Wall clock time and date at job start Tue Mar 31 2020 14:32:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.42833 * 2 1 4 4 C 1.53387 * 109.42887 * 119.89640 * 2 1 3 5 5 C 1.50883 * 108.19066 * 170.62057 * 4 2 1 6 6 C 1.34575 * 128.32876 * 163.25570 * 5 4 2 7 7 N 1.35187 * 107.62235 * 180.28035 * 6 5 4 8 8 H 0.97002 * 126.00689 * 179.97438 * 7 6 5 9 9 N 1.40322 * 107.99573 * 359.96127 * 7 6 5 10 10 C 1.30135 * 108.11763 * 359.96024 * 9 7 6 11 11 C 1.50948 * 128.28258 * 180.13065 * 10 9 7 12 12 H 1.08994 * 109.71490 * 283.07316 * 11 10 9 13 13 C 1.50702 * 109.71636 * 43.67577 * 11 10 9 14 14 O 1.21274 * 120.00049 * 119.39523 * 13 11 10 15 15 N 1.34781 * 119.99922 * 299.39581 * 13 11 10 16 16 C 1.39263 * 120.00133 * 183.49772 * 15 13 11 17 17 C 1.39676 * 119.57268 * 339.07435 * 16 15 13 18 18 C 1.38653 * 119.49583 * 180.02562 * 17 16 15 19 19 C 1.38349 * 118.66956 * 359.74703 * 18 17 16 20 20 C 1.40579 * 119.12643 * 0.52025 * 19 18 17 21 21 C 1.41339 * 119.78576 * 179.74997 * 20 19 18 22 22 H 1.07996 * 120.00402 * 8.90247 * 21 20 19 23 23 C 1.40031 * 119.99905 * 188.90202 * 21 20 19 24 24 N 1.30747 * 120.00031 * 195.00381 * 23 21 20 25 25 Si 1.86806 * 119.99896 * 15.00975 * 23 21 20 26 26 H 1.48503 * 109.46926 * 269.99853 * 25 23 21 27 27 H 1.48500 * 109.47039 * 29.99733 * 25 23 21 28 28 H 1.48503 * 109.47056 * 149.99864 * 25 23 21 29 29 N 1.31902 * 119.57536 * 159.10090 * 16 15 13 30 30 C 1.53041 * 109.41953 * 240.19743 * 2 1 3 31 31 H 1.08991 * 109.47542 * 300.10167 * 1 2 3 32 32 H 1.09004 * 109.47153 * 60.10398 * 1 2 3 33 33 H 1.09002 * 109.47381 * 180.09973 * 1 2 3 34 34 H 1.08995 * 109.71896 * 50.94696 * 4 2 1 35 35 H 1.08994 * 109.71893 * 290.28739 * 4 2 1 36 36 H 1.07996 * 126.18359 * 0.31737 * 6 5 4 37 37 H 0.97004 * 119.99602 * 3.48991 * 15 13 11 38 38 H 1.08001 * 120.25237 * 359.97438 * 17 16 15 39 39 H 1.08002 * 120.66787 * 179.97438 * 18 17 16 40 40 H 1.07998 * 120.43827 * 180.24195 * 19 18 17 41 41 H 0.96993 * 120.00070 * 354.93385 * 24 23 21 42 42 H 1.08997 * 109.47064 * 48.13592 * 30 2 1 43 43 H 1.09004 * 109.39518 * 288.29908 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8925 1.0280 0.0000 4 6 2.0402 -0.7210 1.2540 5 6 3.5306 -0.9104 1.1149 6 6 4.4276 -1.2053 2.0738 7 7 5.6447 -1.2719 1.4892 8 1 6.4825 -1.4678 1.9371 9 7 5.4832 -1.0081 0.1205 10 6 4.2195 -0.7934 -0.1039 11 6 3.5440 -0.4713 -1.4149 12 1 3.7202 0.5730 -1.6725 13 6 4.0905 -1.3620 -2.5007 14 8 3.3499 -2.1139 -3.0982 15 7 5.4022 -1.3230 -2.8078 16 6 5.8944 -2.0920 -3.8594 17 6 5.1683 -3.2001 -4.3018 18 6 5.6601 -3.9649 -5.3485 19 6 6.8613 -3.6002 -5.9299 20 6 7.5476 -2.4772 -5.4356 21 6 8.7786 -2.0953 -6.0156 22 1 9.1193 -2.5724 -6.9226 23 6 9.5564 -1.0982 -5.4143 24 7 10.5306 -0.5373 -6.0821 25 14 9.2024 -0.5696 -3.6579 26 1 8.2227 0.5464 -3.6648 27 1 8.6411 -1.7163 -2.8995 28 1 10.4619 -0.1187 -3.0133 29 7 7.0404 -1.7647 -4.4245 30 6 2.0388 -0.7174 -1.2525 31 1 -0.3634 0.5154 0.8890 32 1 -0.3634 0.5122 -0.8909 33 1 -0.3634 -1.0277 0.0018 34 1 1.5529 -1.6918 1.3440 35 1 1.8270 -0.1185 2.1370 36 1 4.2136 -1.3613 3.1208 37 1 6.0035 -0.7592 -2.2964 38 1 4.2314 -3.4598 -3.8315 39 1 5.1145 -4.8260 -5.7054 40 1 7.2688 -4.1733 -6.7496 41 1 10.7621 -0.8616 -6.9664 42 1 1.5128 -0.3369 -2.1280 43 1 1.8547 -1.7875 -1.1567 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882472884.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:32:45 Heat of formation + Delta-G solvation = 54.480940 kcal Electronic energy + Delta-G solvation = -27552.816237 eV Core-core repulsion = 23791.522644 eV Total energy + Delta-G solvation = -3761.293593 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.79009 -40.01227 -38.24278 -37.04756 -34.48275 -33.55259 -32.84271 -31.13096 -31.00465 -30.04401 -29.26654 -26.34143 -25.45146 -24.72533 -22.45411 -21.66139 -21.31554 -20.87599 -19.82014 -18.98294 -18.28250 -17.78693 -17.17287 -16.40745 -15.86067 -15.04589 -14.94402 -14.80546 -14.54739 -14.18098 -14.08847 -13.73380 -13.67012 -13.27230 -13.03315 -12.76802 -12.58807 -12.47229 -12.21152 -12.18775 -11.83665 -11.70510 -11.39111 -11.11684 -10.89157 -10.85804 -10.77643 -10.51011 -10.14950 -9.90528 -9.73609 -9.68083 -9.09107 -8.95867 -8.59168 -8.46511 -7.79309 -7.41672 -7.16038 -4.70378 1.72669 2.22057 2.52850 2.65679 2.73607 3.14285 3.39318 3.54176 3.66395 3.94904 4.20404 4.39180 4.40529 4.64088 4.65770 4.66730 4.86219 4.95138 5.15877 5.21821 5.30969 5.42266 5.46675 5.52972 5.58688 5.66128 5.72355 5.82692 5.91096 5.95623 6.03370 6.08239 6.19923 6.29966 6.41102 6.54915 6.58968 6.65799 7.12464 7.22077 7.28409 7.47764 7.49230 7.64248 7.72428 7.86213 8.18542 8.36769 8.53697 8.72257 9.51405 10.03163 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.016096 B = 0.003902 C = 0.003424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1739.168361 B = 7173.397243 C = 8176.627078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.090 4.090 3 H 0.074 0.926 4 C -0.035 4.035 5 C -0.229 4.229 6 C 0.061 3.939 7 N -0.477 5.477 8 H 0.441 0.559 9 N -0.276 5.276 10 C 0.083 3.917 11 C -0.024 4.024 12 H 0.118 0.882 13 C 0.526 3.474 14 O -0.512 6.512 15 N -0.643 5.643 16 C 0.383 3.617 17 C -0.312 4.312 18 C -0.038 4.038 19 C -0.278 4.278 20 C 0.274 3.726 21 C -0.483 4.483 22 H 0.083 0.917 23 C 0.050 3.950 24 N -0.807 5.807 25 Si 1.142 2.858 26 H -0.287 1.287 27 H -0.279 1.279 28 H -0.328 1.328 29 N -0.593 5.593 30 C -0.091 4.091 31 H 0.055 0.945 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.177 0.823 37 H 0.411 0.589 38 H 0.144 0.856 39 H 0.105 0.895 40 H 0.104 0.896 41 H 0.284 0.716 42 H 0.080 0.920 43 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.311 2.179 18.049 23.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.109 4.109 3 H 0.092 0.908 4 C -0.073 4.073 5 C -0.240 4.240 6 C -0.085 4.085 7 N -0.186 5.186 8 H 0.286 0.714 9 N -0.098 5.098 10 C -0.086 4.086 11 C -0.048 4.048 12 H 0.135 0.865 13 C 0.311 3.689 14 O -0.387 6.387 15 N -0.288 5.288 16 C 0.152 3.848 17 C -0.337 4.337 18 C -0.063 4.063 19 C -0.301 4.301 20 C 0.150 3.850 21 C -0.515 4.515 22 H 0.101 0.899 23 C -0.172 4.172 24 N -0.429 5.429 25 Si 0.975 3.025 26 H -0.214 1.214 27 H -0.206 1.206 28 H -0.261 1.261 29 N -0.318 5.318 30 C -0.130 4.130 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.194 0.806 37 H 0.248 0.752 38 H 0.161 0.839 39 H 0.123 0.877 40 H 0.122 0.878 41 H 0.095 0.905 42 H 0.099 0.901 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -13.739 3.351 18.444 23.242 hybrid contribution -0.589 -1.611 -0.869 1.922 sum -14.328 1.741 17.575 22.743 Atomic orbital electron populations 1.21811 0.94601 1.02107 1.01793 1.21181 0.95702 0.99795 0.94206 0.90785 1.20066 0.89108 1.00424 0.97731 1.20038 0.97330 1.14710 0.91934 1.22047 0.85371 1.01787 0.99309 1.46312 1.08785 1.57499 1.05959 0.71431 1.77078 1.17862 1.21741 0.93106 1.21835 0.90976 1.00356 0.95433 1.19967 0.96266 1.00783 0.87747 0.86450 1.20193 0.81616 0.83400 0.83697 1.90583 1.57913 1.38258 1.51923 1.43255 1.09076 1.44737 1.31697 1.18139 0.90823 0.88434 0.87409 1.21739 1.05812 0.99870 1.06270 1.20938 0.94307 0.96764 0.94248 1.21614 0.99192 1.02621 1.06640 1.18199 0.92754 0.87639 0.86399 1.20646 1.01936 1.19109 1.09796 0.89866 1.27639 0.91356 0.91053 1.07138 1.70614 1.25567 1.33209 1.13485 0.82155 0.71816 0.77029 0.71509 1.21425 1.20644 1.26092 1.66186 1.14413 1.34532 1.16638 1.21490 0.90683 1.02621 0.98155 0.92617 0.92375 0.92426 0.91057 0.91159 0.80597 0.75213 0.83881 0.87728 0.87785 0.90523 0.90089 0.90163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.15 37.16 0.34 -0.64 16 2 C -0.09 -0.74 2.66 -90.40 -0.24 -0.98 16 3 H 0.07 0.59 8.10 -51.93 -0.42 0.17 16 4 C -0.04 -0.28 5.58 -27.59 -0.15 -0.43 16 5 C -0.23 -2.38 5.89 -104.98 -0.62 -2.99 16 6 C 0.06 0.52 11.95 -17.37 -0.21 0.31 16 7 N -0.48 -4.95 7.37 30.35 0.22 -4.73 16 8 H 0.44 3.27 8.96 -182.43 -1.64 1.63 16 9 N -0.28 -4.00 11.43 33.75 0.39 -3.62 16 10 C 0.08 1.10 6.38 -82.34 -0.53 0.58 16 11 C -0.02 -0.32 2.91 -92.61 -0.27 -0.59 16 12 H 0.12 1.35 8.14 -51.93 -0.42 0.93 16 13 C 0.53 9.48 7.03 -10.98 -0.08 9.41 16 14 O -0.51 -10.33 12.52 5.56 0.07 -10.26 16 15 N -0.64 -13.27 5.15 -11.40 -0.06 -13.33 16 16 C 0.38 9.38 7.51 -154.98 -1.16 8.22 16 17 C -0.31 -7.44 8.89 -38.89 -0.35 -7.79 16 18 C -0.04 -0.88 10.15 -39.39 -0.40 -1.28 16 19 C -0.28 -6.93 9.83 -38.66 -0.38 -7.31 16 20 C 0.27 7.51 6.27 -85.00 -0.53 6.98 16 21 C -0.48 -13.57 9.52 -37.73 -0.36 -13.92 16 22 H 0.08 2.32 8.06 -52.49 -0.42 1.90 16 23 C 0.05 1.39 5.52 -17.34 -0.10 1.29 16 24 N -0.81 -22.45 13.65 55.55 0.76 -21.69 16 25 Si 1.14 28.70 25.95 -169.99 -4.41 24.29 16 26 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 27 H -0.28 -7.11 6.49 56.52 0.37 -6.74 16 28 H -0.33 -8.04 7.11 56.52 0.40 -7.64 16 29 N -0.59 -15.83 5.00 -10.25 -0.05 -15.88 16 30 C -0.09 -1.00 3.92 -26.51 -0.10 -1.10 16 31 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.07 0.55 8.13 -51.93 -0.42 0.12 16 35 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.18 0.78 8.06 -52.49 -0.42 0.36 16 37 H 0.41 8.12 7.82 -40.82 -0.32 7.80 16 38 H 0.14 3.33 5.18 -52.88 -0.27 3.06 16 39 H 0.10 2.05 8.06 -52.49 -0.42 1.63 16 40 H 0.10 2.41 8.06 -52.49 -0.42 1.98 16 41 H 0.28 7.54 8.73 -40.82 -0.36 7.19 16 42 H 0.08 0.86 8.09 -51.93 -0.42 0.44 16 43 H 0.08 0.99 7.76 -51.93 -0.40 0.59 16 LS Contribution 350.63 15.07 5.28 5.28 Total: -1.00 -33.83 350.63 -9.82 -43.65 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: -6.89 Total: 6.53 kcal Atomic # 6 Polarization: -5.12 SS G_CDS: -5.13 Total: -10.25 kcal Atomic # 7 Polarization: -60.51 SS G_CDS: 1.26 Total: -59.25 kcal Atomic # 8 Polarization: -10.33 SS G_CDS: 0.07 Total: -10.26 kcal Atomic # 14 Polarization: 28.70 SS G_CDS: -4.41 Total: 24.29 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -33.83 -9.82 -43.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882472884.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.133 kcal (2) G-P(sol) polarization free energy of solvation -33.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.652 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds