Wall clock time and date at job start Tue Mar 31 2020 14:39:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 109.54423 * 2 1 4 4 C 1.53137 * 109.50919 * 239.88277 * 2 1 3 5 5 C 1.53235 * 109.51525 * 170.25623 * 4 2 1 6 6 N 1.46576 * 108.78729 * 50.59414 * 5 4 2 7 7 C 1.34864 * 127.50593 * 162.78914 * 6 5 4 8 8 C 1.36604 * 106.78911 * 180.12744 * 7 6 5 9 9 C 1.47280 * 126.21480 * 179.97438 * 8 7 6 10 10 O 1.21613 * 120.00045 * 0.02562 * 9 8 7 11 11 N 1.34780 * 119.99586 * 180.02562 * 9 8 7 12 12 C 1.39172 * 119.99745 * 174.85888 * 11 9 8 13 13 C 1.39691 * 119.57836 * 185.39586 * 12 11 9 14 14 C 1.38647 * 119.49458 * 179.74924 * 13 12 11 15 15 C 1.38353 * 118.67214 * 0.51472 * 14 13 12 16 16 C 1.40578 * 119.13405 * 359.72622 * 15 14 13 17 17 C 1.41328 * 119.78735 * 179.97438 * 16 15 14 18 18 H 1.08003 * 119.99965 * 0.02660 * 17 16 15 19 19 C 1.40029 * 120.00287 * 180.02562 * 17 16 15 20 20 N 1.30751 * 119.99789 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00301 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47205 * 89.99969 * 21 19 17 23 23 H 1.48501 * 109.47031 * 209.99953 * 21 19 17 24 24 H 1.48502 * 109.46828 * 329.99755 * 21 19 17 25 25 N 1.31921 * 119.57357 * 5.66584 * 12 11 9 26 26 N 1.35904 * 107.56696 * 359.96095 * 8 7 6 27 27 C 1.29785 * 108.85487 * 359.97438 * 26 8 7 28 28 C 1.51104 * 127.17331 * 180.11416 * 27 26 8 29 29 H 1.08997 * 109.47219 * 180.11335 * 1 2 3 30 30 H 1.08996 * 109.47063 * 300.11931 * 1 2 3 31 31 H 1.09005 * 109.46920 * 60.11262 * 1 2 3 32 32 H 1.09000 * 109.45451 * 50.24903 * 4 2 1 33 33 H 1.08993 * 109.46433 * 290.27382 * 4 2 1 34 34 H 1.09005 * 109.58680 * 170.37956 * 5 4 2 35 35 H 1.09003 * 109.58867 * 290.66052 * 5 4 2 36 36 H 1.08005 * 126.60481 * 0.16727 * 7 6 5 37 37 H 0.97000 * 119.99946 * 354.85549 * 11 9 8 38 38 H 1.08006 * 120.25345 * 359.97438 * 13 12 11 39 39 H 1.08001 * 120.66424 * 180.23929 * 14 13 12 40 40 H 1.07992 * 120.43296 * 179.70823 * 15 14 13 41 41 H 0.96998 * 120.00220 * 179.97438 * 20 19 17 42 42 H 1.08995 * 109.71758 * 283.70444 * 28 27 26 43 43 H 1.08999 * 109.71895 * 44.30952 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8947 1.0271 0.0000 4 6 2.0415 -0.7243 -1.2486 5 6 3.5542 -0.5164 -1.3774 6 7 4.1873 -0.8517 -0.0986 7 6 5.4906 -1.1136 0.1286 8 6 5.6136 -1.3752 1.4637 9 6 6.8590 -1.7148 2.1728 10 8 7.9079 -1.7824 1.5611 11 7 6.8361 -1.9506 3.4996 12 6 7.9903 -2.3755 4.1508 13 6 7.9306 -2.7260 5.5017 14 6 9.0804 -3.1540 6.1474 15 6 10.2623 -3.2108 5.4304 16 6 10.2587 -2.8399 4.0744 17 6 11.4583 -2.8922 3.3290 18 1 12.3738 -3.2167 3.8013 19 6 11.4600 -2.5232 1.9782 20 7 10.3516 -2.1309 1.4064 21 14 13.0454 -2.5930 0.9929 22 1 13.1826 -3.9341 0.3702 23 1 13.0145 -1.5551 -0.0688 24 1 14.1995 -2.3451 1.8940 25 7 9.1280 -2.4371 3.4857 26 7 4.3780 -1.2649 2.0188 27 6 3.5273 -0.9520 1.0899 28 6 2.0420 -0.7254 1.2508 29 1 -0.3633 -1.0276 0.0020 30 1 -0.3633 0.5157 0.8889 31 1 -0.3633 0.5121 -0.8910 32 1 1.5432 -0.3226 -2.1309 33 1 1.8271 -1.7896 -1.1639 34 1 3.9468 -1.1650 -2.1605 35 1 3.7600 0.5243 -1.6277 36 1 6.2844 -1.1156 -0.6039 37 1 6.0152 -1.8241 4.0006 38 1 6.9950 -2.6674 6.0382 39 1 9.0550 -3.4333 7.1903 40 1 11.1757 -3.5356 5.9062 41 1 10.3528 -1.8749 0.4708 42 1 1.5329 -1.6836 1.3545 43 1 1.8569 -0.1133 2.1335 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882468519.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:39:25 Heat of formation + Delta-G solvation = 52.060442 kcal Electronic energy + Delta-G solvation = -26936.550773 eV Core-core repulsion = 23175.152219 eV Total energy + Delta-G solvation = -3761.398553 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.39342 -40.81389 -39.17648 -37.96288 -35.91696 -34.96453 -34.67346 -32.24341 -31.59601 -30.80515 -30.28429 -27.78620 -27.35285 -25.23009 -24.39162 -23.35274 -22.55285 -22.09571 -20.67801 -20.01962 -19.58063 -18.40203 -17.91536 -17.12889 -16.87716 -16.45162 -16.26770 -15.92162 -15.59240 -15.51648 -15.27435 -14.96180 -14.87599 -14.59438 -14.49153 -14.13565 -13.92669 -13.70216 -13.17966 -13.09348 -12.86983 -12.72104 -12.54972 -12.52320 -12.31666 -11.95534 -11.77128 -11.75819 -11.66377 -11.50227 -11.21912 -10.86402 -10.82818 -10.65204 -9.89998 -9.46236 -9.12222 -8.79942 -8.02891 -6.40966 0.57370 1.00480 1.25858 1.40597 1.50174 1.54725 1.60095 1.67050 2.28305 2.41466 2.71112 3.05663 3.15109 3.56067 3.61775 3.71364 3.94014 4.05646 4.09565 4.28113 4.33942 4.37854 4.42387 4.50136 4.71839 4.74261 4.78055 4.86999 4.87672 4.94293 4.96178 5.00416 5.06517 5.09604 5.15246 5.30067 5.35408 5.46845 5.49225 5.68972 5.86400 5.92382 6.09757 6.18215 6.36610 6.69108 6.80309 6.95323 7.08346 7.65379 8.34367 8.59555 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.017311 B = 0.003129 C = 0.002665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.048905 B = 8947.260194 C =10504.352258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.092 4.092 3 H 0.077 0.923 4 C -0.125 4.125 5 C 0.090 3.910 6 N -0.448 5.448 7 C 0.036 3.964 8 C -0.086 4.086 9 C 0.552 3.448 10 O -0.458 6.458 11 N -0.647 5.647 12 C 0.350 3.650 13 C -0.349 4.349 14 C -0.033 4.033 15 C -0.327 4.327 16 C 0.234 3.766 17 C -0.464 4.464 18 H 0.088 0.912 19 C 0.008 3.992 20 N -0.692 5.692 21 Si 0.980 3.020 22 H -0.266 1.266 23 H -0.272 1.272 24 H -0.256 1.256 25 N -0.508 5.508 26 N -0.492 5.492 27 C 0.209 3.791 28 C -0.027 4.027 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.072 0.928 32 H 0.120 0.880 33 H 0.074 0.926 34 H 0.107 0.893 35 H 0.103 0.897 36 H 0.194 0.806 37 H 0.418 0.582 38 H 0.126 0.874 39 H 0.139 0.861 40 H 0.108 0.892 41 H 0.271 0.729 42 H 0.100 0.900 43 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.904 5.691 -9.753 24.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.111 4.111 3 H 0.096 0.904 4 C -0.162 4.162 5 C -0.029 4.029 6 N -0.130 5.130 7 C -0.104 4.104 8 C -0.214 4.214 9 C 0.337 3.663 10 O -0.325 6.325 11 N -0.294 5.294 12 C 0.112 3.888 13 C -0.375 4.375 14 C -0.057 4.057 15 C -0.350 4.350 16 C 0.108 3.892 17 C -0.494 4.494 18 H 0.106 0.894 19 C -0.217 4.217 20 N -0.311 5.311 21 Si 0.800 3.200 22 H -0.191 1.191 23 H -0.197 1.197 24 H -0.179 1.179 25 N -0.227 5.227 26 N -0.213 5.213 27 C -0.055 4.055 28 C -0.066 4.066 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.091 0.909 32 H 0.139 0.861 33 H 0.093 0.907 34 H 0.125 0.875 35 H 0.121 0.879 36 H 0.211 0.789 37 H 0.255 0.745 38 H 0.143 0.857 39 H 0.157 0.843 40 H 0.126 0.874 41 H 0.082 0.918 42 H 0.119 0.881 43 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -21.461 5.873 -10.667 24.675 hybrid contribution 0.885 -0.227 0.237 0.944 sum -20.576 5.646 -10.430 23.750 Atomic orbital electron populations 1.21763 0.92091 1.02850 1.03064 1.21259 0.97859 0.99414 0.92586 0.90418 1.22023 0.91450 1.02416 1.00333 1.22520 0.95043 1.03729 0.81641 1.45540 1.06133 1.50415 1.10920 1.22487 0.87519 1.03023 0.97387 1.20649 0.92246 1.15510 0.93032 1.17831 0.87554 0.78623 0.82313 1.91211 1.29836 1.45533 1.65917 1.43182 1.11255 1.66288 1.08682 1.19135 0.87789 0.92710 0.89195 1.20953 1.00304 1.21912 0.94285 1.21025 0.91570 0.94177 0.98936 1.21818 0.98800 1.17878 0.96480 1.18958 0.91630 0.88516 0.90066 1.19909 0.94595 1.39330 0.95610 0.89385 1.27112 1.00893 0.94436 0.99297 1.70552 1.27140 1.22232 1.11182 0.85260 0.78080 0.78668 0.77947 1.19064 1.19676 1.17932 1.68697 0.96666 1.21761 1.35624 1.70293 0.99289 1.19503 1.32197 1.24285 0.97823 1.03073 0.80362 1.20541 0.82055 1.03163 1.00816 0.91867 0.91937 0.90897 0.86135 0.90712 0.87468 0.87878 0.78900 0.74534 0.85655 0.84311 0.87359 0.91815 0.88143 0.88262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.71 9.17 71.98 0.66 -0.05 16 2 C -0.09 -0.80 2.74 -10.62 -0.03 -0.83 16 3 H 0.08 0.73 8.12 -2.39 -0.02 0.71 16 4 C -0.12 -0.88 5.24 30.72 0.16 -0.72 16 5 C 0.09 1.06 6.96 86.44 0.60 1.66 16 6 N -0.45 -10.36 3.11 -512.72 -1.60 -11.95 16 7 C 0.04 1.15 11.33 83.84 0.95 2.10 16 8 C -0.09 -3.38 6.98 40.51 0.28 -3.10 16 9 C 0.55 27.13 7.77 86.62 0.67 27.80 16 10 O -0.46 -26.12 12.64 -4.07 -0.05 -26.17 16 11 N -0.65 -31.03 5.38 -311.46 -1.67 -32.70 16 12 C 0.35 19.12 7.42 133.28 0.99 20.11 16 13 C -0.35 -16.79 9.95 22.72 0.23 -16.57 16 14 C -0.03 -1.55 10.15 22.39 0.23 -1.33 16 15 C -0.33 -17.47 9.83 22.87 0.22 -17.24 16 16 C 0.23 14.28 6.55 40.19 0.26 14.54 16 17 C -0.46 -27.42 9.14 23.46 0.21 -27.20 16 18 H 0.09 4.84 7.85 -2.91 -0.02 4.82 16 19 C 0.01 0.44 5.50 85.29 0.47 0.91 16 20 N -0.69 -41.34 8.98 21.84 0.20 -41.14 16 21 Si 0.98 41.75 29.56 68.60 2.03 43.78 16 22 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 23 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 24 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 25 N -0.51 -31.45 5.74 -186.41 -1.07 -32.52 16 26 N -0.49 -16.96 11.00 -176.08 -1.94 -18.90 16 27 C 0.21 5.32 7.64 138.05 1.05 6.38 16 28 C -0.03 -0.41 5.64 30.11 0.17 -0.24 16 29 H 0.06 0.30 8.14 -2.39 -0.02 0.28 16 30 H 0.06 0.33 8.14 -2.39 -0.02 0.31 16 31 H 0.07 0.21 8.14 -2.38 -0.02 0.19 16 32 H 0.12 0.20 8.12 -2.39 -0.02 0.18 16 33 H 0.07 0.62 8.11 -2.39 -0.02 0.60 16 34 H 0.11 0.99 8.14 -2.38 -0.02 0.97 16 35 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.19 5.67 8.06 -2.91 -0.02 5.65 16 37 H 0.42 17.26 8.42 -92.71 -0.78 16.48 16 38 H 0.13 5.08 8.06 -2.91 -0.02 5.06 16 39 H 0.14 5.24 8.06 -2.91 -0.02 5.22 16 40 H 0.11 5.32 8.06 -2.91 -0.02 5.30 16 41 H 0.27 15.09 8.29 -92.71 -0.77 14.32 16 42 H 0.10 1.33 8.11 -2.39 -0.02 1.31 16 43 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 Total: -1.00 -83.29 357.83 3.29 -80.00 By element: Atomic # 1 Polarization: 33.12 SS G_CDS: 0.26 Total: 33.38 kcal Atomic # 6 Polarization: -0.90 SS G_CDS: 7.14 Total: 6.23 kcal Atomic # 7 Polarization: -131.14 SS G_CDS: -6.08 Total: -137.22 kcal Atomic # 8 Polarization: -26.12 SS G_CDS: -0.05 Total: -26.17 kcal Atomic # 14 Polarization: 41.75 SS G_CDS: 2.03 Total: 43.78 kcal Total: -83.29 3.29 -80.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882468519.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.058 kcal (2) G-P(sol) polarization free energy of solvation -83.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.997 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds