Wall clock time and date at job start Tue Mar 31 2020 14:57:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.46506 * 2 1 4 4 C 1.50691 * 109.47393 * 119.99864 * 2 1 3 5 5 C 1.38232 * 119.62301 * 275.00182 * 4 2 1 6 6 C 1.38616 * 119.16125 * 179.97438 * 5 4 2 7 7 C 1.38672 * 118.42531 * 0.02562 * 6 5 4 8 8 C 1.38179 * 119.16247 * 359.97438 * 7 6 5 9 9 N 1.31859 * 119.61335 * 94.73424 * 4 2 1 10 10 N 1.46500 * 109.47259 * 240.00598 * 2 1 3 11 11 C 1.46501 * 119.99724 * 299.99518 * 10 2 1 12 12 C 1.34780 * 120.00133 * 119.99400 * 10 2 1 13 13 O 1.21575 * 120.00163 * 359.97438 * 12 10 2 14 14 N 1.34782 * 119.99685 * 180.02562 * 12 10 2 15 15 C 1.39244 * 119.99734 * 183.66188 * 14 12 10 16 16 C 1.39689 * 119.57250 * 339.04740 * 15 14 12 17 17 C 1.38647 * 119.48874 * 179.97438 * 16 15 14 18 18 C 1.38350 * 118.67675 * 0.02562 * 17 16 15 19 19 C 1.40577 * 119.12972 * 359.97438 * 18 17 16 20 20 C 1.41335 * 119.78542 * 180.02562 * 19 18 17 21 21 H 1.08000 * 120.00165 * 5.16419 * 20 19 18 22 22 C 1.40030 * 119.99495 * 185.17022 * 20 19 18 23 23 N 1.30745 * 119.99927 * 354.85343 * 22 20 19 24 24 Si 1.86801 * 119.99525 * 174.85168 * 22 20 19 25 25 H 1.48509 * 109.46763 * 95.00186 * 24 22 20 26 26 H 1.48497 * 109.47117 * 214.99416 * 24 22 20 27 27 H 1.48497 * 109.47297 * 334.99927 * 24 22 20 28 28 N 1.31894 * 119.57531 * 158.77514 * 15 14 12 29 29 H 1.08997 * 109.47002 * 299.99340 * 1 2 3 30 30 H 1.08996 * 109.47355 * 59.99991 * 1 2 3 31 31 H 1.09001 * 109.46506 * 180.02562 * 1 2 3 32 32 H 1.08002 * 120.41567 * 359.97438 * 5 4 2 33 33 H 1.08004 * 120.78658 * 180.02562 * 6 5 4 34 34 H 1.07998 * 120.42059 * 180.02562 * 7 6 5 35 35 H 1.07997 * 119.62197 * 180.02562 * 8 7 6 36 36 H 1.08996 * 109.46712 * 269.99780 * 11 10 2 37 37 H 1.08997 * 109.47027 * 29.99847 * 11 10 2 38 38 H 1.08999 * 109.46869 * 149.99996 * 11 10 2 39 39 H 0.96993 * 119.99793 * 3.65984 * 14 12 10 40 40 H 1.07991 * 120.25566 * 359.97438 * 16 15 14 41 41 H 1.08005 * 120.66182 * 180.02562 * 17 16 15 42 42 H 1.07995 * 120.43359 * 179.97438 * 18 17 16 43 43 H 0.97000 * 119.99278 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2304 5 6 2.1614 -0.0132 2.4170 6 6 2.6239 -0.6761 3.5431 7 6 2.9414 -2.0216 3.4331 8 6 2.7868 -2.6524 2.2135 9 7 2.3388 -1.9911 1.1639 10 7 2.0184 -0.6905 -1.1962 11 6 1.6645 -2.0931 -1.4281 12 6 2.7932 -0.0354 -2.0834 13 8 3.0864 1.1287 -1.8912 14 7 3.2420 -0.6705 -3.1842 15 6 4.1042 -0.0180 -4.0616 16 6 4.1594 1.3778 -4.0634 17 6 5.0189 2.0257 -4.9373 18 6 5.8004 1.2633 -5.7871 19 6 5.6992 -0.1379 -5.7373 20 6 6.4915 -0.9302 -6.5987 21 1 7.2313 -0.4642 -7.2327 22 6 6.3172 -2.3192 -6.6302 23 7 5.4942 -2.8939 -5.7924 24 14 7.2605 -3.3510 -7.8691 25 1 8.4969 -3.8765 -7.2363 26 1 6.4128 -4.4853 -8.3162 27 1 7.6217 -2.5115 -9.0396 28 7 4.8621 -0.7260 -4.8764 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3632 -1.0277 0.0005 32 1 1.9051 1.0349 2.4661 33 1 2.7344 -0.1572 4.4838 34 1 3.3041 -2.5696 4.2901 35 1 3.0314 -3.7001 2.1196 36 1 2.4159 -2.7375 -0.9718 37 1 0.6906 -2.3001 -0.9847 38 1 1.6239 -2.2850 -2.5003 39 1 2.9644 -1.5821 -3.3651 40 1 3.5374 1.9478 -3.3892 41 1 5.0771 3.1040 -4.9544 42 1 6.4794 1.7385 -6.4795 43 1 5.3732 -3.8560 -5.8145 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881154427.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:02 Heat of formation + Delta-G solvation = 74.233626 kcal Electronic energy + Delta-G solvation = -27096.832417 eV Core-core repulsion = 23336.395365 eV Total energy + Delta-G solvation = -3760.437052 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.74160 -39.82377 -37.92881 -36.02828 -34.29320 -33.34200 -32.57021 -32.22248 -30.31983 -29.82821 -28.78659 -26.74860 -25.41279 -24.41151 -23.68165 -22.44827 -21.50047 -20.78494 -19.31665 -18.06407 -17.37897 -17.12231 -16.43181 -16.14134 -15.72433 -15.25604 -15.10995 -14.64617 -14.46940 -14.30730 -13.86488 -13.81164 -13.46589 -13.28310 -12.99060 -12.79273 -12.37849 -12.35722 -12.14621 -12.09779 -11.88391 -11.83245 -11.22082 -11.21572 -11.01681 -10.83831 -10.60996 -10.06350 -10.04427 -9.74445 -9.64645 -9.15432 -9.14652 -8.92216 -8.39037 -7.95085 -7.59710 -6.99278 -6.35210 -4.43566 0.92234 1.11673 2.74352 2.89589 3.00939 3.12059 3.15763 3.30980 3.62912 3.73494 3.99548 4.10059 4.37850 4.53407 4.66591 4.85006 4.89135 4.95566 5.09941 5.11571 5.26549 5.40096 5.48534 5.57905 5.72639 5.74120 5.90684 5.96403 5.98513 6.04370 6.16128 6.23427 6.52222 6.52826 6.59122 6.84736 6.88251 7.06375 7.15201 7.28722 7.59391 7.68345 7.86174 7.98721 8.12672 8.24807 8.49325 8.77209 8.96755 9.12765 10.13043 10.37699 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.015952 B = 0.003113 C = 0.002831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1754.797841 B = 8992.568240 C = 9886.533272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.205 3.795 3 H 0.119 0.881 4 C 0.124 3.876 5 C -0.165 4.165 6 C -0.074 4.074 7 C -0.180 4.180 8 C 0.100 3.900 9 N -0.468 5.468 10 N -0.618 5.618 11 C 0.093 3.907 12 C 0.711 3.289 13 O -0.574 6.574 14 N -0.656 5.656 15 C 0.372 3.628 16 C -0.314 4.314 17 C -0.051 4.051 18 C -0.292 4.292 19 C 0.280 3.720 20 C -0.437 4.437 21 H 0.084 0.916 22 C 0.072 3.928 23 N -0.723 5.723 24 Si 0.906 3.094 25 H -0.271 1.271 26 H -0.277 1.277 27 H -0.262 1.262 28 N -0.509 5.509 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.062 0.938 32 H 0.136 0.864 33 H 0.133 0.867 34 H 0.132 0.868 35 H 0.155 0.845 36 H 0.071 0.929 37 H 0.067 0.933 38 H 0.057 0.943 39 H 0.404 0.596 40 H 0.140 0.860 41 H 0.097 0.903 42 H 0.098 0.902 43 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.062 -1.475 16.286 19.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.100 3.900 3 H 0.137 0.863 4 C -0.015 4.015 5 C -0.185 4.185 6 C -0.100 4.100 7 C -0.200 4.200 8 C -0.057 4.057 9 N -0.177 5.177 10 N -0.355 5.355 11 C -0.051 4.051 12 C 0.412 3.588 13 O -0.452 6.452 14 N -0.304 5.304 15 C 0.137 3.863 16 C -0.338 4.338 17 C -0.076 4.076 18 C -0.315 4.315 19 C 0.153 3.847 20 C -0.470 4.470 21 H 0.102 0.898 22 C -0.153 4.153 23 N -0.345 5.345 24 Si 0.730 3.270 25 H -0.196 1.196 26 H -0.202 1.202 27 H -0.185 1.185 28 N -0.227 5.227 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.081 0.919 32 H 0.154 0.846 33 H 0.151 0.849 34 H 0.150 0.850 35 H 0.172 0.828 36 H 0.089 0.911 37 H 0.086 0.914 38 H 0.075 0.925 39 H 0.241 0.759 40 H 0.157 0.843 41 H 0.116 0.884 42 H 0.116 0.884 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -10.082 -2.224 15.713 18.802 hybrid contribution 0.568 0.146 0.331 0.673 sum -9.515 -2.077 16.044 18.769 Atomic orbital electron populations 1.22130 0.93596 1.02804 1.02892 1.19738 0.93939 0.96609 0.79761 0.86306 1.21714 0.94576 0.90458 0.94733 1.21884 1.01738 1.01523 0.93373 1.21543 0.95320 0.94484 0.98632 1.22128 1.02511 0.95805 0.99585 1.22824 0.94435 1.00169 0.88235 1.67635 1.10577 1.08511 1.30963 1.46790 1.53738 1.12694 1.22238 1.21700 1.01664 0.81642 1.00054 1.15699 0.78764 0.84637 0.79681 1.90760 1.62422 1.15161 1.76876 1.42370 1.47630 1.17964 1.22399 1.18265 0.89853 0.88022 0.90198 1.21852 1.10013 0.93602 1.08369 1.20830 0.94882 0.97593 0.94281 1.21704 1.07878 0.95303 1.06566 1.18166 0.88887 0.88701 0.88897 1.19537 1.17188 0.91223 1.19008 0.89765 1.26028 0.94815 0.98696 0.95719 1.70134 1.25644 1.10517 1.28232 0.86346 0.79874 0.79528 0.81219 1.19635 1.20199 1.18550 1.68015 1.09105 1.36910 1.08703 0.91333 0.91086 0.91912 0.84636 0.84888 0.85003 0.82779 0.91087 0.91408 0.92463 0.75886 0.84314 0.88446 0.88352 0.91950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.53 9.15 37.16 0.34 -1.19 16 2 C 0.21 2.65 2.91 -69.09 -0.20 2.45 16 3 H 0.12 1.68 6.87 -51.93 -0.36 1.32 16 4 C 0.12 1.52 5.88 -82.59 -0.49 1.04 16 5 C -0.16 -1.66 9.77 -39.44 -0.39 -2.04 16 6 C -0.07 -0.63 10.17 -39.28 -0.40 -1.03 16 7 C -0.18 -1.55 10.11 -39.44 -0.40 -1.95 16 8 C 0.10 1.03 11.18 -17.55 -0.20 0.83 16 9 N -0.47 -5.89 7.24 -9.47 -0.07 -5.96 16 10 N -0.62 -9.55 2.70 -181.01 -0.49 -10.04 16 11 C 0.09 1.21 8.60 59.85 0.51 1.72 16 12 C 0.71 14.28 8.18 -86.91 -0.71 13.57 16 13 O -0.57 -13.02 12.33 5.30 0.07 -12.96 16 14 N -0.66 -14.30 5.29 -15.79 -0.08 -14.39 16 15 C 0.37 9.67 7.51 -155.00 -1.16 8.51 16 16 C -0.31 -8.01 8.89 -38.89 -0.35 -8.35 16 17 C -0.05 -1.26 10.15 -39.39 -0.40 -1.66 16 18 C -0.29 -7.57 9.83 -38.66 -0.38 -7.95 16 19 C 0.28 7.95 6.55 -84.99 -0.56 7.39 16 20 C -0.44 -11.96 9.13 -37.73 -0.34 -12.30 16 21 H 0.08 2.16 7.85 -52.49 -0.41 1.75 16 22 C 0.07 1.85 5.49 -17.34 -0.10 1.75 16 23 N -0.72 -19.21 11.48 55.55 0.64 -18.57 16 24 Si 0.91 18.82 29.56 -169.99 -5.03 13.80 16 25 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 26 H -0.28 -5.62 7.11 56.52 0.40 -5.21 16 27 H -0.26 -5.36 7.11 56.52 0.40 -4.95 16 28 N -0.51 -14.38 7.91 -10.26 -0.08 -14.46 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.06 0.60 6.66 -51.93 -0.35 0.25 16 32 H 0.14 1.08 8.06 -52.49 -0.42 0.66 16 33 H 0.13 0.78 8.06 -52.48 -0.42 0.36 16 34 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 35 H 0.15 1.22 8.06 -52.49 -0.42 0.80 16 36 H 0.07 0.98 6.96 -51.93 -0.36 0.62 16 37 H 0.07 0.74 6.43 -51.93 -0.33 0.41 16 38 H 0.06 0.74 6.31 -51.93 -0.33 0.41 16 39 H 0.40 8.09 6.52 -40.82 -0.27 7.82 16 40 H 0.14 3.51 5.16 -52.93 -0.27 3.24 16 41 H 0.10 2.07 8.06 -52.48 -0.42 1.65 16 42 H 0.10 2.34 8.06 -52.49 -0.42 1.92 16 43 H 0.27 6.47 8.29 -40.82 -0.34 6.13 16 LS Contribution 357.01 15.07 5.38 5.38 Total: -1.00 -33.57 357.01 -10.07 -43.64 By element: Atomic # 1 Polarization: 17.96 SS G_CDS: -5.19 Total: 12.77 kcal Atomic # 6 Polarization: 6.00 SS G_CDS: -5.21 Total: 0.79 kcal Atomic # 7 Polarization: -63.33 SS G_CDS: -0.08 Total: -63.41 kcal Atomic # 8 Polarization: -13.02 SS G_CDS: 0.07 Total: -12.96 kcal Atomic # 14 Polarization: 18.82 SS G_CDS: -5.03 Total: 13.80 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -33.57 -10.07 -43.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881154427.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.874 kcal (2) G-P(sol) polarization free energy of solvation -33.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.640 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds