Wall clock time and date at job start Tue Mar 31 2020 14:33:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.58261 * 2 1 4 4 C 1.53268 * 109.57988 * 120.26411 * 2 1 3 5 5 C 1.53222 * 109.41503 * 169.87417 * 4 2 1 6 6 C 1.53373 * 109.34133 * 290.85098 * 5 4 2 7 7 C 1.51110 * 108.24119 * 48.83850 * 6 5 4 8 8 N 1.30564 * 127.08804 * 163.89422 * 7 6 5 9 9 C 1.33447 * 109.68824 * 180.02562 * 8 7 6 10 10 C 1.36863 * 107.83238 * 359.97438 * 9 8 7 11 11 C 1.46713 * 126.91509 * 180.02562 * 10 9 8 12 12 O 1.21681 * 120.00172 * 200.08350 * 11 10 9 13 13 N 1.34780 * 119.99819 * 20.08675 * 11 10 9 14 14 C 1.39150 * 119.99695 * 184.67419 * 13 11 10 15 15 C 1.39704 * 119.57743 * 338.46418 * 14 13 11 16 16 C 1.38641 * 119.49455 * 179.70888 * 15 14 13 17 17 C 1.38363 * 118.66822 * 0.55629 * 16 15 14 18 18 C 1.40575 * 119.13569 * 359.73022 * 17 16 15 19 19 C 1.41331 * 119.78343 * 180.02562 * 18 17 16 20 20 H 1.07994 * 120.00285 * 359.97262 * 19 18 17 21 21 C 1.40032 * 119.99759 * 179.97438 * 19 18 17 22 22 N 1.30745 * 120.00175 * 359.97438 * 21 19 18 23 23 Si 1.86794 * 119.99963 * 179.97438 * 21 19 18 24 24 H 1.48507 * 109.47249 * 89.99773 * 23 21 19 25 25 H 1.48506 * 109.47439 * 209.99775 * 23 21 19 26 26 H 1.48501 * 109.47389 * 329.99649 * 23 21 19 27 27 N 1.31924 * 119.57738 * 158.73776 * 14 13 11 28 28 N 1.34884 * 123.92034 * 343.94329 * 7 6 5 29 29 H 1.08996 * 109.47583 * 156.81636 * 1 2 3 30 30 H 1.09001 * 109.46954 * 276.81931 * 1 2 3 31 31 H 1.09007 * 109.47097 * 36.81496 * 1 2 3 32 32 H 1.08997 * 109.47656 * 289.99981 * 4 2 1 33 33 H 1.09008 * 109.47075 * 50.01344 * 4 2 1 34 34 H 1.09004 * 109.48186 * 170.86991 * 5 4 2 35 35 H 1.09003 * 109.42149 * 50.79588 * 5 4 2 36 36 H 1.09001 * 109.70988 * 289.14564 * 6 5 4 37 37 H 1.09005 * 109.70912 * 168.52329 * 6 5 4 38 38 H 1.08003 * 126.08451 * 180.02562 * 9 8 7 39 39 H 0.97000 * 120.00263 * 4.67030 * 13 11 10 40 40 H 1.07996 * 120.25652 * 0.02562 * 15 14 13 41 41 H 1.07997 * 120.66648 * 180.26338 * 16 15 14 42 42 H 1.08009 * 120.42894 * 179.75238 * 17 16 15 43 43 H 0.96990 * 119.99816 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0436 -0.7278 1.2472 5 6 3.5546 -0.9488 1.1219 6 6 3.8275 -1.9790 0.0189 7 6 3.0393 -1.5795 -1.2069 8 7 3.2117 -2.0082 -2.4280 9 6 2.3245 -1.4272 -3.2380 10 6 1.5527 -0.5878 -2.4810 11 6 0.4490 0.2573 -2.9500 12 8 0.0856 1.2086 -2.2840 13 7 -0.1624 -0.0200 -4.1187 14 6 -1.1427 0.8359 -4.6113 15 6 -1.8083 1.6981 -3.7365 16 6 -2.7805 2.5545 -4.2301 17 6 -3.0711 2.5197 -5.5824 18 6 -2.3706 1.6252 -6.4102 19 6 -2.6561 1.5786 -7.7936 20 1 -3.4106 2.2285 -8.2115 21 6 -1.9606 0.6897 -8.6224 22 7 -1.0469 -0.0969 -8.1167 23 14 -2.3384 0.6276 -10.4507 24 1 -1.4659 1.5906 -11.1695 25 1 -2.0879 -0.7441 -10.9617 26 1 -3.7618 0.9868 -10.6746 27 7 -1.4355 0.8190 -5.8975 28 7 2.0207 -0.6955 -1.1917 29 1 -0.3634 -0.9446 -0.4045 30 1 -0.3633 0.1220 1.0204 31 1 -0.3634 0.8228 -0.6158 32 1 1.8342 -0.1257 2.1314 33 1 1.5431 -1.6920 1.3372 34 1 3.9480 -1.3170 2.0695 35 1 4.0389 -0.0060 0.8676 36 1 3.5121 -2.9674 0.3529 37 1 4.8918 -1.9922 -0.2166 38 1 2.2313 -1.5908 -4.3015 39 1 0.0809 -0.8163 -4.6164 40 1 -1.5639 1.7012 -2.6845 41 1 -3.3038 3.2318 -3.5715 42 1 -3.8261 3.1716 -5.9966 43 1 -0.5649 -0.7123 -8.6909 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882471244.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:43 Heat of formation + Delta-G solvation = 53.991648 kcal Electronic energy + Delta-G solvation = -27444.968377 eV Core-core repulsion = 23683.653567 eV Total energy + Delta-G solvation = -3761.314810 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.63530 -41.30293 -39.46239 -38.09897 -36.12672 -35.15531 -34.65147 -32.36384 -31.80909 -31.66063 -30.07607 -28.10928 -27.35326 -24.98046 -23.96384 -23.53035 -23.02546 -22.92110 -21.21566 -20.09298 -19.40118 -19.16178 -17.90395 -17.47286 -16.77156 -16.64387 -16.53248 -16.29654 -15.92676 -15.64448 -15.44470 -15.25240 -15.06286 -14.62076 -14.35335 -14.27933 -13.94788 -13.82901 -13.36092 -13.27259 -12.95025 -12.85035 -12.68633 -12.63137 -12.56479 -12.05442 -12.02288 -11.86064 -11.79565 -11.44614 -11.30039 -11.00829 -10.75784 -10.58330 -9.98657 -9.68109 -9.56661 -9.03665 -8.31127 -6.51942 0.08019 0.85691 1.10631 1.34604 1.42781 1.53920 1.57016 1.72516 2.11923 2.17636 2.24059 2.86634 3.19302 3.45048 3.49715 3.64835 3.73748 3.90794 4.02982 4.14299 4.27235 4.28875 4.32425 4.43773 4.55912 4.59692 4.71740 4.83818 4.85414 4.88344 4.90261 4.93985 4.95513 5.05187 5.14822 5.22725 5.28045 5.35224 5.40979 5.60043 5.65596 5.92020 6.03327 6.05816 6.23667 6.41929 6.75414 6.79671 6.91418 7.09041 8.07344 8.44356 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.020879 B = 0.003155 C = 0.002772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.761900 B = 8871.846692 C =10097.800253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.126 3.874 3 H 0.090 0.910 4 C -0.125 4.125 5 C -0.121 4.121 6 C -0.036 4.036 7 C 0.233 3.767 8 N -0.519 5.519 9 C 0.036 3.964 10 C -0.098 4.098 11 C 0.594 3.406 12 O -0.532 6.532 13 N -0.629 5.629 14 C 0.346 3.654 15 C -0.324 4.324 16 C -0.048 4.048 17 C -0.304 4.304 18 C 0.244 3.756 19 C -0.464 4.464 20 H 0.092 0.908 21 C 0.025 3.975 22 N -0.752 5.752 23 Si 0.988 3.012 24 H -0.265 1.265 25 H -0.268 1.268 26 H -0.256 1.256 27 N -0.532 5.532 28 N -0.418 5.418 29 H 0.039 0.961 30 H 0.098 0.902 31 H 0.081 0.919 32 H 0.117 0.883 33 H 0.079 0.921 34 H 0.119 0.881 35 H 0.067 0.933 36 H 0.111 0.889 37 H 0.111 0.889 38 H 0.188 0.812 39 H 0.415 0.585 40 H 0.144 0.856 41 H 0.133 0.867 42 H 0.114 0.886 43 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.815 -4.972 17.257 20.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.025 3.975 3 H 0.108 0.892 4 C -0.162 4.162 5 C -0.159 4.159 6 C -0.074 4.074 7 C -0.029 4.029 8 N -0.238 5.238 9 C -0.118 4.118 10 C -0.215 4.215 11 C 0.384 3.616 12 O -0.412 6.412 13 N -0.273 5.273 14 C 0.112 3.888 15 C -0.349 4.349 16 C -0.073 4.073 17 C -0.327 4.327 18 C 0.118 3.882 19 C -0.496 4.496 20 H 0.110 0.890 21 C -0.197 4.197 22 N -0.374 5.374 23 Si 0.808 3.192 24 H -0.190 1.190 25 H -0.192 1.192 26 H -0.179 1.179 27 N -0.252 5.252 28 N -0.099 5.099 29 H 0.058 0.942 30 H 0.117 0.883 31 H 0.100 0.900 32 H 0.135 0.865 33 H 0.098 0.902 34 H 0.137 0.863 35 H 0.086 0.914 36 H 0.129 0.871 37 H 0.129 0.871 38 H 0.205 0.795 39 H 0.252 0.748 40 H 0.162 0.838 41 H 0.151 0.849 42 H 0.132 0.868 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 9.682 -5.500 17.064 20.376 hybrid contribution -1.276 0.877 -0.876 1.779 sum 8.406 -4.623 16.188 18.817 Atomic orbital electron populations 1.22556 0.93247 1.03083 1.04736 1.21937 0.96054 0.96740 0.82742 0.89202 1.22109 0.96864 1.01941 0.95284 1.21758 0.95101 0.99157 0.99884 1.20603 0.99392 1.01074 0.86359 1.24474 0.90657 0.91194 0.96584 1.69971 1.25689 1.27327 1.00770 1.23007 0.93571 0.94792 1.00464 1.20197 1.04550 1.09424 0.87327 1.16859 0.80570 0.83818 0.80397 1.90495 1.65187 1.30413 1.55070 1.42745 1.36720 1.25933 1.21885 1.18757 0.88834 0.90614 0.90644 1.22047 1.05269 1.06208 1.01373 1.21205 0.94967 0.96337 0.94778 1.21931 1.08273 1.07508 0.94998 1.18686 0.87514 0.87637 0.94382 1.19952 1.19095 1.19129 0.91422 0.88954 1.26961 0.93485 0.93580 1.05641 1.70184 1.15111 1.13853 1.38257 0.85125 0.79940 0.78565 0.75561 1.18990 1.19250 1.17924 1.68048 1.20348 1.27683 1.09074 1.45550 1.25325 1.32337 1.06719 0.94206 0.88346 0.90028 0.86457 0.90196 0.86301 0.91421 0.87094 0.87113 0.79528 0.74835 0.83848 0.84932 0.86771 0.90986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.36 8.21 71.98 0.59 -3.76 16 2 C 0.13 2.71 3.27 45.09 0.15 2.85 16 3 H 0.09 2.02 8.14 -2.39 -0.02 2.01 16 4 C -0.12 -1.44 5.15 30.76 0.16 -1.28 16 5 C -0.12 -1.10 5.95 30.79 0.18 -0.91 16 6 C -0.04 -0.48 6.34 30.10 0.19 -0.29 16 7 C 0.23 5.78 7.64 138.29 1.06 6.84 16 8 N -0.52 -15.63 11.20 -186.64 -2.09 -17.72 16 9 C 0.04 1.15 11.38 84.12 0.96 2.11 16 10 C -0.10 -3.26 6.59 40.13 0.26 -2.99 16 11 C 0.59 23.14 7.09 86.46 0.61 23.75 16 12 O -0.53 -22.05 9.55 -4.29 -0.04 -22.09 16 13 N -0.63 -26.79 5.37 -311.94 -1.68 -28.47 16 14 C 0.35 17.58 7.50 133.29 1.00 18.58 16 15 C -0.32 -15.77 8.90 22.72 0.20 -15.57 16 16 C -0.05 -2.26 10.15 22.40 0.23 -2.03 16 17 C -0.30 -15.40 9.83 22.87 0.22 -15.17 16 18 C 0.24 13.76 6.55 40.19 0.26 14.02 16 19 C -0.46 -25.18 9.14 23.47 0.21 -24.97 16 20 H 0.09 4.66 7.85 -2.91 -0.02 4.64 16 21 C 0.03 1.28 5.50 85.29 0.47 1.75 16 22 N -0.75 -39.77 11.46 21.84 0.25 -39.52 16 23 Si 0.99 37.88 29.56 68.60 2.03 39.90 16 24 H -0.27 -9.91 7.11 99.48 0.71 -9.20 16 25 H -0.27 -9.80 7.11 99.48 0.71 -9.10 16 26 H -0.26 -9.45 7.11 99.48 0.71 -8.74 16 27 N -0.53 -29.90 7.89 -186.42 -1.47 -31.37 16 28 N -0.42 -11.36 2.98 -478.93 -1.42 -12.78 16 29 H 0.04 1.08 8.08 -2.39 -0.02 1.06 16 30 H 0.10 1.73 7.95 -2.39 -0.02 1.71 16 31 H 0.08 2.59 4.73 -7.77 -0.04 2.55 16 32 H 0.12 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.08 0.92 8.10 -2.38 -0.02 0.90 16 34 H 0.12 0.36 8.14 -2.38 -0.02 0.34 16 35 H 0.07 0.71 8.12 -2.39 -0.02 0.70 16 36 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.11 1.27 8.14 -2.38 -0.02 1.25 16 38 H 0.19 5.40 7.84 -2.91 -0.02 5.38 16 39 H 0.41 16.40 8.18 -92.71 -0.76 15.64 16 40 H 0.14 6.70 5.17 -9.02 -0.05 6.66 16 41 H 0.13 5.13 8.06 -2.91 -0.02 5.11 16 42 H 0.11 5.26 8.06 -2.91 -0.02 5.23 16 43 H 0.28 13.31 8.29 -92.72 -0.77 12.54 16 Total: -1.00 -71.15 349.63 2.58 -68.56 By element: Atomic # 1 Polarization: 40.33 SS G_CDS: 0.24 Total: 40.57 kcal Atomic # 6 Polarization: -3.84 SS G_CDS: 6.76 Total: 2.92 kcal Atomic # 7 Polarization: -123.45 SS G_CDS: -6.41 Total: -129.86 kcal Atomic # 8 Polarization: -22.05 SS G_CDS: -0.04 Total: -22.09 kcal Atomic # 14 Polarization: 37.88 SS G_CDS: 2.03 Total: 39.90 kcal Total: -71.15 2.58 -68.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882471244.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.556 kcal (2) G-P(sol) polarization free energy of solvation -71.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.564 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds