Wall clock time and date at job start Tue Mar 31 2020 14:33:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.08994 * 109.39186 * 2 1 4 4 C 1.53047 * 109.47001 * 240.13742 * 2 1 3 5 5 C 1.53374 * 109.79004 * 168.23820 * 4 2 1 6 6 C 1.50947 * 108.20270 * 50.63775 * 5 4 2 7 7 N 1.30131 * 128.28624 * 163.16907 * 6 5 4 8 8 N 1.40314 * 108.12519 * 180.30446 * 7 6 5 9 9 H 0.96998 * 126.00084 * 179.97438 * 8 7 6 10 10 C 1.35196 * 107.99174 * 359.95618 * 8 7 6 11 11 C 1.34569 * 107.61886 * 359.96609 * 10 8 7 12 12 C 1.50886 * 128.32730 * 180.12864 * 11 10 8 13 13 H 1.08994 * 109.72407 * 283.15786 * 12 11 10 14 14 C 1.50702 * 109.71547 * 43.76221 * 12 11 10 15 15 O 1.21281 * 120.00107 * 119.38632 * 14 12 11 16 16 N 1.34777 * 120.00017 * 299.38994 * 14 12 11 17 17 C 1.39271 * 119.99826 * 183.50401 * 16 14 12 18 18 C 1.39677 * 119.57557 * 339.17291 * 17 16 14 19 19 C 1.38657 * 119.49320 * 180.02562 * 18 17 16 20 20 C 1.38341 * 118.66845 * 359.74558 * 19 18 17 21 21 C 1.40585 * 119.13331 * 0.49481 * 20 19 18 22 22 C 1.41336 * 119.78888 * 179.77061 * 21 20 19 23 23 H 1.07996 * 119.99929 * 4.86215 * 22 21 20 24 24 C 1.40024 * 119.99951 * 184.86736 * 22 21 20 25 25 N 1.30738 * 120.00029 * 184.82694 * 24 22 21 26 26 Si 1.86803 * 119.99775 * 4.81963 * 24 22 21 27 27 H 1.48506 * 109.46635 * 180.02562 * 26 24 22 28 28 H 1.48501 * 109.47028 * 60.00796 * 26 24 22 29 29 H 1.48496 * 109.47392 * 299.99950 * 26 24 22 30 30 N 1.31902 * 119.57213 * 159.19091 * 17 16 14 31 31 H 1.09008 * 109.47349 * 300.12633 * 1 2 3 32 32 H 1.08998 * 109.47514 * 60.12495 * 1 2 3 33 33 H 1.08997 * 109.47591 * 180.12715 * 1 2 3 34 34 H 1.09003 * 109.41478 * 48.13920 * 4 2 1 35 35 H 1.08999 * 109.35186 * 288.30576 * 4 2 1 36 36 H 1.09001 * 109.71571 * 290.95996 * 5 4 2 37 37 H 1.08999 * 109.71742 * 170.31428 * 5 4 2 38 38 H 1.07993 * 126.19012 * 179.97438 * 10 8 7 39 39 H 0.96993 * 119.99790 * 3.50664 * 16 14 12 40 40 H 1.07997 * 120.25083 * 359.97438 * 18 17 16 41 41 H 1.08001 * 120.66378 * 180.02562 * 19 18 17 42 42 H 1.08000 * 120.43314 * 180.24959 * 20 19 18 43 43 H 0.97008 * 120.00154 * 354.98339 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8918 1.0281 0.0000 4 6 2.0400 -0.7185 -1.2514 5 6 3.5452 -0.4727 -1.4140 6 6 4.2200 -0.7947 -0.1027 7 7 5.4830 -1.0133 0.1218 8 7 5.6435 -1.2791 1.4901 9 1 6.4807 -1.4775 1.9380 10 6 4.4264 -1.2097 2.0746 11 6 3.5305 -0.9111 1.1158 12 6 2.0402 -0.7206 1.2543 13 1 1.5521 -1.6909 1.3452 14 6 1.7455 0.1129 2.4748 15 8 1.1723 1.1755 2.3595 16 7 2.1189 -0.3225 3.6944 17 6 1.7825 0.4118 4.8290 18 6 1.4636 1.7659 4.7043 19 6 1.1295 2.4954 5.8352 20 6 1.1173 1.8526 7.0601 21 6 1.4528 0.4887 7.1206 22 6 1.4496 -0.1806 8.3655 23 1 1.1147 0.3336 9.2541 24 6 1.8808 -1.5103 8.4465 25 7 1.7895 -2.1593 9.5778 26 14 2.5861 -2.3570 6.9382 27 1 2.9650 -3.7505 7.2847 28 1 3.7871 -1.6184 6.4722 29 1 1.5665 -2.3757 5.8587 30 7 1.7695 -0.1805 6.0075 31 1 -0.3634 0.5158 0.8889 32 1 -0.3634 0.5119 -0.8911 33 1 -0.3634 -1.0276 0.0023 34 1 1.5140 -0.3384 -2.1272 35 1 1.8559 -1.7884 -1.1539 36 1 3.7215 0.5717 -1.6716 37 1 3.9404 -1.1174 -2.1990 38 1 4.2119 -1.3654 3.1215 39 1 2.6219 -1.1472 3.7819 40 1 1.4780 2.2412 3.7347 41 1 0.8793 3.5434 5.7605 42 1 0.8573 2.3924 7.9586 43 1 1.4916 -1.6993 10.3782 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882467721.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:09 Heat of formation + Delta-G solvation = 40.050990 kcal Electronic energy + Delta-G solvation = -27897.617525 eV Core-core repulsion = 24135.698203 eV Total energy + Delta-G solvation = -3761.919322 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.81315 -41.54316 -40.01919 -37.85885 -36.25752 -35.43438 -33.68277 -33.00162 -32.37670 -31.02990 -30.57854 -27.88905 -27.20153 -25.09448 -24.23590 -23.58884 -22.28704 -21.77497 -21.46831 -20.31664 -19.83179 -18.88467 -18.71213 -17.93042 -17.01125 -16.72732 -16.29832 -16.12666 -15.76524 -15.54381 -15.33490 -15.07419 -14.92043 -14.64797 -14.45759 -14.21178 -14.03132 -13.77440 -13.68003 -13.31031 -12.96933 -12.85445 -12.72537 -12.36709 -12.23420 -12.07140 -11.79126 -11.72154 -11.66664 -11.45811 -11.41428 -11.12550 -10.59424 -10.41899 -10.39402 -9.71398 -9.52399 -9.36477 -9.18344 -6.83383 0.50856 0.72625 0.81595 1.47660 1.52183 1.60385 1.73380 1.81147 1.98782 2.10359 2.44887 2.65807 3.31499 3.53574 3.60234 3.68745 3.79440 3.99572 4.10669 4.25631 4.30349 4.39926 4.46497 4.53457 4.62343 4.65699 4.68504 4.73433 4.77626 4.88803 4.97052 5.04254 5.14951 5.20276 5.29707 5.33743 5.38870 5.41493 5.53534 5.56837 5.62407 5.73899 5.80400 5.92615 6.27490 6.31636 6.40345 6.63256 6.64734 7.04721 7.48232 7.93748 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.015255 B = 0.004215 C = 0.003677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1835.032589 B = 6640.639167 C = 7612.562856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.066 4.066 3 H 0.067 0.933 4 C -0.101 4.101 5 C -0.040 4.040 6 C 0.089 3.911 7 N -0.310 5.310 8 N -0.473 5.473 9 H 0.452 0.548 10 C 0.066 3.934 11 C -0.248 4.248 12 C -0.011 4.011 13 H 0.126 0.874 14 C 0.526 3.474 15 O -0.527 6.527 16 N -0.653 5.653 17 C 0.376 3.624 18 C -0.309 4.309 19 C -0.028 4.028 20 C -0.293 4.293 21 C 0.259 3.741 22 C -0.510 4.510 23 H 0.066 0.934 24 C 0.014 3.986 25 N -0.830 5.830 26 Si 1.182 2.818 27 H -0.329 1.329 28 H -0.287 1.287 29 H -0.273 1.273 30 N -0.610 5.610 31 H 0.040 0.960 32 H 0.073 0.927 33 H 0.064 0.936 34 H 0.101 0.899 35 H 0.078 0.922 36 H 0.091 0.909 37 H 0.100 0.900 38 H 0.178 0.822 39 H 0.411 0.589 40 H 0.155 0.845 41 H 0.142 0.858 42 H 0.112 0.888 43 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.523 -0.296 -22.171 22.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.085 4.085 3 H 0.085 0.915 4 C -0.139 4.139 5 C -0.079 4.079 6 C -0.079 4.079 7 N -0.133 5.133 8 N -0.182 5.182 9 H 0.299 0.701 10 C -0.082 4.082 11 C -0.260 4.260 12 C -0.033 4.033 13 H 0.143 0.857 14 C 0.314 3.686 15 O -0.402 6.402 16 N -0.300 5.300 17 C 0.145 3.855 18 C -0.333 4.333 19 C -0.053 4.053 20 C -0.315 4.315 21 C 0.134 3.866 22 C -0.542 4.542 23 H 0.085 0.915 24 C -0.203 4.203 25 N -0.453 5.453 26 Si 1.013 2.987 27 H -0.263 1.263 28 H -0.214 1.214 29 H -0.200 1.200 30 N -0.336 5.336 31 H 0.059 0.941 32 H 0.092 0.908 33 H 0.083 0.917 34 H 0.120 0.880 35 H 0.097 0.903 36 H 0.109 0.891 37 H 0.119 0.881 38 H 0.195 0.805 39 H 0.249 0.751 40 H 0.172 0.828 41 H 0.160 0.840 42 H 0.130 0.870 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 5.001 -1.878 -23.144 23.752 hybrid contribution -0.989 2.071 2.792 3.615 sum 4.012 0.194 -20.351 20.744 Atomic orbital electron populations 1.21875 0.94077 1.02318 1.02318 1.20971 0.96279 0.99261 0.91990 0.91469 1.21637 0.93413 1.01590 0.97247 1.20334 0.94437 1.03209 0.89953 1.22799 0.90090 0.97552 0.97489 1.76977 1.18751 1.24010 0.93514 1.46346 1.08951 1.57008 1.05906 0.70086 1.22344 0.86183 1.00223 0.99469 1.19719 0.95284 1.17246 0.93733 1.19884 0.91948 0.99844 0.91654 0.85684 1.21357 0.76732 0.86611 0.83859 1.90534 1.41051 1.23036 1.85624 1.43602 1.55230 1.26766 1.04438 1.18506 0.92714 0.88713 0.85584 1.22102 1.16764 0.93242 1.01212 1.21357 0.92873 0.99630 0.91400 1.21764 1.15708 0.95652 0.98423 1.18417 0.87705 0.90411 0.90067 1.20724 1.39927 0.99684 0.93914 0.91548 1.28622 0.91240 0.95407 1.04992 1.70670 1.33702 1.39464 1.01512 0.81550 0.76580 0.70339 0.70201 1.26289 1.21447 1.20031 1.65999 1.31185 1.37688 0.98709 0.94088 0.90846 0.91664 0.88037 0.90342 0.89057 0.88145 0.80486 0.75068 0.82774 0.84049 0.86951 0.90914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.72 8.95 71.98 0.64 -2.07 16 2 C -0.07 -1.22 1.77 -10.65 -0.02 -1.23 16 3 H 0.07 1.49 7.76 -2.39 -0.02 1.47 16 4 C -0.10 -1.22 5.18 30.74 0.16 -1.06 16 5 C -0.04 -0.57 6.31 30.05 0.19 -0.38 16 6 C 0.09 1.88 7.10 43.44 0.31 2.19 16 7 N -0.31 -7.19 12.68 -47.13 -0.60 -7.79 16 8 N -0.47 -9.53 7.37 -57.89 -0.43 -9.96 16 9 H 0.45 6.46 8.96 -213.18 -1.91 4.55 16 10 C 0.07 1.42 11.00 83.33 0.92 2.33 16 11 C -0.25 -5.46 5.41 -20.10 -0.11 -5.57 16 12 C -0.01 -0.24 2.33 -12.10 -0.03 -0.27 16 13 H 0.13 2.28 8.13 -2.39 -0.02 2.26 16 14 C 0.53 16.00 6.72 87.66 0.59 16.59 16 15 O -0.53 -18.69 10.94 -3.03 -0.03 -18.73 16 16 N -0.65 -22.28 4.92 -308.35 -1.52 -23.80 16 17 C 0.38 16.26 7.51 133.25 1.00 17.26 16 18 C -0.31 -13.10 8.90 22.72 0.20 -12.90 16 19 C -0.03 -1.18 10.15 22.39 0.23 -0.95 16 20 C -0.29 -13.72 9.83 22.87 0.22 -13.50 16 21 C 0.26 13.50 6.40 40.20 0.26 13.76 16 22 C -0.51 -28.31 9.57 23.47 0.22 -28.09 16 23 H 0.07 3.77 8.05 -2.91 -0.02 3.74 16 24 C 0.01 0.74 5.52 85.29 0.47 1.21 16 25 N -0.83 -45.92 13.65 21.84 0.30 -45.63 16 26 Si 1.18 54.44 25.62 68.60 1.76 56.20 16 27 H -0.33 -14.88 7.11 99.48 0.71 -14.18 16 28 H -0.29 -12.57 7.11 99.48 0.71 -11.86 16 29 H -0.27 -12.18 6.60 99.48 0.66 -11.53 16 30 N -0.61 -29.70 4.54 -186.35 -0.85 -30.55 16 31 H 0.04 1.02 6.38 -2.38 -0.02 1.00 16 32 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.10 0.80 8.09 -2.39 -0.02 0.78 16 35 H 0.08 0.85 8.10 -2.39 -0.02 0.83 16 36 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.18 3.58 5.90 -2.91 -0.02 3.56 16 39 H 0.41 12.19 6.35 -92.71 -0.59 11.60 16 40 H 0.16 6.35 5.17 -9.63 -0.05 6.30 16 41 H 0.14 4.78 8.06 -2.91 -0.02 4.76 16 42 H 0.11 4.97 8.06 -2.91 -0.02 4.94 16 43 H 0.28 15.06 8.72 -92.70 -0.81 14.25 16 Total: -1.00 -68.46 343.47 2.35 -66.12 By element: Atomic # 1 Polarization: 28.36 SS G_CDS: -1.54 Total: 26.82 kcal Atomic # 6 Polarization: -17.94 SS G_CDS: 5.26 Total: -12.68 kcal Atomic # 7 Polarization: -114.64 SS G_CDS: -3.09 Total: -117.73 kcal Atomic # 8 Polarization: -18.69 SS G_CDS: -0.03 Total: -18.73 kcal Atomic # 14 Polarization: 54.44 SS G_CDS: 1.76 Total: 56.20 kcal Total: -68.46 2.35 -66.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882467721.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.168 kcal (2) G-P(sol) polarization free energy of solvation -68.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.117 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds