Wall clock time and date at job start Tue Mar 31 2020 14:32:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.38671 * 2 1 4 4 C 1.53393 * 109.42670 * 240.13317 * 2 1 3 5 5 C 1.50888 * 108.19296 * 189.37342 * 4 2 1 6 6 C 1.34567 * 128.32322 * 196.66416 * 5 4 2 7 7 N 1.35456 * 107.59432 * 179.97438 * 6 5 4 8 8 H 0.97003 * 126.02937 * 180.02562 * 7 6 5 9 9 N 1.40314 * 107.97602 * 359.97438 * 7 6 5 10 10 C 1.30132 * 108.11924 * 0.06880 * 9 7 6 11 11 C 1.50945 * 128.28739 * 179.85476 * 10 9 7 12 12 H 1.09006 * 109.71895 * 316.49439 * 11 10 9 13 13 C 1.50703 * 109.71545 * 77.09859 * 11 10 9 14 14 O 1.21268 * 119.99717 * 119.40016 * 13 11 10 15 15 N 1.34777 * 120.00013 * 299.39397 * 13 11 10 16 16 C 1.39265 * 120.00150 * 183.70564 * 15 13 11 17 17 C 1.39674 * 119.57009 * 339.10194 * 16 15 13 18 18 C 1.38655 * 119.49264 * 180.02562 * 17 16 15 19 19 C 1.38340 * 118.67144 * 0.02562 * 18 17 16 20 20 C 1.40580 * 119.12906 * 359.97438 * 19 18 17 21 21 C 1.41343 * 119.78910 * 179.97438 * 20 19 18 22 22 H 1.08001 * 119.99496 * 5.13772 * 21 20 19 23 23 C 1.40024 * 120.00236 * 185.12776 * 21 20 19 24 24 N 1.30745 * 119.99984 * 184.82511 * 23 21 20 25 25 Si 1.86801 * 119.99866 * 4.82653 * 23 21 20 26 26 H 1.48502 * 109.46965 * 179.97438 * 25 23 21 27 27 H 1.48507 * 109.47101 * 59.99551 * 25 23 21 28 28 H 1.48499 * 109.47125 * 299.99818 * 25 23 21 29 29 N 1.31898 * 119.57577 * 159.40057 * 16 15 13 30 30 C 1.53026 * 109.43384 * 119.87055 * 2 1 3 31 31 H 1.09000 * 109.46912 * 300.12532 * 1 2 3 32 32 H 1.08994 * 109.47433 * 60.13157 * 1 2 3 33 33 H 1.08998 * 109.47299 * 180.12893 * 1 2 3 34 34 H 1.08989 * 109.71482 * 309.04933 * 4 2 1 35 35 H 1.09001 * 109.71623 * 69.66013 * 4 2 1 36 36 H 1.07993 * 126.19679 * 359.83756 * 6 5 4 37 37 H 0.97006 * 119.99813 * 3.70649 * 15 13 11 38 38 H 1.07994 * 120.25615 * 0.04459 * 17 16 15 39 39 H 1.08000 * 120.66243 * 179.97438 * 18 17 16 40 40 H 1.08006 * 120.43745 * 179.97438 * 19 18 17 41 41 H 0.96994 * 119.99689 * 354.99182 * 24 23 21 42 42 H 1.09000 * 109.42184 * 71.69231 * 30 2 1 43 43 H 1.08997 * 109.41883 * 311.87469 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8918 1.0282 0.0000 4 6 2.0401 -0.7204 -1.2545 5 6 3.5306 -0.9098 -1.1156 6 6 4.4271 -1.2057 -2.0745 7 7 5.6458 -1.2774 -1.4876 8 1 6.4837 -1.4750 -1.9347 9 7 5.4835 -1.0144 -0.1189 10 6 4.2202 -0.7959 0.1041 11 6 3.5439 -0.4732 1.4145 12 1 3.9383 -1.1175 2.2003 13 6 3.7882 0.9707 1.7706 14 8 2.8518 1.7312 1.8948 15 7 5.0471 1.4166 1.9512 16 6 5.2692 2.7306 2.3555 17 6 4.2747 3.6907 2.1556 18 6 4.4977 4.9986 2.5583 19 6 5.7081 5.3138 3.1495 20 6 6.6689 4.3024 3.3229 21 6 7.9105 4.6091 3.9248 22 1 8.0873 5.5967 4.3247 23 6 8.9110 3.6326 4.0028 24 7 10.0231 3.8857 4.6421 25 14 8.6570 1.9684 3.1933 26 1 9.8550 1.1204 3.4186 27 1 8.4495 2.1540 1.7345 28 1 7.4646 1.3081 3.7827 29 7 6.4183 3.0536 2.9168 30 6 2.0391 -0.7187 1.2514 31 1 -0.3633 0.5158 0.8889 32 1 -0.3634 0.5117 -0.8911 33 1 -0.3634 -1.0276 0.0023 34 1 1.5528 -1.6911 -1.3448 35 1 1.8261 -0.1178 -2.1372 36 1 4.2133 -1.3602 -3.1217 37 1 5.7986 0.8222 1.7995 38 1 3.3390 3.4164 1.6913 39 1 3.7420 5.7562 2.4126 40 1 5.9121 6.3237 3.4736 41 1 10.1858 4.7725 4.9998 42 1 1.8552 -1.7887 1.1549 43 1 1.5126 -0.3389 2.1269 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882472888.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:32:51 Heat of formation + Delta-G solvation = 56.057908 kcal Electronic energy + Delta-G solvation = -27853.261260 eV Core-core repulsion = 24092.036050 eV Total energy + Delta-G solvation = -3761.225210 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.78997 -40.09525 -38.35330 -36.79933 -34.52279 -33.57671 -32.82729 -31.10820 -31.02804 -30.06460 -29.28757 -26.25609 -25.47048 -24.71072 -22.41849 -21.72136 -21.28877 -20.83116 -20.21096 -18.95870 -18.16586 -17.79115 -17.06571 -16.50817 -15.55477 -15.31987 -15.04931 -14.66720 -14.52697 -14.19577 -14.08734 -13.64161 -13.54689 -13.28001 -12.95792 -12.84439 -12.52821 -12.42688 -12.35093 -12.13129 -11.85466 -11.77692 -11.21787 -11.21323 -10.83062 -10.78405 -10.60704 -10.35572 -10.28917 -9.93483 -9.81508 -9.61067 -9.15050 -8.97047 -8.57698 -8.50941 -7.70519 -7.43862 -7.18704 -4.75426 1.70522 2.17512 2.52271 2.65793 2.67658 3.09935 3.40460 3.59312 3.68304 4.00999 4.26029 4.42442 4.43412 4.66142 4.67260 4.78649 4.92801 4.99488 5.15702 5.32573 5.36849 5.51226 5.55230 5.58213 5.63870 5.70327 5.80740 5.83029 5.89933 6.01633 6.12713 6.17091 6.18732 6.42790 6.46256 6.50495 6.54771 6.62237 7.12305 7.17065 7.23177 7.46143 7.47891 7.59568 7.66920 7.80626 8.14517 8.31691 8.48742 8.68012 9.44552 10.02526 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.015421 B = 0.004280 C = 0.003601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1815.298378 B = 6540.830063 C = 7773.283639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.095 4.095 3 H 0.087 0.913 4 C -0.037 4.037 5 C -0.225 4.225 6 C 0.059 3.941 7 N -0.479 5.479 8 H 0.441 0.559 9 N -0.276 5.276 10 C 0.082 3.918 11 C -0.026 4.026 12 H 0.117 0.883 13 C 0.528 3.472 14 O -0.505 6.505 15 N -0.649 5.649 16 C 0.386 3.614 17 C -0.313 4.313 18 C -0.036 4.036 19 C -0.277 4.277 20 C 0.273 3.727 21 C -0.477 4.477 22 H 0.083 0.917 23 C 0.045 3.955 24 N -0.807 5.807 25 Si 1.153 2.847 26 H -0.332 1.332 27 H -0.295 1.295 28 H -0.279 1.279 29 N -0.598 5.598 30 C -0.089 4.089 31 H 0.058 0.942 32 H 0.053 0.947 33 H 0.051 0.949 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.177 0.823 37 H 0.410 0.590 38 H 0.146 0.854 39 H 0.106 0.894 40 H 0.105 0.895 41 H 0.283 0.717 42 H 0.073 0.927 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.737 -12.821 -13.014 22.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.113 4.113 3 H 0.105 0.895 4 C -0.075 4.075 5 C -0.236 4.236 6 C -0.086 4.086 7 N -0.188 5.188 8 H 0.285 0.715 9 N -0.098 5.098 10 C -0.087 4.087 11 C -0.050 4.050 12 H 0.135 0.865 13 C 0.313 3.687 14 O -0.380 6.380 15 N -0.293 5.293 16 C 0.155 3.845 17 C -0.338 4.338 18 C -0.060 4.060 19 C -0.300 4.300 20 C 0.149 3.851 21 C -0.510 4.510 22 H 0.101 0.899 23 C -0.176 4.176 24 N -0.429 5.429 25 Si 0.988 3.012 26 H -0.266 1.266 27 H -0.224 1.224 28 H -0.207 1.207 29 N -0.323 5.323 30 C -0.127 4.127 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.070 0.930 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.194 0.806 37 H 0.246 0.754 38 H 0.163 0.837 39 H 0.124 0.876 40 H 0.123 0.877 41 H 0.094 0.906 42 H 0.092 0.908 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -11.902 -14.347 -12.431 22.406 hybrid contribution -0.900 2.060 -0.520 2.308 sum -12.802 -12.287 -12.952 21.969 Atomic orbital electron populations 1.21763 0.94831 1.01334 1.01973 1.21230 0.95667 1.01046 0.93375 0.89485 1.20108 0.88915 1.00189 0.98281 1.20116 0.97553 1.13960 0.91976 1.22108 0.85291 1.01957 0.99264 1.46365 1.08778 1.57723 1.05938 0.71468 1.77037 1.17737 1.21769 0.93294 1.21817 0.90914 1.00351 0.95601 1.19937 0.97670 0.94131 0.93245 0.86548 1.20183 0.82390 0.89393 0.76750 1.90568 1.42410 1.55679 1.49297 1.43304 1.08911 1.12052 1.65020 1.18153 0.91478 0.83066 0.91796 1.21740 1.02869 0.92793 1.16363 1.20950 0.95429 0.95229 0.94412 1.21604 0.96395 0.99503 1.12470 1.18281 0.93204 0.85315 0.88294 1.20722 0.96830 1.00653 1.32751 0.89861 1.27751 0.91036 1.06945 0.91913 1.70648 1.24813 1.24508 1.22929 0.81859 0.71804 0.71520 0.75976 1.26617 1.22382 1.20706 1.65990 1.21421 1.21087 1.23829 1.21458 0.90875 1.00760 0.99610 0.92250 0.92823 0.92986 0.91233 0.91256 0.80587 0.75382 0.83678 0.87623 0.87729 0.90615 0.90814 0.89724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.24 9.15 37.15 0.34 -0.90 16 2 C -0.09 -1.01 2.48 -90.41 -0.22 -1.23 16 3 H 0.09 1.20 6.29 -51.93 -0.33 0.87 16 4 C -0.04 -0.34 5.57 -27.59 -0.15 -0.49 16 5 C -0.22 -2.48 5.89 -104.95 -0.62 -3.10 16 6 C 0.06 0.53 11.96 -17.25 -0.21 0.33 16 7 N -0.48 -4.92 7.38 30.40 0.22 -4.70 16 8 H 0.44 3.14 8.96 -182.43 -1.64 1.50 16 9 N -0.28 -3.87 12.37 33.77 0.42 -3.45 16 10 C 0.08 1.09 6.16 -82.31 -0.51 0.58 16 11 C -0.03 -0.35 3.07 -92.62 -0.28 -0.63 16 12 H 0.12 1.36 8.14 -51.93 -0.42 0.94 16 13 C 0.53 9.22 6.67 -10.98 -0.07 9.15 16 14 O -0.50 -9.62 11.05 5.57 0.06 -9.56 16 15 N -0.65 -13.18 5.34 -11.40 -0.06 -13.25 16 16 C 0.39 9.28 7.51 -154.99 -1.16 8.12 16 17 C -0.31 -7.24 8.90 -38.89 -0.35 -7.59 16 18 C -0.04 -0.81 10.15 -39.39 -0.40 -1.21 16 19 C -0.28 -6.80 9.83 -38.66 -0.38 -7.18 16 20 C 0.27 7.41 6.40 -84.99 -0.54 6.87 16 21 C -0.48 -13.38 9.57 -37.73 -0.36 -13.74 16 22 H 0.08 2.31 8.05 -52.49 -0.42 1.89 16 23 C 0.04 1.25 5.52 -17.34 -0.10 1.15 16 24 N -0.81 -22.49 13.65 55.55 0.76 -21.73 16 25 Si 1.15 29.20 25.61 -169.99 -4.35 24.85 16 26 H -0.33 -8.29 7.11 56.52 0.40 -7.89 16 27 H -0.30 -7.50 7.11 56.52 0.40 -7.10 16 28 H -0.28 -7.01 6.61 56.52 0.37 -6.64 16 29 N -0.60 -15.81 4.53 -10.25 -0.05 -15.86 16 30 C -0.09 -0.96 4.27 -26.54 -0.11 -1.07 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.07 0.53 8.13 -51.93 -0.42 0.11 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.18 0.87 8.06 -52.49 -0.42 0.45 16 37 H 0.41 8.06 8.38 -40.82 -0.34 7.71 16 38 H 0.15 3.24 5.17 -52.92 -0.27 2.96 16 39 H 0.11 2.01 8.06 -52.49 -0.42 1.59 16 40 H 0.10 2.38 8.06 -52.48 -0.42 1.96 16 41 H 0.28 7.51 8.72 -40.82 -0.36 7.16 16 42 H 0.07 0.65 8.10 -51.93 -0.42 0.23 16 43 H 0.08 0.94 7.77 -51.93 -0.40 0.54 16 LS Contribution 348.32 15.07 5.25 5.25 Total: -1.00 -33.15 348.32 -9.69 -42.84 By element: Atomic # 1 Polarization: 13.35 SS G_CDS: -6.81 Total: 6.54 kcal Atomic # 6 Polarization: -5.82 SS G_CDS: -5.13 Total: -10.95 kcal Atomic # 7 Polarization: -60.27 SS G_CDS: 1.29 Total: -58.98 kcal Atomic # 8 Polarization: -9.62 SS G_CDS: 0.06 Total: -9.56 kcal Atomic # 14 Polarization: 29.20 SS G_CDS: -4.35 Total: 24.85 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -33.15 -9.69 -42.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882472888.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.900 kcal (2) G-P(sol) polarization free energy of solvation -33.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.842 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds