Wall clock time and date at job start Tue Mar 31 2020 14:33:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.58261 * 2 1 4 4 C 1.53268 * 109.57988 * 120.26411 * 2 1 3 5 5 C 1.53222 * 109.41503 * 169.87417 * 4 2 1 6 6 C 1.53373 * 109.34133 * 290.85098 * 5 4 2 7 7 C 1.51110 * 108.24119 * 48.83850 * 6 5 4 8 8 N 1.30564 * 127.08804 * 163.89422 * 7 6 5 9 9 C 1.33447 * 109.68824 * 180.02562 * 8 7 6 10 10 C 1.36863 * 107.83238 * 359.97438 * 9 8 7 11 11 C 1.46713 * 126.91509 * 180.02562 * 10 9 8 12 12 O 1.21681 * 120.00172 * 200.08350 * 11 10 9 13 13 N 1.34780 * 119.99819 * 20.08675 * 11 10 9 14 14 C 1.39150 * 119.99695 * 184.67419 * 13 11 10 15 15 C 1.39704 * 119.57743 * 338.46418 * 14 13 11 16 16 C 1.38641 * 119.49455 * 179.70888 * 15 14 13 17 17 C 1.38363 * 118.66822 * 0.55629 * 16 15 14 18 18 C 1.40575 * 119.13569 * 359.73022 * 17 16 15 19 19 C 1.41331 * 119.78343 * 180.02562 * 18 17 16 20 20 H 1.07994 * 120.00285 * 359.97262 * 19 18 17 21 21 C 1.40032 * 119.99759 * 179.97438 * 19 18 17 22 22 N 1.30745 * 120.00175 * 359.97438 * 21 19 18 23 23 Si 1.86794 * 119.99963 * 179.97438 * 21 19 18 24 24 H 1.48507 * 109.47249 * 89.99773 * 23 21 19 25 25 H 1.48506 * 109.47439 * 209.99775 * 23 21 19 26 26 H 1.48501 * 109.47389 * 329.99649 * 23 21 19 27 27 N 1.31924 * 119.57738 * 158.73776 * 14 13 11 28 28 N 1.34884 * 123.92034 * 343.94329 * 7 6 5 29 29 H 1.08996 * 109.47583 * 156.81636 * 1 2 3 30 30 H 1.09001 * 109.46954 * 276.81931 * 1 2 3 31 31 H 1.09007 * 109.47097 * 36.81496 * 1 2 3 32 32 H 1.08997 * 109.47656 * 289.99981 * 4 2 1 33 33 H 1.09008 * 109.47075 * 50.01344 * 4 2 1 34 34 H 1.09004 * 109.48186 * 170.86991 * 5 4 2 35 35 H 1.09003 * 109.42149 * 50.79588 * 5 4 2 36 36 H 1.09001 * 109.70988 * 289.14564 * 6 5 4 37 37 H 1.09005 * 109.70912 * 168.52329 * 6 5 4 38 38 H 1.08003 * 126.08451 * 180.02562 * 9 8 7 39 39 H 0.97000 * 120.00263 * 4.67030 * 13 11 10 40 40 H 1.07996 * 120.25652 * 0.02562 * 15 14 13 41 41 H 1.07997 * 120.66648 * 180.26338 * 16 15 14 42 42 H 1.08009 * 120.42894 * 179.75238 * 17 16 15 43 43 H 0.96990 * 119.99816 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0436 -0.7278 1.2472 5 6 3.5546 -0.9488 1.1219 6 6 3.8275 -1.9790 0.0189 7 6 3.0393 -1.5795 -1.2069 8 7 3.2117 -2.0082 -2.4280 9 6 2.3245 -1.4272 -3.2380 10 6 1.5527 -0.5878 -2.4810 11 6 0.4490 0.2573 -2.9500 12 8 0.0856 1.2086 -2.2840 13 7 -0.1624 -0.0200 -4.1187 14 6 -1.1427 0.8359 -4.6113 15 6 -1.8083 1.6981 -3.7365 16 6 -2.7805 2.5545 -4.2301 17 6 -3.0711 2.5197 -5.5824 18 6 -2.3706 1.6252 -6.4102 19 6 -2.6561 1.5786 -7.7936 20 1 -3.4106 2.2285 -8.2115 21 6 -1.9606 0.6897 -8.6224 22 7 -1.0469 -0.0969 -8.1167 23 14 -2.3384 0.6276 -10.4507 24 1 -1.4659 1.5906 -11.1695 25 1 -2.0879 -0.7441 -10.9617 26 1 -3.7618 0.9868 -10.6746 27 7 -1.4355 0.8190 -5.8975 28 7 2.0207 -0.6955 -1.1917 29 1 -0.3634 -0.9446 -0.4045 30 1 -0.3633 0.1220 1.0204 31 1 -0.3634 0.8228 -0.6158 32 1 1.8342 -0.1257 2.1314 33 1 1.5431 -1.6920 1.3372 34 1 3.9480 -1.3170 2.0695 35 1 4.0389 -0.0060 0.8676 36 1 3.5121 -2.9674 0.3529 37 1 4.8918 -1.9922 -0.2166 38 1 2.2313 -1.5908 -4.3015 39 1 0.0809 -0.8163 -4.6164 40 1 -1.5639 1.7012 -2.6845 41 1 -3.3038 3.2318 -3.5715 42 1 -3.8261 3.1716 -5.9966 43 1 -0.5649 -0.7123 -8.6909 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882471244.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:44 Heat of formation + Delta-G solvation = 71.801724 kcal Electronic energy + Delta-G solvation = -27444.196074 eV Core-core repulsion = 23683.653567 eV Total energy + Delta-G solvation = -3760.542507 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.52679 -39.67402 -37.68048 -37.24661 -34.48916 -33.72383 -33.32642 -30.79773 -30.47692 -30.08914 -28.67699 -27.15415 -25.52332 -23.64464 -23.02066 -22.10970 -21.64718 -21.36469 -19.78193 -19.10800 -17.89853 -17.49571 -16.22102 -16.17889 -15.65649 -15.20400 -14.94402 -14.87176 -14.75633 -14.46296 -14.19154 -14.04180 -13.70007 -13.45517 -13.03296 -12.88997 -12.62556 -12.33010 -12.13224 -12.02429 -11.74988 -11.45713 -11.42803 -11.27376 -11.16201 -10.97269 -10.83964 -10.68527 -10.18906 -10.09212 -9.78671 -9.66906 -9.22553 -9.00351 -8.41162 -8.07127 -7.72779 -7.17856 -6.43886 -4.53724 1.37428 2.41817 2.65130 2.86683 3.01264 3.08633 3.11407 3.22010 3.54097 3.61702 3.93847 4.05443 4.23990 4.34229 4.38946 4.74725 4.86180 4.93726 4.99033 5.04545 5.20183 5.33492 5.37044 5.41650 5.45950 5.58164 5.66632 5.73839 5.86653 5.90979 6.08262 6.20000 6.22891 6.46667 6.57608 6.72404 6.76747 6.84492 7.05555 7.12002 7.42110 7.45844 7.78298 7.85596 7.95607 8.07536 8.25290 8.57017 8.67760 8.92448 9.99830 10.28824 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.020879 B = 0.003155 C = 0.002772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.761900 B = 8871.846692 C =10097.800253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.135 3.865 3 H 0.096 0.904 4 C -0.132 4.132 5 C -0.128 4.128 6 C -0.033 4.033 7 C 0.221 3.779 8 N -0.492 5.492 9 C 0.035 3.965 10 C -0.071 4.071 11 C 0.592 3.408 12 O -0.518 6.518 13 N -0.628 5.628 14 C 0.356 3.644 15 C -0.314 4.314 16 C -0.051 4.051 17 C -0.286 4.286 18 C 0.278 3.722 19 C -0.433 4.433 20 H 0.085 0.915 21 C 0.070 3.930 22 N -0.720 5.720 23 Si 0.908 3.092 24 H -0.269 1.269 25 H -0.276 1.276 26 H -0.262 1.262 27 N -0.504 5.504 28 N -0.416 5.416 29 H 0.056 0.944 30 H 0.068 0.932 31 H 0.115 0.885 32 H 0.090 0.910 33 H 0.076 0.924 34 H 0.083 0.917 35 H 0.071 0.929 36 H 0.091 0.909 37 H 0.097 0.903 38 H 0.182 0.818 39 H 0.410 0.590 40 H 0.137 0.863 41 H 0.099 0.901 42 H 0.100 0.900 43 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.793 -4.359 15.548 17.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.033 3.967 3 H 0.114 0.886 4 C -0.170 4.170 5 C -0.166 4.166 6 C -0.072 4.072 7 C -0.041 4.041 8 N -0.211 5.211 9 C -0.119 4.119 10 C -0.188 4.188 11 C 0.379 3.621 12 O -0.397 6.397 13 N -0.271 5.271 14 C 0.121 3.879 15 C -0.339 4.339 16 C -0.076 4.076 17 C -0.309 4.309 18 C 0.152 3.848 19 C -0.465 4.465 20 H 0.104 0.896 21 C -0.154 4.154 22 N -0.342 5.342 23 Si 0.732 3.268 24 H -0.195 1.195 25 H -0.202 1.202 26 H -0.186 1.186 27 N -0.223 5.223 28 N -0.098 5.098 29 H 0.075 0.925 30 H 0.087 0.913 31 H 0.133 0.867 32 H 0.109 0.891 33 H 0.094 0.906 34 H 0.102 0.898 35 H 0.090 0.910 36 H 0.110 0.890 37 H 0.116 0.884 38 H 0.199 0.801 39 H 0.246 0.754 40 H 0.154 0.846 41 H 0.117 0.883 42 H 0.118 0.882 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 8.654 -4.893 15.309 18.253 hybrid contribution -1.027 0.705 -0.495 1.340 sum 7.627 -4.188 14.813 17.180 Atomic orbital electron populations 1.22692 0.92197 1.05629 1.03818 1.21656 0.96808 0.96363 0.81897 0.88621 1.22072 0.96217 1.01871 0.96820 1.21735 0.95955 0.99803 0.99098 1.20251 0.99413 0.99576 0.87985 1.23421 0.91701 0.93160 0.95788 1.69923 1.25151 1.26299 0.99681 1.22796 0.93858 0.95381 0.99911 1.20557 1.04343 1.08317 0.85627 1.16576 0.80498 0.83741 0.81328 1.90500 1.64561 1.29686 1.54944 1.42768 1.36951 1.26136 1.21215 1.18414 0.88299 0.90145 0.90993 1.21785 1.05069 1.06027 1.01000 1.20826 0.95474 0.96442 0.94817 1.21743 1.07627 1.07159 0.94338 1.18170 0.86706 0.86699 0.93255 1.19572 1.18057 1.17924 0.90977 0.89648 1.26042 0.94077 0.94507 1.00812 1.70098 1.14467 1.13438 1.36198 0.86329 0.80020 0.78301 0.82159 1.19458 1.20152 1.18582 1.68038 1.19538 1.26776 1.07914 1.45316 1.25295 1.32168 1.07003 0.92485 0.91307 0.86688 0.89140 0.90565 0.89823 0.91007 0.89042 0.88448 0.80124 0.75386 0.84612 0.88327 0.88201 0.91699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.31 8.21 37.16 0.31 -2.00 16 2 C 0.13 1.53 3.27 -67.82 -0.22 1.31 16 3 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 4 C -0.13 -1.00 5.15 -26.48 -0.14 -1.13 16 5 C -0.13 -0.84 5.95 -26.42 -0.16 -1.00 16 6 C -0.03 -0.28 6.34 -27.49 -0.17 -0.46 16 7 C 0.22 2.91 7.64 -155.31 -1.19 1.72 16 8 N -0.49 -7.56 11.20 -10.34 -0.12 -7.67 16 9 C 0.03 0.54 11.38 -17.35 -0.20 0.34 16 10 C -0.07 -1.16 6.59 -82.36 -0.54 -1.70 16 11 C 0.59 11.07 7.09 -12.84 -0.09 10.98 16 12 O -0.52 -10.38 9.55 5.21 0.05 -10.33 16 13 N -0.63 -12.75 5.37 -12.58 -0.07 -12.82 16 14 C 0.36 8.69 7.50 -155.07 -1.16 7.52 16 15 C -0.31 -7.46 8.90 -38.89 -0.35 -7.80 16 16 C -0.05 -1.18 10.15 -39.39 -0.40 -1.58 16 17 C -0.29 -7.08 9.83 -38.66 -0.38 -7.46 16 18 C 0.28 7.57 6.55 -85.00 -0.56 7.02 16 19 C -0.43 -11.45 9.14 -37.73 -0.34 -11.80 16 20 H 0.09 2.11 7.85 -52.49 -0.41 1.70 16 21 C 0.07 1.76 5.50 -17.34 -0.10 1.67 16 22 N -0.72 -18.57 11.46 55.55 0.64 -17.93 16 23 Si 0.91 18.37 29.56 -169.99 -5.02 13.34 16 24 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 25 H -0.28 -5.48 7.11 56.52 0.40 -5.08 16 26 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 27 N -0.50 -13.61 7.89 -10.28 -0.08 -13.69 16 28 N -0.42 -5.78 2.98 -102.73 -0.31 -6.09 16 29 H 0.06 0.77 8.08 -51.93 -0.42 0.35 16 30 H 0.07 0.67 7.95 -51.93 -0.41 0.25 16 31 H 0.12 1.78 4.73 -52.08 -0.25 1.54 16 32 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.08 0.58 8.10 -51.92 -0.42 0.16 16 34 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.07 0.51 8.12 -51.93 -0.42 0.09 16 36 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.18 2.50 7.84 -52.48 -0.41 2.09 16 39 H 0.41 7.64 8.18 -40.82 -0.33 7.30 16 40 H 0.14 3.10 5.17 -52.69 -0.27 2.83 16 41 H 0.10 1.96 8.06 -52.49 -0.42 1.54 16 42 H 0.10 2.27 8.06 -52.48 -0.42 1.85 16 43 H 0.27 6.35 8.29 -40.82 -0.34 6.02 16 LS Contribution 349.63 15.07 5.27 5.27 Total: -1.00 -31.44 349.63 -10.77 -42.21 By element: Atomic # 1 Polarization: 17.51 SS G_CDS: -5.44 Total: 12.06 kcal Atomic # 6 Polarization: 1.32 SS G_CDS: -5.69 Total: -4.37 kcal Atomic # 7 Polarization: -58.26 SS G_CDS: 0.07 Total: -58.20 kcal Atomic # 8 Polarization: -10.38 SS G_CDS: 0.05 Total: -10.33 kcal Atomic # 14 Polarization: 18.37 SS G_CDS: -5.02 Total: 13.34 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.44 -10.77 -42.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882471244.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.017 kcal (2) G-P(sol) polarization free energy of solvation -31.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.215 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds