Wall clock time and date at job start Tue Mar 31 2020 14:32:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.38671 * 2 1 4 4 C 1.53393 * 109.42670 * 240.13317 * 2 1 3 5 5 C 1.50888 * 108.19296 * 189.37342 * 4 2 1 6 6 C 1.34567 * 128.32322 * 196.66416 * 5 4 2 7 7 N 1.35456 * 107.59432 * 179.97438 * 6 5 4 8 8 H 0.97003 * 126.02937 * 180.02562 * 7 6 5 9 9 N 1.40314 * 107.97602 * 359.97438 * 7 6 5 10 10 C 1.30132 * 108.11924 * 0.06880 * 9 7 6 11 11 C 1.50945 * 128.28739 * 179.85476 * 10 9 7 12 12 H 1.09006 * 109.71895 * 316.49439 * 11 10 9 13 13 C 1.50703 * 109.71545 * 77.09859 * 11 10 9 14 14 O 1.21268 * 119.99717 * 119.40016 * 13 11 10 15 15 N 1.34777 * 120.00013 * 299.39397 * 13 11 10 16 16 C 1.39265 * 120.00150 * 183.70564 * 15 13 11 17 17 C 1.39674 * 119.57009 * 339.10194 * 16 15 13 18 18 C 1.38655 * 119.49264 * 180.02562 * 17 16 15 19 19 C 1.38340 * 118.67144 * 0.02562 * 18 17 16 20 20 C 1.40580 * 119.12906 * 359.97438 * 19 18 17 21 21 C 1.41343 * 119.78910 * 179.97438 * 20 19 18 22 22 H 1.08001 * 119.99496 * 5.13772 * 21 20 19 23 23 C 1.40024 * 120.00236 * 185.12776 * 21 20 19 24 24 N 1.30745 * 119.99984 * 184.82511 * 23 21 20 25 25 Si 1.86801 * 119.99866 * 4.82653 * 23 21 20 26 26 H 1.48502 * 109.46965 * 179.97438 * 25 23 21 27 27 H 1.48507 * 109.47101 * 59.99551 * 25 23 21 28 28 H 1.48499 * 109.47125 * 299.99818 * 25 23 21 29 29 N 1.31898 * 119.57577 * 159.40057 * 16 15 13 30 30 C 1.53026 * 109.43384 * 119.87055 * 2 1 3 31 31 H 1.09000 * 109.46912 * 300.12532 * 1 2 3 32 32 H 1.08994 * 109.47433 * 60.13157 * 1 2 3 33 33 H 1.08998 * 109.47299 * 180.12893 * 1 2 3 34 34 H 1.08989 * 109.71482 * 309.04933 * 4 2 1 35 35 H 1.09001 * 109.71623 * 69.66013 * 4 2 1 36 36 H 1.07993 * 126.19679 * 359.83756 * 6 5 4 37 37 H 0.97006 * 119.99813 * 3.70649 * 15 13 11 38 38 H 1.07994 * 120.25615 * 0.04459 * 17 16 15 39 39 H 1.08000 * 120.66243 * 179.97438 * 18 17 16 40 40 H 1.08006 * 120.43745 * 179.97438 * 19 18 17 41 41 H 0.96994 * 119.99689 * 354.99182 * 24 23 21 42 42 H 1.09000 * 109.42184 * 71.69231 * 30 2 1 43 43 H 1.08997 * 109.41883 * 311.87469 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8918 1.0282 0.0000 4 6 2.0401 -0.7204 -1.2545 5 6 3.5306 -0.9098 -1.1156 6 6 4.4271 -1.2057 -2.0745 7 7 5.6458 -1.2774 -1.4876 8 1 6.4837 -1.4750 -1.9347 9 7 5.4835 -1.0144 -0.1189 10 6 4.2202 -0.7959 0.1041 11 6 3.5439 -0.4732 1.4145 12 1 3.9383 -1.1175 2.2003 13 6 3.7882 0.9707 1.7706 14 8 2.8518 1.7312 1.8948 15 7 5.0471 1.4166 1.9512 16 6 5.2692 2.7306 2.3555 17 6 4.2747 3.6907 2.1556 18 6 4.4977 4.9986 2.5583 19 6 5.7081 5.3138 3.1495 20 6 6.6689 4.3024 3.3229 21 6 7.9105 4.6091 3.9248 22 1 8.0873 5.5967 4.3247 23 6 8.9110 3.6326 4.0028 24 7 10.0231 3.8857 4.6421 25 14 8.6570 1.9684 3.1933 26 1 9.8550 1.1204 3.4186 27 1 8.4495 2.1540 1.7345 28 1 7.4646 1.3081 3.7827 29 7 6.4183 3.0536 2.9168 30 6 2.0391 -0.7187 1.2514 31 1 -0.3633 0.5158 0.8889 32 1 -0.3634 0.5117 -0.8911 33 1 -0.3634 -1.0276 0.0023 34 1 1.5528 -1.6911 -1.3448 35 1 1.8261 -0.1178 -2.1372 36 1 4.2133 -1.3602 -3.1217 37 1 5.7986 0.8222 1.7995 38 1 3.3390 3.4164 1.6913 39 1 3.7420 5.7562 2.4126 40 1 5.9121 6.3237 3.4736 41 1 10.1858 4.7725 4.9998 42 1 1.8552 -1.7887 1.1549 43 1 1.5126 -0.3389 2.1269 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882472888.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:32:50 Heat of formation + Delta-G solvation = 35.269486 kcal Electronic energy + Delta-G solvation = -27854.162714 eV Core-core repulsion = 24092.036050 eV Total energy + Delta-G solvation = -3762.126664 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.70716 -41.56810 -40.04524 -37.80070 -36.24282 -35.43807 -33.86106 -33.02430 -31.83742 -31.39755 -30.67809 -27.38857 -26.94804 -25.90846 -23.86945 -23.53106 -22.41099 -21.66864 -21.53478 -20.56290 -19.80027 -18.66250 -18.50457 -17.95963 -17.01338 -16.84879 -16.43682 -16.04384 -15.63829 -15.54512 -15.42768 -15.14111 -14.75151 -14.61110 -14.40179 -14.29149 -14.03330 -13.76696 -13.46150 -13.27597 -13.06309 -12.92856 -12.78955 -12.58050 -12.27690 -12.02808 -11.81408 -11.70552 -11.55972 -11.44343 -11.19366 -11.12619 -10.92044 -10.47882 -10.23440 -9.74276 -9.39141 -9.34721 -9.20511 -6.85681 0.44870 0.70033 0.90381 1.43050 1.50859 1.60633 1.67416 1.87898 1.99060 2.09170 2.39783 2.62186 3.38673 3.47719 3.52351 3.69059 3.91036 4.05248 4.07212 4.27248 4.36966 4.37546 4.51586 4.60369 4.63208 4.66737 4.74194 4.77129 4.88719 4.93796 4.97196 5.07183 5.11848 5.28534 5.31590 5.35328 5.39416 5.40995 5.48897 5.65461 5.67632 5.71050 5.77253 5.90839 6.23501 6.38009 6.46756 6.60841 6.65660 6.97301 7.47266 7.91698 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.015421 B = 0.004280 C = 0.003601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1815.298378 B = 6540.830063 C = 7773.283639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.095 4.095 3 H 0.050 0.950 4 C -0.030 4.030 5 C -0.245 4.245 6 C 0.076 3.924 7 N -0.474 5.474 8 H 0.452 0.548 9 N -0.321 5.321 10 C 0.065 3.935 11 C -0.021 4.021 12 H 0.128 0.872 13 C 0.527 3.473 14 O -0.521 6.521 15 N -0.654 5.654 16 C 0.372 3.628 17 C -0.308 4.308 18 C -0.027 4.027 19 C -0.290 4.290 20 C 0.257 3.743 21 C -0.508 4.508 22 H 0.072 0.928 23 C 0.019 3.981 24 N -0.828 5.828 25 Si 1.185 2.815 26 H -0.328 1.328 27 H -0.301 1.301 28 H -0.281 1.281 29 N -0.615 5.615 30 C -0.085 4.085 31 H 0.046 0.954 32 H 0.060 0.940 33 H 0.071 0.929 34 H 0.092 0.908 35 H 0.079 0.921 36 H 0.221 0.779 37 H 0.412 0.588 38 H 0.158 0.842 39 H 0.147 0.853 40 H 0.117 0.883 41 H 0.282 0.718 42 H 0.100 0.900 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.254 -14.580 -15.359 26.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.113 4.113 3 H 0.069 0.931 4 C -0.068 4.068 5 C -0.256 4.256 6 C -0.070 4.070 7 N -0.184 5.184 8 H 0.299 0.701 9 N -0.144 5.144 10 C -0.103 4.103 11 C -0.044 4.044 12 H 0.145 0.855 13 C 0.315 3.685 14 O -0.396 6.396 15 N -0.298 5.298 16 C 0.141 3.859 17 C -0.332 4.332 18 C -0.051 4.051 19 C -0.313 4.313 20 C 0.131 3.869 21 C -0.541 4.541 22 H 0.090 0.910 23 C -0.198 4.198 24 N -0.451 5.451 25 Si 1.019 2.981 26 H -0.261 1.261 27 H -0.229 1.229 28 H -0.209 1.209 29 N -0.341 5.341 30 C -0.123 4.123 31 H 0.065 0.935 32 H 0.079 0.921 33 H 0.090 0.910 34 H 0.110 0.890 35 H 0.098 0.902 36 H 0.238 0.762 37 H 0.248 0.752 38 H 0.175 0.825 39 H 0.165 0.835 40 H 0.135 0.865 41 H 0.093 0.907 42 H 0.119 0.881 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -14.434 -16.125 -14.782 26.208 hybrid contribution -0.312 2.606 0.081 2.626 sum -14.746 -13.519 -14.701 24.826 Atomic orbital electron populations 1.21720 0.93371 1.02577 1.01746 1.21180 0.96851 0.99107 0.94200 0.93130 1.20115 0.87775 1.01245 0.97625 1.20457 0.98837 1.14822 0.91500 1.22798 0.84016 0.99375 1.00792 1.46444 1.10048 1.56954 1.04983 0.70089 1.76951 1.18487 1.23436 0.95525 1.21860 0.91198 1.01121 0.96131 1.19988 0.99568 0.90691 0.94132 0.85451 1.21040 0.81007 0.91131 0.75325 1.90527 1.42555 1.56802 1.49701 1.43495 1.10201 1.10771 1.65365 1.18562 0.91013 0.84956 0.91364 1.22107 1.02889 0.93011 1.15183 1.21381 0.95400 0.95891 0.92445 1.21790 0.96782 0.99647 1.13038 1.18495 0.93552 0.86390 0.88436 1.20730 0.97985 1.00523 1.34881 0.90979 1.28377 0.90980 1.08475 0.91998 1.70656 1.25293 1.24716 1.24485 0.81407 0.71639 0.69961 0.75060 1.26108 1.22937 1.20859 1.65948 1.22688 1.21050 1.24399 1.21514 0.88846 1.02402 0.99555 0.93467 0.92133 0.90956 0.88995 0.90234 0.76225 0.75164 0.82535 0.83536 0.86486 0.90666 0.88124 0.90483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 9.15 71.98 0.66 -1.38 16 2 C -0.09 -1.81 2.48 -10.65 -0.03 -1.83 16 3 H 0.05 1.34 6.29 -2.38 -0.02 1.32 16 4 C -0.03 -0.44 5.57 30.04 0.17 -0.27 16 5 C -0.24 -4.70 5.89 -20.08 -0.12 -4.82 16 6 C 0.08 1.10 11.96 83.29 1.00 2.10 16 7 N -0.47 -8.68 7.38 -57.74 -0.43 -9.10 16 8 H 0.45 5.50 8.96 -213.18 -1.91 3.59 16 9 N -0.32 -8.59 12.37 -47.08 -0.58 -9.18 16 10 C 0.06 1.61 6.16 43.46 0.27 1.88 16 11 C -0.02 -0.52 3.07 -12.09 -0.04 -0.56 16 12 H 0.13 2.85 8.14 -2.38 -0.02 2.83 16 13 C 0.53 18.09 6.67 87.66 0.58 18.68 16 14 O -0.52 -19.45 11.05 -2.99 -0.03 -19.48 16 15 N -0.65 -26.41 5.34 -308.38 -1.65 -28.05 16 16 C 0.37 17.77 7.51 133.25 1.00 18.77 16 17 C -0.31 -13.83 8.90 22.72 0.20 -13.63 16 18 C -0.03 -1.16 10.15 22.39 0.23 -0.93 16 19 C -0.29 -14.07 9.83 22.87 0.22 -13.85 16 20 C 0.26 14.08 6.40 40.20 0.26 14.34 16 21 C -0.51 -29.36 9.57 23.47 0.22 -29.13 16 22 H 0.07 4.18 8.05 -2.91 -0.02 4.15 16 23 C 0.02 1.08 5.52 85.29 0.47 1.55 16 24 N -0.83 -47.39 13.65 21.84 0.30 -47.09 16 25 Si 1.19 60.54 25.61 68.60 1.76 62.30 16 26 H -0.33 -16.21 7.11 99.48 0.71 -15.51 16 27 H -0.30 -15.39 7.11 99.48 0.71 -14.69 16 28 H -0.28 -14.20 6.61 99.48 0.66 -13.54 16 29 N -0.61 -32.72 4.53 -186.36 -0.85 -33.56 16 30 C -0.09 -1.66 4.27 30.72 0.13 -1.53 16 31 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.09 0.97 8.13 -2.39 -0.02 0.95 16 35 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.22 1.04 8.06 -2.91 -0.02 1.02 16 37 H 0.41 16.24 8.38 -92.70 -0.78 15.46 16 38 H 0.16 6.73 5.17 -9.78 -0.05 6.68 16 39 H 0.15 5.05 8.06 -2.91 -0.02 5.03 16 40 H 0.12 5.27 8.06 -2.91 -0.02 5.25 16 41 H 0.28 15.55 8.72 -92.71 -0.81 14.74 16 42 H 0.10 1.44 8.10 -2.39 -0.02 1.42 16 43 H 0.08 1.61 7.77 -2.39 -0.02 1.59 16 Total: -1.00 -73.14 348.32 2.01 -71.13 By element: Atomic # 1 Polarization: 25.39 SS G_CDS: -1.74 Total: 23.65 kcal Atomic # 6 Polarization: -15.84 SS G_CDS: 5.23 Total: -10.61 kcal Atomic # 7 Polarization: -123.78 SS G_CDS: -3.20 Total: -126.98 kcal Atomic # 8 Polarization: -19.45 SS G_CDS: -0.03 Total: -19.48 kcal Atomic # 14 Polarization: 60.54 SS G_CDS: 1.76 Total: 62.30 kcal Total: -73.14 2.01 -71.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882472888.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.396 kcal (2) G-P(sol) polarization free energy of solvation -73.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.126 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds