Wall clock time and date at job start Tue Mar 31 2020 14:33:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09008 * 109.57619 * 2 1 4 4 C 1.53256 * 109.58173 * 239.60200 * 2 1 3 5 5 C 1.53159 * 109.44359 * 189.97722 * 4 2 1 6 6 C 1.53374 * 109.22817 * 69.33188 * 5 4 2 7 7 C 1.51116 * 108.24559 * 311.14695 * 6 5 4 8 8 N 1.30556 * 127.09082 * 196.09618 * 7 6 5 9 9 C 1.33450 * 109.69106 * 179.64263 * 8 7 6 10 10 C 1.36867 * 107.83132 * 0.41594 * 9 8 7 11 11 C 1.46706 * 126.91911 * 179.89665 * 10 9 8 12 12 O 1.21680 * 120.00145 * 159.76388 * 11 10 9 13 13 N 1.34779 * 119.99467 * 340.03890 * 11 10 9 14 14 C 1.39154 * 119.99864 * 184.42916 * 13 11 10 15 15 C 1.39713 * 119.57150 * 338.37126 * 14 13 11 16 16 C 1.38642 * 119.48855 * 179.73013 * 15 14 13 17 17 C 1.38354 * 118.67667 * 0.53608 * 16 15 14 18 18 C 1.40585 * 119.13321 * 359.72838 * 17 16 15 19 19 C 1.41332 * 119.78782 * 180.02562 * 18 17 16 20 20 H 1.07996 * 119.99962 * 359.97438 * 19 18 17 21 21 C 1.40021 * 119.99728 * 179.97438 * 19 18 17 22 22 N 1.30739 * 120.00477 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 119.99652 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47273 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.47348 * 120.00110 * 23 21 19 26 26 H 1.48506 * 109.46874 * 239.99824 * 23 21 19 27 27 N 1.31919 * 119.58237 * 158.64922 * 14 13 11 28 28 N 1.34882 * 123.91579 * 16.02347 * 7 6 5 29 29 H 1.09004 * 109.47656 * 323.13589 * 1 2 3 30 30 H 1.09006 * 109.47454 * 83.13956 * 1 2 3 31 31 H 1.08999 * 109.47326 * 203.13971 * 1 2 3 32 32 H 1.09007 * 109.47225 * 309.95991 * 4 2 1 33 33 H 1.08997 * 109.47985 * 69.97752 * 4 2 1 34 34 H 1.09007 * 109.51135 * 189.25818 * 5 4 2 35 35 H 1.08997 * 109.50999 * 309.40289 * 5 4 2 36 36 H 1.09003 * 109.71128 * 70.83399 * 6 5 4 37 37 H 1.09001 * 109.71129 * 191.46146 * 6 5 4 38 38 H 1.08005 * 126.08501 * 180.26519 * 9 8 7 39 39 H 0.96998 * 120.00644 * 4.42389 * 13 11 10 40 40 H 1.07995 * 120.25898 * 0.02562 * 15 14 13 41 41 H 1.07996 * 120.66669 * 180.26610 * 16 15 14 42 42 H 1.07997 * 120.43777 * 179.75097 * 17 16 15 43 43 H 0.97000 * 120.00317 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8952 1.0271 0.0000 4 6 2.0436 -0.7306 -1.2454 5 6 3.5546 -0.9483 -1.1219 6 6 3.8281 -1.9781 -0.0188 7 6 3.0395 -1.5791 1.2070 8 7 3.2120 -2.0077 2.4281 9 6 2.3290 -1.4217 3.2392 10 6 1.5542 -0.5858 2.4815 11 6 0.4524 0.2615 2.9510 12 8 0.0882 1.2113 2.2833 13 7 -0.1527 -0.0091 4.1244 14 6 -1.2566 0.7368 4.5263 15 6 -1.4639 2.0080 3.9849 16 6 -2.5674 2.7473 4.3822 17 6 -3.4291 2.2033 5.3180 18 6 -3.1628 0.9213 5.8298 19 6 -4.0342 0.3521 6.7859 20 1 -4.9011 0.9019 7.1213 21 6 -3.7736 -0.9247 7.2981 22 7 -2.7244 -1.5906 6.8917 23 14 -4.9257 -1.6774 8.5613 24 1 -6.0302 -0.7281 8.8516 25 1 -5.4883 -2.9432 8.0261 26 1 -4.1743 -1.9589 9.8109 27 7 -2.0909 0.2369 5.4175 28 7 2.0207 -0.6953 1.1917 29 1 -0.3634 0.8222 0.6165 30 1 -0.3634 0.1228 -1.0203 31 1 -0.3634 -0.9450 0.4038 32 1 1.5435 -1.6953 -1.3329 33 1 1.8339 -0.1308 -2.1310 34 1 3.9480 -1.3166 -2.0695 35 1 4.0386 -0.0053 -0.8679 36 1 3.5132 -2.9669 -0.3526 37 1 4.8922 -1.9907 0.2168 38 1 2.2398 -1.5809 4.3038 39 1 0.1811 -0.7238 4.6889 40 1 -0.7726 2.4096 3.2589 41 1 -2.7483 3.7302 3.9728 42 1 -4.2951 2.7561 5.6507 43 1 -2.5437 -2.4749 7.2468 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882471243.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:40 Heat of formation + Delta-G solvation = 54.031586 kcal Electronic energy + Delta-G solvation = -27475.189075 eV Core-core repulsion = 23713.875997 eV Total energy + Delta-G solvation = -3761.313078 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.63474 -41.30368 -39.46644 -38.11054 -36.13176 -35.15969 -34.65891 -32.36934 -31.81843 -31.65877 -30.08110 -28.13522 -27.34162 -24.99196 -23.97848 -23.53149 -23.02615 -22.91755 -21.21377 -20.11100 -19.41250 -19.13479 -17.91455 -17.45937 -16.84559 -16.62703 -16.58172 -16.25851 -15.95793 -15.64508 -15.52342 -15.08569 -15.04748 -14.62480 -14.43053 -14.28006 -13.95109 -13.83055 -13.34926 -13.30339 -12.95068 -12.89709 -12.69711 -12.64203 -12.54218 -12.05920 -12.02990 -11.84929 -11.82331 -11.46708 -11.31913 -11.05680 -10.75740 -10.52604 -10.00538 -9.66667 -9.59110 -9.01833 -8.31614 -6.52385 0.08095 0.87368 1.11338 1.28721 1.42518 1.53000 1.57424 1.74821 2.10214 2.19799 2.23646 2.86221 3.19080 3.44773 3.48620 3.63454 3.73444 3.89960 4.01554 4.13511 4.26480 4.28655 4.32269 4.43265 4.54204 4.57517 4.69797 4.84146 4.84890 4.87899 4.89830 4.92703 4.94410 5.05011 5.14752 5.22079 5.27647 5.34075 5.40614 5.59840 5.65146 5.91946 6.03177 6.05376 6.23371 6.41766 6.75066 6.79683 6.91159 7.08670 8.07020 8.43818 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.019188 B = 0.003190 C = 0.002890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.863560 B = 8775.596918 C = 9687.159281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.129 3.871 3 H 0.094 0.906 4 C -0.126 4.126 5 C -0.120 4.120 6 C -0.036 4.036 7 C 0.233 3.767 8 N -0.518 5.518 9 C 0.036 3.964 10 C -0.099 4.099 11 C 0.595 3.405 12 O -0.532 6.532 13 N -0.630 5.630 14 C 0.347 3.653 15 C -0.324 4.324 16 C -0.048 4.048 17 C -0.304 4.304 18 C 0.244 3.756 19 C -0.463 4.463 20 H 0.092 0.908 21 C 0.025 3.975 22 N -0.753 5.753 23 Si 0.988 3.012 24 H -0.254 1.254 25 H -0.268 1.268 26 H -0.266 1.266 27 N -0.532 5.532 28 N -0.419 5.419 29 H 0.081 0.919 30 H 0.097 0.903 31 H 0.033 0.967 32 H 0.076 0.924 33 H 0.117 0.883 34 H 0.118 0.882 35 H 0.070 0.930 36 H 0.109 0.891 37 H 0.113 0.887 38 H 0.191 0.809 39 H 0.415 0.585 40 H 0.143 0.857 41 H 0.133 0.867 42 H 0.114 0.886 43 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.782 -2.338 -15.091 19.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.028 3.972 3 H 0.112 0.888 4 C -0.163 4.163 5 C -0.158 4.158 6 C -0.075 4.075 7 C -0.029 4.029 8 N -0.237 5.237 9 C -0.118 4.118 10 C -0.216 4.216 11 C 0.384 3.616 12 O -0.411 6.411 13 N -0.273 5.273 14 C 0.113 3.887 15 C -0.349 4.349 16 C -0.073 4.073 17 C -0.327 4.327 18 C 0.118 3.882 19 C -0.495 4.495 20 H 0.111 0.889 21 C -0.197 4.197 22 N -0.375 5.375 23 Si 0.808 3.192 24 H -0.178 1.178 25 H -0.193 1.193 26 H -0.191 1.191 27 N -0.252 5.252 28 N -0.100 5.100 29 H 0.100 0.900 30 H 0.115 0.885 31 H 0.052 0.948 32 H 0.095 0.905 33 H 0.135 0.865 34 H 0.137 0.863 35 H 0.089 0.911 36 H 0.127 0.873 37 H 0.131 0.869 38 H 0.208 0.792 39 H 0.252 0.748 40 H 0.160 0.840 41 H 0.150 0.850 42 H 0.132 0.868 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 12.309 -3.164 -15.144 19.771 hybrid contribution -1.367 0.796 0.822 1.783 sum 10.942 -2.368 -14.323 18.179 Atomic orbital electron populations 1.22553 0.93662 1.02829 1.04622 1.21915 0.95640 0.96912 0.82772 0.88772 1.22101 0.97036 1.01810 0.95380 1.21745 0.94872 0.99273 0.99885 1.20607 0.99461 1.01001 0.86402 1.24465 0.90640 0.91195 0.96638 1.69965 1.25947 1.27044 1.00737 1.23032 0.93545 0.94666 1.00569 1.20209 1.04492 1.09570 0.87323 1.16866 0.80767 0.83886 0.80100 1.90489 1.65548 1.29567 1.55521 1.42736 1.28084 1.35937 1.20591 1.18746 0.87965 0.88358 0.93680 1.22033 1.04931 0.96254 1.11665 1.21198 0.93111 0.98584 0.94359 1.21927 1.04571 0.99314 1.06840 1.18697 0.89079 0.89021 0.91415 1.19976 1.08694 1.01301 1.19541 0.88947 1.26963 0.96972 0.97079 0.98641 1.70194 1.23102 1.10436 1.33745 0.85072 0.78439 0.78380 0.77278 1.17767 1.19335 1.19090 1.68047 1.05665 1.35140 1.16311 1.45549 1.25288 1.32445 1.06732 0.90048 0.88460 0.94807 0.90494 0.86467 0.86323 0.91130 0.87328 0.86923 0.79187 0.74831 0.84000 0.84960 0.86757 0.91034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.74 8.21 71.98 0.59 -4.15 16 2 C 0.13 2.85 3.27 45.09 0.15 2.99 16 3 H 0.09 2.11 8.14 -2.38 -0.02 2.09 16 4 C -0.13 -1.56 5.14 30.73 0.16 -1.40 16 5 C -0.12 -1.10 5.96 30.77 0.18 -0.92 16 6 C -0.04 -0.49 6.33 30.11 0.19 -0.30 16 7 C 0.23 5.80 7.64 138.29 1.06 6.85 16 8 N -0.52 -15.47 11.19 -186.63 -2.09 -17.56 16 9 C 0.04 1.13 11.38 84.13 0.96 2.09 16 10 C -0.10 -3.29 6.60 40.13 0.26 -3.02 16 11 C 0.59 23.16 7.09 86.45 0.61 23.77 16 12 O -0.53 -22.05 9.55 -4.28 -0.04 -22.10 16 13 N -0.63 -26.82 5.39 -311.94 -1.68 -28.51 16 14 C 0.35 17.63 7.50 133.30 1.00 18.63 16 15 C -0.32 -15.81 8.90 22.72 0.20 -15.60 16 16 C -0.05 -2.25 10.15 22.39 0.23 -2.02 16 17 C -0.30 -15.35 9.83 22.87 0.22 -15.12 16 18 C 0.24 13.74 6.55 40.19 0.26 14.01 16 19 C -0.46 -25.10 9.14 23.46 0.21 -24.88 16 20 H 0.09 4.67 7.85 -2.91 -0.02 4.64 16 21 C 0.03 1.28 5.50 85.29 0.47 1.75 16 22 N -0.75 -39.85 11.46 21.84 0.25 -39.60 16 23 Si 0.99 37.84 29.56 68.60 2.03 39.86 16 24 H -0.25 -9.37 7.11 99.48 0.71 -8.67 16 25 H -0.27 -9.97 7.11 99.48 0.71 -9.26 16 26 H -0.27 -9.81 7.11 99.48 0.71 -9.10 16 27 N -0.53 -29.88 7.89 -186.40 -1.47 -31.35 16 28 N -0.42 -11.52 2.97 -478.95 -1.42 -12.95 16 29 H 0.08 2.77 4.73 -7.74 -0.04 2.73 16 30 H 0.10 1.92 7.95 -2.38 -0.02 1.90 16 31 H 0.03 1.02 8.08 -2.39 -0.02 1.00 16 32 H 0.08 0.99 8.09 -2.38 -0.02 0.97 16 33 H 0.12 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.12 0.38 8.14 -2.38 -0.02 0.36 16 35 H 0.07 0.72 8.12 -2.39 -0.02 0.70 16 36 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.19 5.17 7.73 -2.91 -0.02 5.15 16 39 H 0.41 16.35 8.04 -92.71 -0.75 15.61 16 40 H 0.14 6.72 5.18 -8.68 -0.04 6.68 16 41 H 0.13 5.14 8.06 -2.91 -0.02 5.11 16 42 H 0.11 5.25 8.06 -2.91 -0.02 5.23 16 43 H 0.28 13.29 8.29 -92.71 -0.77 12.52 16 Total: -1.00 -71.17 349.41 2.59 -68.58 By element: Atomic # 1 Polarization: 40.68 SS G_CDS: 0.26 Total: 40.94 kcal Atomic # 6 Polarization: -4.09 SS G_CDS: 6.76 Total: 2.67 kcal Atomic # 7 Polarization: -123.55 SS G_CDS: -6.42 Total: -129.97 kcal Atomic # 8 Polarization: -22.05 SS G_CDS: -0.04 Total: -22.10 kcal Atomic # 14 Polarization: 37.84 SS G_CDS: 2.03 Total: 39.86 kcal Total: -71.17 2.59 -68.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882471243.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.615 kcal (2) G-P(sol) polarization free energy of solvation -71.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.583 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds