -6.7120 -5.4857 22 6 0.1122 -5.8998 -6.4281 23 7 1.2623 -5.3096 -6.2326 24 14 -0.3716 -6.4578 -8.1440 25 1 -1.6242 -5.7728 -8.5526 26 1 0.7133 -6.1177 -9.0993 27 1 -0.5881 -7.9269 -8.1441 28 6 -0.8878 -6.1773 -2.8951 29 6 -0.5827 -5.5921 -1.6877 30 7 0.0862 -4.4547 -1.6303 31 1 -0.3634 -1.0189 0.1340 32 1 -0.3634 0.6254 0.8155 33 1 -0.3634 0.3935 -0.9493 34 1 1.8573 -1.7895 1.1545 35 1 1.5146 -0.3392 2.1269 36 1 3.9417 -1.1174 2.1983 37 1 3.7221 0.5715 1.6720 38 1 4.2118 -1.3631 -3.1224 39 1 1.5668 -2.1914 -3.3812 40 1 0.5706 -3.8116 -4.8649 41 1 1.8645 -5.1618 -6.9785 42 1 -1.4346 -7.1080 -2.9302 43 1 -0.8949 -6.0711 -0.7715 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000879181172.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:01 Heat of formation + Delta-G solvation = 67.058037 kcal Electronic energy + Delta-G solvation = -27659.522136 eV Core-core repulsion = 23898.773927 eV Total energy + Delta-G solvation = -3760.748209 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.63950 -39.67957 -38.15403 -36.25055 -34.24264 -33.71149 -32.57279 -31.12229 -30.52117 -29.60423 -28.61165 -26.46830 -25.97640 -23.92903 -22.42732 -21.95044 -20.83527 -20.69207 -19.79875 -18.80268 -17.83698 -17.64107 -16.37243 -15.89682 -15.20808 -15.03811 -14.85828 -14.73231 -14.22283 -14.15838 -13.83794 -13.71357 -13.41118 -13.04950 -12.86136 -12.65625 -12.59566 -12.56657 -12.16007 -11.72872 -11.45170 -11.28354 -11.22998 -11.09829 -10.92464 -10.87919 -10.55504 -10.27968 -10.18932 -10.14291 -9.65632 -9.42404 -9.37770 -9.20626 -8.41997 -7.94830 -7.67383 -7.03476 -6.75835 -4.64061 1.87020 2.51021 2.71114 2.79637 2.82741 2.99582 3.02842 3.20102 3.52447 3.75512 3.85087 4.41971 4.68550 4.73156 4.89311 4.92419 5.11565 5.28988 5.32242 5.49089 5.54505 5.59027 5.65341 5.72519 5.85218 5.91284 5.98073 6.00823 6.03330 6.24604 6.25629 6.54034 6.55741 6.63091 6.64765 6.76749 6.80717 6.95218 7.10552 7.24796 7.37414 7.47081 7.65927 7.78747 7.95116 8.22682 8.42711 8.69645 8.74973 8.94679 9.67090 10.10973 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.016262 B = 0.003504 C = 0.003131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.435189 B = 7989.903648 C = 8939.962695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.063 4.063 3 H 0.073 0.927 4 C -0.128 4.128 5 C -0.039 4.039 6 C 0.096 3.904 7 N -0.294 5.294 8 N -0.484 5.484 9 H 0.439 0.561 10 C 0.072 3.928 11 C -0.227 4.227 12 C -0.024 4.024 13 H 0.091 0.909 14 C 0.512 3.488 15 O -0.471 6.471 16 N -0.659 5.659 17 C 0.337 3.663 18 C -0.236 4.236 19 C 0.145 3.855 20 C -0.460 4.460 21 H 0.080 0.920 22 C 0.077 3.923 23 N -0.801 5.801 24 Si 0.914 3.086 25 H -0.263 1.263 26 H -0.278 1.278 27 H -0.265 1.265 28 C -0.280 4.280 29 C 0.116 3.884 30 N -0.547 5.547 31 H 0.077 0.923 32 H 0.053 0.947 33 H 0.049 0.951 34 H 0.104 0.896 35 H 0.068 0.932 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.177 0.823 39 H 0.404 0.596 40 H 0.128 0.872 41 H 0.280 0.720 42 H 0.102 0.898 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.157 11.685 4.652 13.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.082 4.082 3 H 0.091 0.909 4 C -0.165 4.165 5 C -0.078 4.078 6 C -0.073 4.073 7 N -0.116 5.116 8 N -0.192 5.192 9 H 0.283 0.717 10 C -0.075 4.075 11 C -0.239 4.239 12 C -0.047 4.047 13 H 0.109 0.891 14 C 0.296 3.704 15 O -0.341 6.341 16 N -0.304 5.304 17 C 0.112 3.888 18 C -0.261 4.261 19 C 0.137 3.863 20 C -0.492 4.492 21 H 0.098 0.902 22 C -0.141 4.141 23 N -0.427 5.427 24 Si 0.738 3.262 25 H -0.188 1.188 26 H -0.203 1.203 27 H -0.190 1.190 28 C -0.304 4.304 29 C -0.038 4.038 30 N -0.266 5.266 31 H 0.096 0.904 32 H 0.072 0.928 33 H 0.069 0.931 34 H 0.122 0.878 35 H 0.086 0.914 36 H 0.099 0.901 37 H 0.098 0.902 38 H 0.194 0.806 39 H 0.239 0.761 40 H 0.145 0.855 41 H 0.091 0.909 42 H 0.120 0.880 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 6.451 11.694 6.630 14.911 hybrid contribution -0.271 -0.595 -3.060 3.129 sum 6.180 11.100 3.570 13.196 Atomic orbital electron populations 1.21998 0.94563 1.03838 1.01091 1.20917 0.95940 0.98210 0.93125 0.90904 1.21965 0.92695 1.04884 0.96993 1.20184 0.95047 1.01639 0.90913 1.22374 0.90368 0.97839 0.96672 1.76990 1.18420 1.23500 0.92721 1.46269 1.08527 1.58022 1.06335 0.71729 1.22111 0.85543 1.00285 0.99519 1.19591 0.95072 1.16208 0.92987 1.19775 0.89909 0.94516 1.00521 0.89051 1.20490 0.79583 0.86772 0.83528 1.90655 1.46132 1.61972 1.35330 1.43529 1.54512 1.22772 1.09581 1.18233 0.93590 0.86430 0.90591 1.21597 1.10848 0.99206 0.94473 1.17571 0.87380 0.88875 0.92516 1.19520 1.07933 1.28504 0.93215 0.90167 1.25898 0.93905 0.93135 1.01115 1.69729 1.06872 1.32655 1.33482 0.86275 0.79192 0.80131 0.80573 1.18803 1.20324 1.18956 1.21970 1.12267 1.02587 0.93575 1.21781 0.94769 0.91171 0.96129 1.67231 1.18449 1.10927 1.30010 0.90400 0.92792 0.93148 0.87795 0.91373 0.90135 0.90246 0.80568 0.76114 0.85454 0.90893 0.88002 0.85908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.00 8.58 37.16 0.32 -1.68 16 2 C -0.06 -0.77 2.40 -90.36 -0.22 -0.99 16 3 H 0.07 0.77 8.10 -51.93 -0.42 0.35 16 4 C -0.13 -1.63 5.03 -26.47 -0.13 -1.76 16 5 C -0.04 -0.46 6.31 -27.56 -0.17 -0.64 16 6 C 0.10 1.36 7.10 -82.35 -0.58 0.78 16 7 N -0.29 -4.25 12.68 33.75 0.43 -3.82 16 8 N -0.48 -5.69 7.37 30.35 0.22 -5.47 16 9 H 0.44 3.67 8.96 -182.43 -1.64 2.03 16 10 C 0.07 0.85 11.95 -17.37 -0.21 0.65 16 11 C -0.23 -3.08 5.14 -104.98 -0.54 -3.62 16 12 C -0.02 -0.32 2.67 -92.63 -0.25 -0.57 16 13 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 14 C 0.51 9.11 6.06 -10.98 -0.07 9.04 16 15 O -0.47 -9.96 10.47 5.56 0.06 -9.91 16 16 N -0.66 -12.32 5.39 -11.49 -0.06 -12.38 16 17 C 0.34 7.90 7.42 -154.70 -1.15 6.75 16 18 C -0.24 -5.83 8.58 -38.48 -0.33 -6.16 16 19 C 0.14 3.75 5.56 -106.55 -0.59 3.16 16 20 C -0.46 -11.70 9.12 -37.65 -0.34 -12.04 16 21 H 0.08 1.95 7.86 -52.49 -0.41 1.54 16 22 C 0.08 1.83 5.32 -17.34 -0.09 1.74 16 23 N -0.80 -19.43 10.86 55.55 0.60 -18.83 16 24 Si 0.91 17.80 29.57 -169.99 -5.03 12.78 16 25 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 26 H -0.28 -5.27 7.11 56.52 0.40 -4.87 16 27 H -0.26 -5.16 7.11 56.52 0.40 -4.75 16 28 C -0.28 -6.80 9.90 -38.70 -0.38 -7.18 16 29 C 0.12 2.74 11.15 -17.68 -0.20 2.54 16 30 N -0.55 -13.56 7.85 -12.52 -0.10 -13.66 16 31 H 0.08 1.25 6.16 -51.93 -0.32 0.93 16 32 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.05 0.60 8.13 -51.93 -0.42 0.18 16 34 H 0.10 1.71 5.43 -51.93 -0.28 1.42 16 35 H 0.07 0.75 8.09 -51.93 -0.42 0.32 16 36 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 38 H 0.18 1.57 8.06 -52.49 -0.42 1.15 16 39 H 0.40 6.20 8.70 -40.82 -0.35 5.85 16 40 H 0.13 3.12 6.34 -52.49 -0.33 2.79 16 41 H 0.28 6.18 8.29 -40.82 -0.34 5.85 16 42 H 0.10 2.28 8.06 -52.49 -0.42 1.85 16 43 H 0.12 2.54 8.06 -52.49 -0.42 2.12 16 LS Contribution 350.61 15.07 5.28 5.28 Total: -1.00 -32.08 350.61 -10.22 -42.30 By element: Atomic # 1 Polarization: 20.38 SS G_CDS: -6.69 Total: 13.69 kcal Atomic # 6 Polarization: -5.05 SS G_CDS: -4.94 Total: -9.99 kcal Atomic # 7 Polarization: -55.25 SS G_CDS: 1.09 Total: -54.15 kcal Atomic # 8 Polarization: -9.96 SS G_CDS: 0.06 Total: -9.91 kcal Atomic # 14 Polarization: 17.80 SS G_CDS: -5.03 Total: 12.78 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -32.08 -10.22 -42.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879181172.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.357 kcal (2) G-P(sol) polarization free energy of solvation -32.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.299 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds