Wall clock time and date at job start Tue Mar 31 2020 14:33:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09008 * 109.57619 * 2 1 4 4 C 1.53256 * 109.58173 * 239.60200 * 2 1 3 5 5 C 1.53159 * 109.44359 * 189.97722 * 4 2 1 6 6 C 1.53374 * 109.22817 * 69.33188 * 5 4 2 7 7 C 1.51116 * 108.24559 * 311.14695 * 6 5 4 8 8 N 1.30556 * 127.09082 * 196.09618 * 7 6 5 9 9 C 1.33450 * 109.69106 * 179.64263 * 8 7 6 10 10 C 1.36867 * 107.83132 * 0.41594 * 9 8 7 11 11 C 1.46706 * 126.91911 * 179.89665 * 10 9 8 12 12 O 1.21680 * 120.00145 * 159.76388 * 11 10 9 13 13 N 1.34779 * 119.99467 * 340.03890 * 11 10 9 14 14 C 1.39154 * 119.99864 * 184.42916 * 13 11 10 15 15 C 1.39713 * 119.57150 * 338.37126 * 14 13 11 16 16 C 1.38642 * 119.48855 * 179.73013 * 15 14 13 17 17 C 1.38354 * 118.67667 * 0.53608 * 16 15 14 18 18 C 1.40585 * 119.13321 * 359.72838 * 17 16 15 19 19 C 1.41332 * 119.78782 * 180.02562 * 18 17 16 20 20 H 1.07996 * 119.99962 * 359.97438 * 19 18 17 21 21 C 1.40021 * 119.99728 * 179.97438 * 19 18 17 22 22 N 1.30739 * 120.00477 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 119.99652 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47273 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.47348 * 120.00110 * 23 21 19 26 26 H 1.48506 * 109.46874 * 239.99824 * 23 21 19 27 27 N 1.31919 * 119.58237 * 158.64922 * 14 13 11 28 28 N 1.34882 * 123.91579 * 16.02347 * 7 6 5 29 29 H 1.09004 * 109.47656 * 323.13589 * 1 2 3 30 30 H 1.09006 * 109.47454 * 83.13956 * 1 2 3 31 31 H 1.08999 * 109.47326 * 203.13971 * 1 2 3 32 32 H 1.09007 * 109.47225 * 309.95991 * 4 2 1 33 33 H 1.08997 * 109.47985 * 69.97752 * 4 2 1 34 34 H 1.09007 * 109.51135 * 189.25818 * 5 4 2 35 35 H 1.08997 * 109.50999 * 309.40289 * 5 4 2 36 36 H 1.09003 * 109.71128 * 70.83399 * 6 5 4 37 37 H 1.09001 * 109.71129 * 191.46146 * 6 5 4 38 38 H 1.08005 * 126.08501 * 180.26519 * 9 8 7 39 39 H 0.96998 * 120.00644 * 4.42389 * 13 11 10 40 40 H 1.07995 * 120.25898 * 0.02562 * 15 14 13 41 41 H 1.07996 * 120.66669 * 180.26610 * 16 15 14 42 42 H 1.07997 * 120.43777 * 179.75097 * 17 16 15 43 43 H 0.97000 * 120.00317 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8952 1.0271 0.0000 4 6 2.0436 -0.7306 -1.2454 5 6 3.5546 -0.9483 -1.1219 6 6 3.8281 -1.9781 -0.0188 7 6 3.0395 -1.5791 1.2070 8 7 3.2120 -2.0077 2.4281 9 6 2.3290 -1.4217 3.2392 10 6 1.5542 -0.5858 2.4815 11 6 0.4524 0.2615 2.9510 12 8 0.0882 1.2113 2.2833 13 7 -0.1527 -0.0091 4.1244 14 6 -1.2566 0.7368 4.5263 15 6 -1.4639 2.0080 3.9849 16 6 -2.5674 2.7473 4.3822 17 6 -3.4291 2.2033 5.3180 18 6 -3.1628 0.9213 5.8298 19 6 -4.0342 0.3521 6.7859 20 1 -4.9011 0.9019 7.1213 21 6 -3.7736 -0.9247 7.2981 22 7 -2.7244 -1.5906 6.8917 23 14 -4.9257 -1.6774 8.5613 24 1 -6.0302 -0.7281 8.8516 25 1 -5.4883 -2.9432 8.0261 26 1 -4.1743 -1.9589 9.8109 27 7 -2.0909 0.2369 5.4175 28 7 2.0207 -0.6953 1.1917 29 1 -0.3634 0.8222 0.6165 30 1 -0.3634 0.1228 -1.0203 31 1 -0.3634 -0.9450 0.4038 32 1 1.5435 -1.6953 -1.3329 33 1 1.8339 -0.1308 -2.1310 34 1 3.9480 -1.3166 -2.0695 35 1 4.0386 -0.0053 -0.8679 36 1 3.5132 -2.9669 -0.3526 37 1 4.8922 -1.9907 0.2168 38 1 2.2398 -1.5809 4.3038 39 1 0.1811 -0.7238 4.6889 40 1 -0.7726 2.4096 3.2589 41 1 -2.7483 3.7302 3.9728 42 1 -4.2951 2.7561 5.6507 43 1 -2.5437 -2.4749 7.2468 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882471243.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:41 Heat of formation + Delta-G solvation = 71.831585 kcal Electronic energy + Delta-G solvation = -27474.417209 eV Core-core repulsion = 23713.875997 eV Total energy + Delta-G solvation = -3760.541212 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.52580 -39.67519 -37.68490 -37.24201 -34.49249 -33.71972 -33.33008 -30.78501 -30.48534 -30.08345 -28.67971 -27.14119 -25.51509 -23.65235 -23.01497 -22.10586 -21.64823 -21.36153 -19.76946 -19.11997 -17.89480 -17.47315 -16.21886 -16.20254 -15.63006 -15.26057 -14.95733 -14.84996 -14.74526 -14.49022 -14.21077 -14.07265 -13.57593 -13.38077 -13.07164 -12.90642 -12.63336 -12.30654 -12.10742 -12.03207 -11.73616 -11.44552 -11.41966 -11.29115 -11.15922 -10.96864 -10.84380 -10.67432 -10.18907 -10.05942 -9.85567 -9.66610 -9.27480 -8.93057 -8.41634 -8.08233 -7.73207 -7.16895 -6.44237 -4.54079 1.37496 2.44381 2.61492 2.85911 3.01931 3.08561 3.12631 3.20980 3.48133 3.67050 3.93428 4.05758 4.25258 4.35036 4.40240 4.74426 4.85977 4.94695 5.00064 5.05702 5.20159 5.33031 5.38114 5.42447 5.47307 5.59137 5.68713 5.75550 5.85883 5.93973 6.09682 6.20450 6.23733 6.49323 6.56530 6.72074 6.76614 6.86026 7.05666 7.11644 7.41969 7.45650 7.78187 7.85904 7.95329 8.07387 8.25382 8.56619 8.67450 8.92149 9.99493 10.28351 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.019188 B = 0.003190 C = 0.002890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.863560 B = 8775.596918 C = 9687.159281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.136 3.864 3 H 0.096 0.904 4 C -0.133 4.133 5 C -0.127 4.127 6 C -0.034 4.034 7 C 0.221 3.779 8 N -0.492 5.492 9 C 0.032 3.968 10 C -0.070 4.070 11 C 0.592 3.408 12 O -0.518 6.518 13 N -0.628 5.628 14 C 0.356 3.644 15 C -0.314 4.314 16 C -0.051 4.051 17 C -0.286 4.286 18 C 0.278 3.722 19 C -0.433 4.433 20 H 0.086 0.914 21 C 0.070 3.930 22 N -0.720 5.720 23 Si 0.907 3.093 24 H -0.261 1.261 25 H -0.274 1.274 26 H -0.273 1.273 27 N -0.504 5.504 28 N -0.416 5.416 29 H 0.116 0.884 30 H 0.068 0.932 31 H 0.056 0.944 32 H 0.076 0.924 33 H 0.090 0.910 34 H 0.083 0.917 35 H 0.071 0.929 36 H 0.091 0.909 37 H 0.097 0.903 38 H 0.180 0.820 39 H 0.410 0.590 40 H 0.137 0.863 41 H 0.099 0.901 42 H 0.100 0.900 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.811 -1.612 -13.380 17.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.034 3.966 3 H 0.114 0.886 4 C -0.170 4.170 5 C -0.165 4.165 6 C -0.072 4.072 7 C -0.041 4.041 8 N -0.210 5.210 9 C -0.121 4.121 10 C -0.187 4.187 11 C 0.379 3.621 12 O -0.397 6.397 13 N -0.271 5.271 14 C 0.121 3.879 15 C -0.339 4.339 16 C -0.076 4.076 17 C -0.309 4.309 18 C 0.151 3.849 19 C -0.465 4.465 20 H 0.104 0.896 21 C -0.154 4.154 22 N -0.342 5.342 23 Si 0.731 3.269 24 H -0.184 1.184 25 H -0.199 1.199 26 H -0.198 1.198 27 N -0.223 5.223 28 N -0.097 5.097 29 H 0.134 0.866 30 H 0.087 0.913 31 H 0.075 0.925 32 H 0.095 0.905 33 H 0.108 0.892 34 H 0.102 0.898 35 H 0.090 0.910 36 H 0.110 0.890 37 H 0.115 0.885 38 H 0.197 0.803 39 H 0.246 0.754 40 H 0.155 0.845 41 H 0.117 0.883 42 H 0.118 0.882 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 11.316 -2.458 -13.398 17.708 hybrid contribution -1.167 0.560 0.409 1.357 sum 10.149 -1.898 -12.989 16.593 Atomic orbital electron populations 1.22697 0.92107 1.05757 1.03843 1.21662 0.96848 0.96284 0.81851 0.88604 1.22063 0.96197 1.01915 0.96865 1.21724 0.95946 0.99779 0.99096 1.20257 0.99369 0.99623 0.88000 1.23411 0.91681 0.93179 0.95791 1.69908 1.25367 1.26065 0.99689 1.22745 0.94054 0.95512 0.99837 1.20545 1.04171 1.08350 0.85653 1.16574 0.80689 0.83858 0.80992 1.90497 1.64909 1.28798 1.55461 1.42756 1.28698 1.35873 1.19753 1.18416 0.87466 0.87699 0.94272 1.21804 1.04378 0.96206 1.11488 1.20828 0.94030 0.97405 0.95295 1.21744 1.03476 0.99606 1.06028 1.18183 0.88418 0.87735 0.90520 1.19606 1.08160 1.00007 1.18744 0.89602 1.26042 0.95379 0.97192 0.96817 1.70109 1.21578 1.09864 1.32654 0.86281 0.80824 0.79465 0.80299 1.18426 1.19904 1.19849 1.68036 1.04910 1.34289 1.15033 1.45320 1.25192 1.32207 1.07004 0.86618 0.91321 0.92491 0.90530 0.89153 0.89822 0.91002 0.89041 0.88455 0.80258 0.75404 0.84534 0.88318 0.88199 0.91765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.47 8.21 37.15 0.31 -2.17 16 2 C 0.14 1.58 3.27 -67.83 -0.22 1.36 16 3 H 0.10 1.12 8.14 -51.92 -0.42 0.69 16 4 C -0.13 -1.04 5.14 -26.52 -0.14 -1.18 16 5 C -0.13 -0.85 5.96 -26.46 -0.16 -1.01 16 6 C -0.03 -0.29 6.33 -27.49 -0.17 -0.46 16 7 C 0.22 2.93 7.64 -155.31 -1.19 1.74 16 8 N -0.49 -7.52 11.19 -10.34 -0.12 -7.64 16 9 C 0.03 0.50 11.38 -17.34 -0.20 0.30 16 10 C -0.07 -1.13 6.60 -82.36 -0.54 -1.68 16 11 C 0.59 11.07 7.09 -12.84 -0.09 10.98 16 12 O -0.52 -10.35 9.55 5.21 0.05 -10.30 16 13 N -0.63 -12.76 5.39 -12.58 -0.07 -12.82 16 14 C 0.36 8.68 7.50 -155.06 -1.16 7.51 16 15 C -0.31 -7.47 8.90 -38.88 -0.35 -7.81 16 16 C -0.05 -1.18 10.15 -39.39 -0.40 -1.58 16 17 C -0.29 -7.07 9.83 -38.65 -0.38 -7.45 16 18 C 0.28 7.56 6.55 -85.00 -0.56 7.00 16 19 C -0.43 -11.44 9.14 -37.74 -0.34 -11.78 16 20 H 0.09 2.13 7.85 -52.49 -0.41 1.71 16 21 C 0.07 1.76 5.50 -17.35 -0.10 1.67 16 22 N -0.72 -18.60 11.46 55.55 0.64 -17.96 16 23 Si 0.91 18.36 29.56 -169.99 -5.02 13.33 16 24 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 25 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 26 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 27 N -0.50 -13.60 7.89 -10.27 -0.08 -13.68 16 28 N -0.42 -5.84 2.97 -102.74 -0.31 -6.14 16 29 H 0.12 1.90 4.73 -52.10 -0.25 1.65 16 30 H 0.07 0.72 7.95 -51.93 -0.41 0.31 16 31 H 0.06 0.85 8.08 -51.93 -0.42 0.43 16 32 H 0.08 0.62 8.09 -51.92 -0.42 0.20 16 33 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.08 0.37 8.14 -51.92 -0.42 -0.05 16 35 H 0.07 0.50 8.12 -51.93 -0.42 0.08 16 36 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.18 2.36 7.73 -52.48 -0.41 1.96 16 39 H 0.41 7.63 8.04 -40.82 -0.33 7.30 16 40 H 0.14 3.16 5.18 -52.68 -0.27 2.89 16 41 H 0.10 1.97 8.06 -52.49 -0.42 1.54 16 42 H 0.10 2.27 8.06 -52.49 -0.42 1.84 16 43 H 0.27 6.34 8.29 -40.82 -0.34 6.00 16 LS Contribution 349.41 15.07 5.27 5.27 Total: -1.00 -31.41 349.41 -10.76 -42.18 By element: Atomic # 1 Polarization: 17.76 SS G_CDS: -5.43 Total: 12.32 kcal Atomic # 6 Polarization: 1.13 SS G_CDS: -5.69 Total: -4.56 kcal Atomic # 7 Polarization: -58.31 SS G_CDS: 0.07 Total: -58.24 kcal Atomic # 8 Polarization: -10.35 SS G_CDS: 0.05 Total: -10.30 kcal Atomic # 14 Polarization: 18.36 SS G_CDS: -5.02 Total: 13.33 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.41 -10.76 -42.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882471243.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.011 kcal (2) G-P(sol) polarization free energy of solvation -31.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.179 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds