Wall clock time and date at job start Tue Mar 31 2020 14:33:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.08994 * 109.39186 * 2 1 4 4 C 1.53047 * 109.47001 * 240.13742 * 2 1 3 5 5 C 1.53374 * 109.79004 * 168.23820 * 4 2 1 6 6 C 1.50947 * 108.20270 * 50.63775 * 5 4 2 7 7 N 1.30131 * 128.28624 * 163.16907 * 6 5 4 8 8 N 1.40314 * 108.12519 * 180.30446 * 7 6 5 9 9 H 0.96998 * 126.00084 * 179.97438 * 8 7 6 10 10 C 1.35196 * 107.99174 * 359.95618 * 8 7 6 11 11 C 1.34569 * 107.61886 * 359.96609 * 10 8 7 12 12 C 1.50886 * 128.32730 * 180.12864 * 11 10 8 13 13 H 1.08994 * 109.72407 * 283.15786 * 12 11 10 14 14 C 1.50702 * 109.71547 * 43.76221 * 12 11 10 15 15 O 1.21281 * 120.00107 * 119.38632 * 14 12 11 16 16 N 1.34777 * 120.00017 * 299.38994 * 14 12 11 17 17 C 1.39271 * 119.99826 * 183.50401 * 16 14 12 18 18 C 1.39677 * 119.57557 * 339.17291 * 17 16 14 19 19 C 1.38657 * 119.49320 * 180.02562 * 18 17 16 20 20 C 1.38341 * 118.66845 * 359.74558 * 19 18 17 21 21 C 1.40585 * 119.13331 * 0.49481 * 20 19 18 22 22 C 1.41336 * 119.78888 * 179.77061 * 21 20 19 23 23 H 1.07996 * 119.99929 * 4.86215 * 22 21 20 24 24 C 1.40024 * 119.99951 * 184.86736 * 22 21 20 25 25 N 1.30738 * 120.00029 * 184.82694 * 24 22 21 26 26 Si 1.86803 * 119.99775 * 4.81963 * 24 22 21 27 27 H 1.48506 * 109.46635 * 180.02562 * 26 24 22 28 28 H 1.48501 * 109.47028 * 60.00796 * 26 24 22 29 29 H 1.48496 * 109.47392 * 299.99950 * 26 24 22 30 30 N 1.31902 * 119.57213 * 159.19091 * 17 16 14 31 31 H 1.09008 * 109.47349 * 300.12633 * 1 2 3 32 32 H 1.08998 * 109.47514 * 60.12495 * 1 2 3 33 33 H 1.08997 * 109.47591 * 180.12715 * 1 2 3 34 34 H 1.09003 * 109.41478 * 48.13920 * 4 2 1 35 35 H 1.08999 * 109.35186 * 288.30576 * 4 2 1 36 36 H 1.09001 * 109.71571 * 290.95996 * 5 4 2 37 37 H 1.08999 * 109.71742 * 170.31428 * 5 4 2 38 38 H 1.07993 * 126.19012 * 179.97438 * 10 8 7 39 39 H 0.96993 * 119.99790 * 3.50664 * 16 14 12 40 40 H 1.07997 * 120.25083 * 359.97438 * 18 17 16 41 41 H 1.08001 * 120.66378 * 180.02562 * 19 18 17 42 42 H 1.08000 * 120.43314 * 180.24959 * 20 19 18 43 43 H 0.97008 * 120.00154 * 354.98339 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8918 1.0281 0.0000 4 6 2.0400 -0.7185 -1.2514 5 6 3.5452 -0.4727 -1.4140 6 6 4.2200 -0.7947 -0.1027 7 7 5.4830 -1.0133 0.1218 8 7 5.6435 -1.2791 1.4901 9 1 6.4807 -1.4775 1.9380 10 6 4.4264 -1.2097 2.0746 11 6 3.5305 -0.9111 1.1158 12 6 2.0402 -0.7206 1.2543 13 1 1.5521 -1.6909 1.3452 14 6 1.7455 0.1129 2.4748 15 8 1.1723 1.1755 2.3595 16 7 2.1189 -0.3225 3.6944 17 6 1.7825 0.4118 4.8290 18 6 1.4636 1.7659 4.7043 19 6 1.1295 2.4954 5.8352 20 6 1.1173 1.8526 7.0601 21 6 1.4528 0.4887 7.1206 22 6 1.4496 -0.1806 8.3655 23 1 1.1147 0.3336 9.2541 24 6 1.8808 -1.5103 8.4465 25 7 1.7895 -2.1593 9.5778 26 14 2.5861 -2.3570 6.9382 27 1 2.9650 -3.7505 7.2847 28 1 3.7871 -1.6184 6.4722 29 1 1.5665 -2.3757 5.8587 30 7 1.7695 -0.1805 6.0075 31 1 -0.3634 0.5158 0.8889 32 1 -0.3634 0.5119 -0.8911 33 1 -0.3634 -1.0276 0.0023 34 1 1.5140 -0.3384 -2.1272 35 1 1.8559 -1.7884 -1.1539 36 1 3.7215 0.5717 -1.6716 37 1 3.9404 -1.1174 -2.1990 38 1 4.2119 -1.3654 3.1215 39 1 2.6219 -1.1472 3.7819 40 1 1.4780 2.2412 3.7347 41 1 0.8793 3.5434 5.7605 42 1 0.8573 2.3924 7.9586 43 1 1.4916 -1.6993 10.3782 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882467721.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:10 Heat of formation + Delta-G solvation = 58.955406 kcal Electronic energy + Delta-G solvation = -27896.797768 eV Core-core repulsion = 24135.698203 eV Total energy + Delta-G solvation = -3761.099565 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.87250 -40.13692 -38.41609 -36.88719 -34.65675 -33.62281 -32.76501 -31.39707 -31.11977 -29.76666 -29.38848 -26.84005 -25.38989 -24.24248 -22.90554 -21.82073 -21.11687 -20.87463 -20.02443 -19.02732 -18.43492 -17.85220 -17.30718 -16.47727 -15.56958 -15.19822 -15.08037 -14.88706 -14.51229 -14.35950 -14.16013 -13.73352 -13.64872 -13.31073 -12.95564 -12.90679 -12.79905 -12.37015 -12.24737 -12.11223 -11.92382 -11.68381 -11.28834 -11.22135 -10.95644 -10.88123 -10.70825 -10.52413 -10.38404 -10.02190 -9.71549 -9.56235 -9.28842 -9.17324 -8.62748 -8.52592 -7.79977 -7.51797 -7.26437 -4.81887 1.70393 2.17028 2.50029 2.60562 2.65434 3.02722 3.30527 3.43762 3.56695 3.89715 4.19328 4.32140 4.50518 4.57592 4.58341 4.68315 4.81670 5.07022 5.13124 5.26418 5.31505 5.38206 5.48133 5.54023 5.60686 5.71968 5.78075 5.83445 5.84120 5.88684 6.02726 6.04253 6.32687 6.34525 6.43015 6.43892 6.49190 6.57049 7.08603 7.10230 7.15879 7.39517 7.48424 7.53032 7.59616 7.73020 8.07553 8.25512 8.42635 8.61190 9.35868 9.95342 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.015255 B = 0.004215 C = 0.003677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1835.032589 B = 6640.639167 C = 7612.562856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.068 4.068 3 H 0.084 0.916 4 C -0.111 4.111 5 C -0.040 4.040 6 C 0.093 3.907 7 N -0.287 5.287 8 N -0.478 5.478 9 H 0.442 0.558 10 C 0.071 3.929 11 C -0.235 4.235 12 C -0.021 4.021 13 H 0.106 0.894 14 C 0.526 3.474 15 O -0.505 6.505 16 N -0.656 5.656 17 C 0.383 3.617 18 C -0.312 4.312 19 C -0.036 4.036 20 C -0.276 4.276 21 C 0.273 3.727 22 C -0.477 4.477 23 H 0.083 0.917 24 C 0.043 3.957 25 N -0.806 5.806 26 Si 1.152 2.848 27 H -0.332 1.332 28 H -0.296 1.296 29 H -0.278 1.278 30 N -0.600 5.600 31 H 0.072 0.928 32 H 0.056 0.944 33 H 0.051 0.949 34 H 0.077 0.923 35 H 0.068 0.932 36 H 0.086 0.914 37 H 0.083 0.917 38 H 0.174 0.826 39 H 0.401 0.599 40 H 0.146 0.854 41 H 0.106 0.894 42 H 0.105 0.895 43 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.317 -0.278 -18.792 19.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.087 4.087 3 H 0.103 0.897 4 C -0.149 4.149 5 C -0.079 4.079 6 C -0.076 4.076 7 N -0.110 5.110 8 N -0.186 5.186 9 H 0.286 0.714 10 C -0.076 4.076 11 C -0.246 4.246 12 C -0.043 4.043 13 H 0.124 0.876 14 C 0.312 3.688 15 O -0.379 6.379 16 N -0.301 5.301 17 C 0.153 3.847 18 C -0.336 4.336 19 C -0.060 4.060 20 C -0.299 4.299 21 C 0.149 3.851 22 C -0.509 4.509 23 H 0.101 0.899 24 C -0.178 4.178 25 N -0.428 5.428 26 Si 0.988 3.012 27 H -0.266 1.266 28 H -0.225 1.225 29 H -0.206 1.206 30 N -0.326 5.326 31 H 0.091 0.909 32 H 0.075 0.925 33 H 0.070 0.930 34 H 0.096 0.904 35 H 0.087 0.913 36 H 0.104 0.896 37 H 0.102 0.898 38 H 0.191 0.809 39 H 0.237 0.763 40 H 0.163 0.837 41 H 0.124 0.876 42 H 0.123 0.877 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 4.775 -1.858 -19.743 20.397 hybrid contribution -0.907 1.898 1.888 2.827 sum 3.868 0.040 -17.855 18.269 Atomic orbital electron populations 1.21914 0.94218 1.01682 1.03082 1.20960 0.96246 1.00032 0.91503 0.89733 1.21669 0.93911 1.01313 0.97965 1.20172 0.94242 1.02502 0.90966 1.22304 0.90410 0.98424 0.96449 1.77003 1.18076 1.23085 0.92801 1.46296 1.08563 1.57504 1.06218 0.71369 1.22192 0.85797 1.00432 0.99203 1.19639 0.95368 1.16418 0.93221 1.19828 0.91481 0.99699 0.93293 0.87582 1.20521 0.77998 0.86626 0.83631 1.90564 1.40214 1.21742 1.85387 1.43482 1.55023 1.26541 1.05102 1.18160 0.93453 0.87992 0.85085 1.21753 1.18131 0.93108 1.00644 1.20966 0.94594 0.97943 0.92501 1.21613 1.14973 0.96206 0.97075 1.18259 0.87496 0.89347 0.89966 1.20727 1.37574 0.98978 0.93644 0.89864 1.27746 0.91445 0.94940 1.03663 1.70639 1.31657 1.39279 1.01223 0.81891 0.76563 0.70811 0.71952 1.26558 1.22487 1.20602 1.65985 1.31037 1.37290 0.98243 0.90882 0.92524 0.93024 0.90420 0.91275 0.89607 0.89817 0.80932 0.76305 0.83672 0.87623 0.87729 0.90529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 8.95 37.15 0.33 -1.25 16 2 C -0.07 -0.73 1.77 -90.40 -0.16 -0.89 16 3 H 0.08 1.03 7.76 -51.93 -0.40 0.62 16 4 C -0.11 -0.88 5.18 -26.51 -0.14 -1.02 16 5 C -0.04 -0.35 6.31 -27.57 -0.17 -0.52 16 6 C 0.09 1.10 7.10 -82.34 -0.58 0.51 16 7 N -0.29 -3.62 12.68 33.75 0.43 -3.20 16 8 N -0.48 -5.23 7.37 30.35 0.22 -5.01 16 9 H 0.44 3.49 8.96 -182.44 -1.64 1.85 16 10 C 0.07 0.83 11.00 -17.37 -0.19 0.64 16 11 C -0.23 -2.86 5.41 -104.98 -0.57 -3.43 16 12 C -0.02 -0.25 2.33 -92.63 -0.22 -0.47 16 13 H 0.11 1.13 8.13 -51.93 -0.42 0.71 16 14 C 0.53 8.49 6.72 -10.98 -0.07 8.41 16 15 O -0.50 -9.34 10.94 5.56 0.06 -9.27 16 16 N -0.66 -11.75 4.92 -11.40 -0.06 -11.81 16 17 C 0.38 8.56 7.51 -154.98 -1.16 7.39 16 18 C -0.31 -6.89 8.90 -38.89 -0.35 -7.24 16 19 C -0.04 -0.78 10.15 -39.39 -0.40 -1.18 16 20 C -0.28 -6.53 9.83 -38.66 -0.38 -6.91 16 21 C 0.27 7.08 6.40 -85.00 -0.54 6.54 16 22 C -0.48 -12.86 9.57 -37.74 -0.36 -13.22 16 23 H 0.08 2.24 8.05 -52.49 -0.42 1.82 16 24 C 0.04 1.15 5.52 -17.35 -0.10 1.06 16 25 N -0.81 -21.68 13.65 55.55 0.76 -20.92 16 26 Si 1.15 26.97 25.62 -169.99 -4.35 22.61 16 27 H -0.33 -7.70 7.11 56.52 0.40 -7.30 16 28 H -0.30 -6.70 7.11 56.52 0.40 -6.30 16 29 H -0.28 -6.39 6.60 56.52 0.37 -6.02 16 30 N -0.60 -14.82 4.54 -10.25 -0.05 -14.86 16 31 H 0.07 0.97 6.38 -51.92 -0.33 0.64 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.08 0.49 8.09 -51.93 -0.42 0.07 16 35 H 0.07 0.53 8.10 -51.93 -0.42 0.11 16 36 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.17 1.90 5.90 -52.49 -0.31 1.59 16 39 H 0.40 6.32 6.35 -40.82 -0.26 6.06 16 40 H 0.15 3.14 5.17 -52.91 -0.27 2.87 16 41 H 0.11 1.96 8.06 -52.49 -0.42 1.53 16 42 H 0.10 2.31 8.06 -52.49 -0.42 1.89 16 43 H 0.28 7.31 8.72 -40.82 -0.36 6.95 16 LS Contribution 343.47 15.07 5.18 5.18 Total: -1.00 -31.67 343.47 -9.49 -41.15 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: -6.61 Total: 7.69 kcal Atomic # 6 Polarization: -6.49 SS G_CDS: -5.06 Total: -11.56 kcal Atomic # 7 Polarization: -57.11 SS G_CDS: 1.31 Total: -55.80 kcal Atomic # 8 Polarization: -9.34 SS G_CDS: 0.06 Total: -9.27 kcal Atomic # 14 Polarization: 26.97 SS G_CDS: -4.35 Total: 22.61 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -31.67 -9.49 -41.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882467721.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.108 kcal (2) G-P(sol) polarization free energy of solvation -31.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.152 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds