Wall clock time and date at job start Tue Mar 31 2020 14:57:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.46934 * 2 1 4 4 C 1.50699 * 109.47174 * 239.99896 * 2 1 3 5 5 C 1.38671 * 120.42036 * 24.13881 * 4 2 1 6 6 C 1.38626 * 118.41991 * 179.78727 * 5 4 2 7 7 C 1.38227 * 119.16331 * 0.50815 * 6 5 4 8 8 N 1.31858 * 120.75914 * 359.72961 * 7 6 5 9 9 C 1.31886 * 121.72793 * 0.02562 * 8 7 6 10 10 N 1.46495 * 109.47196 * 119.99497 * 2 1 3 11 11 C 1.46502 * 119.99771 * 56.98459 * 10 2 1 12 12 C 1.34778 * 120.00298 * 236.99239 * 10 2 1 13 13 O 1.21575 * 119.99833 * 359.97438 * 12 10 2 14 14 N 1.34776 * 119.99699 * 179.97438 * 12 10 2 15 15 C 1.39254 * 119.99821 * 185.77992 * 14 12 10 16 16 C 1.39683 * 119.56928 * 18.79543 * 15 14 12 17 17 C 1.38647 * 119.49283 * 180.02562 * 16 15 14 18 18 C 1.38360 * 118.67214 * 0.02562 * 17 16 15 19 19 C 1.40576 * 119.12541 * 0.02562 * 18 17 16 20 20 C 1.41341 * 119.78129 * 179.97438 * 19 18 17 21 21 H 1.08002 * 120.00047 * 9.65564 * 20 19 18 22 22 C 1.40027 * 119.99439 * 189.65023 * 20 19 18 23 23 N 1.30744 * 119.99620 * 195.36174 * 22 20 19 24 24 Si 1.86800 * 120.00324 * 15.36855 * 22 20 19 25 25 H 1.48501 * 109.46832 * 269.99718 * 24 22 20 26 26 H 1.48504 * 109.46997 * 29.99328 * 24 22 20 27 27 H 1.48499 * 109.47309 * 149.99602 * 24 22 20 28 28 N 1.31906 * 119.57593 * 199.07108 * 15 14 12 29 29 H 1.09003 * 109.47381 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47567 * 300.00704 * 1 2 3 31 31 H 1.09006 * 109.47081 * 59.99829 * 1 2 3 32 32 H 1.08000 * 120.78740 * 0.02562 * 5 4 2 33 33 H 1.08007 * 120.41854 * 180.22269 * 6 5 4 34 34 H 1.07993 * 119.62030 * 179.74496 * 7 6 5 35 35 H 1.07998 * 119.61339 * 179.97438 * 9 8 7 36 36 H 1.08991 * 109.47696 * 264.75339 * 11 10 2 37 37 H 1.09003 * 109.46810 * 24.75493 * 11 10 2 38 38 H 1.09010 * 109.47019 * 144.74757 * 11 10 2 39 39 H 0.96998 * 120.00304 * 5.78341 * 14 12 10 40 40 H 1.08002 * 120.25720 * 0.04540 * 16 15 14 41 41 H 1.07998 * 120.66450 * 179.97438 * 17 16 15 42 42 H 1.07998 * 120.43546 * 180.02562 * 18 17 16 43 43 H 0.97003 * 120.00234 * 354.92268 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 6 1.2376 -0.7998 -2.3633 6 6 1.7428 -1.4588 -3.4733 7 6 3.0087 -2.0103 -3.4110 8 7 3.7347 -1.9101 -2.3148 9 6 3.2883 -1.2864 -1.2419 10 7 2.0183 -0.6905 1.1962 11 6 1.6107 -2.0723 1.4620 12 6 2.8424 -0.0545 2.0522 13 8 3.1809 1.0921 1.8315 14 7 3.2912 -0.6897 3.1530 15 6 4.0435 0.0028 4.0983 16 6 4.0043 1.3989 4.1223 17 6 4.7543 2.0868 5.0639 18 6 5.5246 1.3629 5.9567 19 6 5.5225 -0.0408 5.8807 20 6 6.3047 -0.7940 6.7855 21 1 6.7763 -0.3074 7.6264 22 6 6.4679 -2.1712 6.5915 23 7 6.9246 -2.9184 7.5623 24 14 6.0333 -2.9407 4.9457 25 1 4.6096 -3.3627 4.9573 26 1 6.2461 -1.9468 3.8630 27 1 6.8985 -4.1240 4.7086 28 7 4.7882 -0.6678 4.9560 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 0.2500 -0.3630 -2.3816 33 1 1.1528 -1.5443 -4.3740 34 1 3.4079 -2.5288 -4.2700 35 1 3.9118 -1.2251 -0.3622 36 1 0.7519 -2.0752 2.1331 37 1 1.3407 -2.5582 0.5243 38 1 2.4365 -2.6118 1.9261 39 1 3.0903 -1.6291 3.2867 40 1 3.3940 1.9384 3.4131 41 1 4.7384 3.1660 5.0992 42 1 6.1195 1.8696 6.7021 43 1 7.2197 -2.5099 8.3911 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881154217.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:18 Heat of formation + Delta-G solvation = 51.722695 kcal Electronic energy + Delta-G solvation = -27332.899980 eV Core-core repulsion = 23571.486781 eV Total energy + Delta-G solvation = -3761.413199 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.01939 -40.10165 -38.44324 -36.52368 -34.69148 -33.71810 -33.08405 -31.81053 -31.03962 -29.93473 -29.13215 -27.16862 -25.36893 -24.79424 -23.51858 -22.68882 -21.73235 -20.82592 -19.49769 -18.64387 -18.05210 -17.60114 -16.87559 -16.47929 -15.80023 -15.74169 -15.23056 -14.97901 -14.54659 -14.17673 -13.98250 -13.93432 -13.65992 -13.59377 -13.31766 -13.02790 -12.72481 -12.58848 -12.45851 -12.32917 -12.22208 -12.05609 -11.83542 -11.45563 -11.15780 -10.86959 -10.31732 -10.07621 -9.97925 -9.75748 -9.69283 -9.44332 -9.16220 -9.07650 -8.82121 -8.48272 -7.88196 -7.36813 -7.24109 -4.72897 0.83300 1.02104 2.37246 2.55327 2.70917 3.33648 3.47471 3.59046 3.63891 3.86813 3.95546 4.16391 4.34435 4.47415 4.52202 4.62805 4.69677 4.71398 4.87971 4.94741 5.02433 5.17524 5.25534 5.42624 5.50417 5.50956 5.56528 5.60443 5.76620 5.85914 5.88761 5.91844 6.11012 6.26254 6.45364 6.48370 6.57812 6.68733 6.81344 7.19228 7.32499 7.46867 7.64819 7.77272 7.77561 7.86705 8.18691 8.35617 8.63404 8.72175 9.46888 10.00190 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.016754 B = 0.003520 C = 0.003163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.850667 B = 7952.788921 C = 8851.428355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.199 3.801 3 H 0.120 0.880 4 C -0.148 4.148 5 C -0.070 4.070 6 C -0.175 4.175 7 C 0.094 3.906 8 N -0.482 5.482 9 C 0.119 3.881 10 N -0.627 5.627 11 C 0.074 3.926 12 C 0.712 3.288 13 O -0.560 6.560 14 N -0.664 5.664 15 C 0.399 3.601 16 C -0.309 4.309 17 C -0.036 4.036 18 C -0.279 4.279 19 C 0.276 3.724 20 C -0.482 4.482 21 H 0.084 0.916 22 C 0.049 3.951 23 N -0.806 5.806 24 Si 1.142 2.858 25 H -0.289 1.289 26 H -0.279 1.279 27 H -0.326 1.326 28 N -0.596 5.596 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.138 0.862 33 H 0.134 0.866 34 H 0.154 0.846 35 H 0.152 0.848 36 H 0.061 0.939 37 H 0.075 0.925 38 H 0.069 0.931 39 H 0.403 0.597 40 H 0.140 0.860 41 H 0.105 0.895 42 H 0.104 0.896 43 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.486 0.584 -18.475 23.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.094 3.906 3 H 0.138 0.862 4 C -0.151 4.151 5 C -0.097 4.097 6 C -0.195 4.195 7 C -0.063 4.063 8 N -0.190 5.190 9 C -0.038 4.038 10 N -0.365 5.365 11 C -0.069 4.069 12 C 0.413 3.587 13 O -0.436 6.436 14 N -0.312 5.312 15 C 0.167 3.833 16 C -0.334 4.334 17 C -0.060 4.060 18 C -0.302 4.302 19 C 0.152 3.848 20 C -0.514 4.514 21 H 0.102 0.898 22 C -0.172 4.172 23 N -0.428 5.428 24 Si 0.975 3.025 25 H -0.217 1.217 26 H -0.206 1.206 27 H -0.259 1.259 28 N -0.321 5.321 29 H 0.081 0.919 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.156 0.844 33 H 0.152 0.848 34 H 0.171 0.829 35 H 0.169 0.831 36 H 0.080 0.920 37 H 0.094 0.906 38 H 0.088 0.912 39 H 0.240 0.760 40 H 0.158 0.842 41 H 0.123 0.877 42 H 0.122 0.878 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -13.455 -1.266 -19.286 23.550 hybrid contribution -0.781 2.149 1.147 2.558 sum -14.236 0.883 -18.139 23.076 Atomic orbital electron populations 1.22203 0.93886 1.02730 1.02985 1.19659 0.93912 0.97208 0.79794 0.86237 1.21268 0.96225 1.00824 0.96772 1.21538 0.99615 0.96415 0.92098 1.22135 0.97686 1.00151 0.99499 1.22835 0.91200 0.96307 0.95986 1.67776 1.35955 1.15359 0.99919 1.22666 0.92996 0.91990 0.96117 1.47081 1.50622 1.14518 1.24237 1.21760 1.00775 0.82093 1.02257 1.15645 0.78985 0.84530 0.79533 1.90850 1.61412 1.16235 1.75086 1.42460 1.53953 1.14214 1.20600 1.17793 0.89515 0.88317 0.87707 1.21525 1.12155 0.92443 1.07228 1.20915 0.93871 0.98049 0.93211 1.21604 1.08633 0.94718 1.05243 1.18164 0.88934 0.89844 0.87854 1.20648 1.26425 0.95155 1.09215 0.89833 1.27628 0.90599 0.94348 1.04650 1.70613 1.27795 1.39690 1.04671 0.82152 0.75263 0.72265 0.72782 1.21655 1.20632 1.25893 1.66142 1.15238 1.39041 1.11714 0.91926 0.91286 0.91011 0.84396 0.84775 0.82875 0.83062 0.92037 0.90641 0.91248 0.76000 0.84239 0.87715 0.87753 0.90474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.16 8.29 37.16 0.31 -0.85 16 2 C 0.20 2.05 3.05 -69.09 -0.21 1.84 16 3 H 0.12 1.46 6.90 -51.93 -0.36 1.11 16 4 C -0.15 -1.49 4.74 -104.48 -0.50 -1.99 16 5 C -0.07 -0.55 9.24 -39.28 -0.36 -0.91 16 6 C -0.17 -1.30 10.11 -39.44 -0.40 -1.70 16 7 C 0.09 0.88 11.18 -17.54 -0.20 0.68 16 8 N -0.48 -6.11 10.36 -13.25 -0.14 -6.24 16 9 C 0.12 1.50 10.26 -17.55 -0.18 1.32 16 10 N -0.63 -7.66 1.92 -181.01 -0.35 -8.01 16 11 C 0.07 0.71 8.83 59.85 0.53 1.24 16 12 C 0.71 12.07 8.09 -86.92 -0.70 11.36 16 13 O -0.56 -11.13 12.47 5.30 0.07 -11.06 16 14 N -0.66 -12.49 5.29 -15.78 -0.08 -12.58 16 15 C 0.40 9.24 7.51 -154.99 -1.16 8.08 16 16 C -0.31 -7.05 8.83 -38.89 -0.34 -7.39 16 17 C -0.04 -0.81 10.15 -39.39 -0.40 -1.20 16 18 C -0.28 -6.77 9.83 -38.66 -0.38 -7.15 16 19 C 0.28 7.33 6.26 -85.00 -0.53 6.80 16 20 C -0.48 -13.23 9.51 -37.73 -0.36 -13.59 16 21 H 0.08 2.28 8.06 -52.49 -0.42 1.86 16 22 C 0.05 1.35 5.51 -17.34 -0.10 1.25 16 23 N -0.81 -21.97 13.65 55.55 0.76 -21.21 16 24 Si 1.14 27.86 25.94 -169.99 -4.41 23.45 16 25 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 26 H -0.28 -7.02 6.53 56.52 0.37 -6.65 16 27 H -0.33 -7.84 7.11 56.52 0.40 -7.44 16 28 N -0.60 -15.24 5.06 -10.25 -0.05 -15.29 16 29 H 0.06 0.40 7.53 -51.93 -0.39 0.01 16 30 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.07 0.38 6.64 -51.93 -0.34 0.04 16 32 H 0.14 0.71 6.17 -52.49 -0.32 0.39 16 33 H 0.13 0.61 8.06 -52.48 -0.42 0.19 16 34 H 0.15 1.03 8.06 -52.49 -0.42 0.61 16 35 H 0.15 2.14 7.56 -52.49 -0.40 1.74 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.07 0.61 7.33 -51.93 -0.38 0.23 16 38 H 0.07 0.69 6.57 -51.92 -0.34 0.35 16 39 H 0.40 6.73 6.63 -40.82 -0.27 6.46 16 40 H 0.14 3.12 5.33 -52.50 -0.28 2.84 16 41 H 0.10 1.99 8.06 -52.49 -0.42 1.57 16 42 H 0.10 2.36 8.06 -52.49 -0.42 1.93 16 43 H 0.28 7.41 8.73 -40.82 -0.36 7.06 16 LS Contribution 352.79 15.07 5.32 5.32 Total: -1.00 -32.52 352.79 -9.10 -41.62 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: -5.23 Total: 6.21 kcal Atomic # 6 Polarization: 2.77 SS G_CDS: -4.98 Total: -2.21 kcal Atomic # 7 Polarization: -63.47 SS G_CDS: 0.14 Total: -63.33 kcal Atomic # 8 Polarization: -11.13 SS G_CDS: 0.07 Total: -11.06 kcal Atomic # 14 Polarization: 27.86 SS G_CDS: -4.41 Total: 23.45 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.52 -9.10 -41.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881154217.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.348 kcal (2) G-P(sol) polarization free energy of solvation -32.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.625 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds