Wall clock time and date at job start Tue Mar 31 2020 14:39:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.53079 * 2 1 4 4 C 1.53162 * 109.58691 * 120.18270 * 2 1 3 5 5 C 1.53219 * 109.54674 * 189.17014 * 4 2 1 6 6 N 1.46685 * 108.84621 * 309.36105 * 5 4 2 7 7 N 1.39615 * 127.23087 * 197.45123 * 6 5 4 8 8 C 1.30598 * 108.89983 * 179.62765 * 7 6 5 9 9 C 1.41523 * 108.07054 * 0.46333 * 8 7 6 10 10 C 1.47307 * 126.49847 * 179.83213 * 9 8 7 11 11 O 1.21613 * 119.99710 * 212.31616 * 10 9 8 12 12 N 1.34780 * 120.00211 * 32.31705 * 10 9 8 13 13 C 1.37101 * 119.99748 * 186.02985 * 12 10 9 14 14 H 1.07997 * 119.99640 * 224.79192 * 13 12 10 15 15 C 1.38913 * 120.00071 * 44.79587 * 13 12 10 16 16 N 1.31414 * 120.00144 * 29.73168 * 15 13 12 17 17 Si 1.86796 * 119.99806 * 209.73384 * 15 13 12 18 18 H 1.48503 * 109.47186 * 179.97438 * 17 15 13 19 19 H 1.48500 * 109.47086 * 299.99727 * 17 15 13 20 20 H 1.48494 * 109.47627 * 59.99785 * 17 15 13 21 21 C 1.39334 * 119.99715 * 6.02913 * 12 10 9 22 22 C 1.39089 * 119.69919 * 227.93828 * 21 12 10 23 23 C 1.38368 * 119.10131 * 179.75859 * 22 21 12 24 24 C 1.38841 * 118.49088 * 0.50633 * 23 22 21 25 25 C 1.38147 * 119.31224 * 359.73244 * 24 23 22 26 26 N 1.31880 * 120.85548 * 0.02562 * 25 24 23 27 27 C 1.34616 * 124.41902 * 17.40388 * 6 5 4 28 28 C 1.50799 * 124.58064 * 0.09079 * 27 6 5 29 29 H 1.08997 * 109.47039 * 180.14668 * 1 2 3 30 30 H 1.09003 * 109.47023 * 300.14440 * 1 2 3 31 31 H 1.08998 * 109.47164 * 60.14533 * 1 2 3 32 32 H 1.09006 * 109.45663 * 309.18918 * 4 2 1 33 33 H 1.08997 * 109.46443 * 69.14740 * 4 2 1 34 34 H 1.09003 * 109.57731 * 69.17240 * 5 4 2 35 35 H 1.09006 * 109.57214 * 189.42215 * 5 4 2 36 36 H 1.07999 * 125.96814 * 180.30662 * 8 7 6 37 37 H 0.97005 * 120.00309 * 174.96455 * 16 15 13 38 38 H 1.08004 * 120.45162 * 359.97438 * 22 21 12 39 39 H 1.07994 * 120.75752 * 180.23785 * 23 22 21 40 40 H 1.07998 * 120.34295 * 179.71220 * 24 23 22 41 41 H 1.08001 * 119.57024 * 179.97438 * 25 24 23 42 42 H 1.09005 * 109.71699 * 135.34639 * 28 27 6 43 43 H 1.09000 * 109.72242 * 255.94747 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8944 1.0272 0.0000 4 6 2.0435 -0.7255 1.2474 5 6 3.5583 -0.5291 1.3675 6 7 4.1837 -0.8730 0.0860 7 7 5.5303 -1.1585 -0.1471 8 6 5.6930 -1.4245 -1.4153 9 6 4.4354 -1.3063 -2.0535 10 6 4.1560 -1.5158 -3.4846 11 8 3.2834 -0.8713 -4.0343 12 7 4.8673 -2.4215 -4.1846 13 6 4.6940 -2.5298 -5.5403 14 1 4.6043 -3.5043 -5.9971 15 6 4.6339 -1.3861 -6.3264 16 7 5.2847 -0.3039 -5.9628 17 14 3.6278 -1.3864 -7.9003 18 1 3.7260 -0.0550 -8.5509 19 1 4.1499 -2.4276 -8.8213 20 1 2.2072 -1.6764 -7.5797 21 6 5.7788 -3.2478 -3.5305 22 6 7.0630 -3.3989 -4.0430 23 6 7.9598 -4.2185 -3.3807 24 6 7.5365 -4.8698 -2.2299 25 6 6.2444 -4.6776 -1.7804 26 7 5.4130 -3.8863 -2.4299 27 6 3.5226 -0.9647 -1.0831 28 6 2.0430 -0.7263 -1.2506 29 1 -0.3633 -1.0276 0.0026 30 1 -0.3633 0.5161 0.8887 31 1 -0.3633 0.5116 -0.8913 32 1 1.5533 -0.3183 2.1318 33 1 1.8206 -1.7893 1.1663 34 1 3.7735 0.5112 1.6114 35 1 3.9493 -1.1767 2.1523 36 1 6.6251 -1.6863 -1.8940 37 1 5.3029 0.4705 -6.5468 38 1 7.3574 -2.8807 -4.9438 39 1 8.9647 -4.3520 -3.7528 40 1 8.2102 -5.5202 -1.6920 41 1 5.9106 -5.1825 -0.8859 42 1 1.8673 -0.1096 -2.1320 43 1 1.5269 -1.6800 -1.3604 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892472611.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:39:23 Heat of formation + Delta-G solvation = 91.000919 kcal Electronic energy + Delta-G solvation = -28578.188566 eV Core-core repulsion = 24818.478599 eV Total energy + Delta-G solvation = -3759.709967 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.14362 -39.63271 -37.76143 -36.91500 -34.37986 -32.77499 -32.12734 -31.52191 -30.64141 -29.05352 -28.65653 -26.59783 -25.02974 -23.69931 -22.93772 -22.37901 -21.27578 -21.14782 -19.56597 -18.46795 -17.50839 -17.05855 -15.78803 -15.49704 -15.35811 -15.12166 -14.75405 -14.63600 -14.26777 -14.15729 -13.79280 -13.68281 -13.49137 -13.05537 -13.01999 -12.74480 -12.44454 -12.29121 -12.16450 -11.99722 -11.65960 -11.48824 -11.19341 -11.02092 -10.90208 -10.79550 -10.77071 -10.72921 -10.38272 -10.15523 -9.31235 -9.03379 -8.93495 -8.69193 -8.51571 -8.33476 -7.78312 -7.20003 -6.40401 -4.03658 1.83643 2.02704 2.31483 2.81659 3.06397 3.26470 3.32732 3.39925 4.10831 4.33631 4.46545 4.57890 4.63269 4.66581 4.73266 4.86643 5.14087 5.17057 5.22767 5.33629 5.41059 5.46904 5.51024 5.55636 5.62917 5.70593 5.76229 5.77257 5.85866 5.87960 6.00963 6.05714 6.17369 6.25219 6.29710 6.33607 6.53636 6.58342 6.83342 6.93596 7.09296 7.37584 7.43458 7.51431 8.13703 8.21219 8.57486 8.88729 9.02200 9.38964 10.02722 10.67805 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.010505 B = 0.005999 C = 0.004172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2664.795552 B = 4666.569694 C = 6709.151441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.098 4.098 3 H 0.076 0.924 4 C -0.131 4.131 5 C 0.137 3.863 6 N -0.370 5.370 7 N -0.310 5.310 8 C 0.096 3.904 9 C -0.237 4.237 10 C 0.586 3.414 11 O -0.530 6.530 12 N -0.387 5.387 13 C -0.364 4.364 14 H 0.087 0.913 15 C 0.089 3.911 16 N -0.826 5.826 17 Si 0.919 3.081 18 H -0.285 1.285 19 H -0.275 1.275 20 H -0.268 1.268 21 C 0.366 3.634 22 C -0.179 4.179 23 C -0.067 4.067 24 C -0.228 4.228 25 C 0.120 3.880 26 N -0.511 5.511 27 C 0.128 3.872 28 C -0.053 4.053 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.061 0.939 32 H 0.088 0.912 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.088 0.912 36 H 0.172 0.828 37 H 0.273 0.727 38 H 0.139 0.861 39 H 0.123 0.877 40 H 0.119 0.881 41 H 0.140 0.860 42 H 0.105 0.895 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.194 -2.067 12.380 12.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.117 4.117 3 H 0.094 0.906 4 C -0.170 4.170 5 C 0.016 3.984 6 N -0.153 5.153 7 N -0.130 5.130 8 C -0.091 4.091 9 C -0.252 4.252 10 C 0.376 3.624 11 O -0.407 6.407 12 N -0.100 5.100 13 C -0.489 4.489 14 H 0.105 0.895 15 C -0.125 4.125 16 N -0.456 5.456 17 Si 0.745 3.255 18 H -0.210 1.210 19 H -0.201 1.201 20 H -0.193 1.193 21 C 0.138 3.862 22 C -0.202 4.202 23 C -0.093 4.093 24 C -0.250 4.250 25 C -0.039 4.039 26 N -0.226 5.226 27 C -0.001 4.001 28 C -0.092 4.092 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.106 0.894 33 H 0.094 0.906 34 H 0.096 0.904 35 H 0.107 0.893 36 H 0.189 0.811 37 H 0.083 0.917 38 H 0.156 0.844 39 H 0.141 0.859 40 H 0.137 0.863 41 H 0.157 0.843 42 H 0.123 0.877 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -3.043 -1.139 13.594 13.977 hybrid contribution 0.467 -0.259 -1.822 1.898 sum -2.576 -1.398 11.773 12.132 Atomic orbital electron populations 1.21783 0.94096 1.02193 1.02008 1.21301 0.96499 0.99815 0.94092 0.90599 1.22033 0.93200 1.02396 0.99326 1.21680 0.92431 1.01422 0.82847 1.48248 1.05663 1.54735 1.06658 1.76918 0.93734 1.24523 1.17828 1.23851 0.98194 0.96680 0.90421 1.19983 0.93116 1.16570 0.95501 1.17128 0.80644 0.81426 0.83215 1.90564 1.31935 1.47681 1.70527 1.40856 1.31804 1.30825 1.06560 1.18949 1.56002 0.94024 0.79904 0.89548 1.25291 0.93535 0.94927 0.98751 1.69910 1.33293 1.04754 1.37666 0.86164 0.81630 0.77244 0.80436 1.21021 1.20054 1.19306 1.19069 0.87638 0.91429 0.88084 1.21912 0.92713 1.02055 1.03545 1.21317 0.99034 0.94620 0.94357 1.21731 0.98331 1.05388 0.99565 1.22253 0.90009 0.94004 0.97637 1.67450 1.36831 1.08557 1.09792 1.21058 0.94998 0.98466 0.85626 1.20549 0.87469 1.02145 0.98999 0.92355 0.92590 0.91992 0.89394 0.90570 0.90403 0.89338 0.81094 0.91736 0.84359 0.85908 0.86254 0.84274 0.87699 0.89488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.38 9.18 37.16 0.34 -1.04 16 2 C -0.10 -1.16 2.76 -90.30 -0.25 -1.41 16 3 H 0.08 0.91 8.12 -51.93 -0.42 0.49 16 4 C -0.13 -1.32 5.23 -26.53 -0.14 -1.46 16 5 C 0.14 1.67 7.27 -3.83 -0.03 1.64 16 6 N -0.37 -6.54 4.01 -56.37 -0.23 -6.76 16 7 N -0.31 -6.21 12.54 30.94 0.39 -5.82 16 8 C 0.10 2.07 9.42 -16.83 -0.16 1.91 16 9 C -0.24 -5.50 5.01 -105.21 -0.53 -6.03 16 10 C 0.59 15.63 6.75 -12.57 -0.08 15.55 16 11 O -0.53 -15.37 14.45 5.27 0.08 -15.29 16 12 N -0.39 -10.17 2.68 -61.88 -0.17 -10.33 16 13 C -0.36 -9.96 8.39 -14.95 -0.13 -10.08 16 14 H 0.09 2.32 7.98 -52.49 -0.42 1.90 16 15 C 0.09 2.41 4.03 -17.48 -0.07 2.34 16 16 N -0.83 -23.38 12.87 55.49 0.71 -22.66 16 17 Si 0.92 21.43 29.65 -169.99 -5.04 16.39 16 18 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 19 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 20 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 21 C 0.37 8.39 4.32 -154.71 -0.67 7.72 16 22 C -0.18 -3.66 9.37 -39.22 -0.37 -4.03 16 23 C -0.07 -1.11 10.17 -39.31 -0.40 -1.50 16 24 C -0.23 -3.52 10.11 -39.39 -0.40 -3.92 16 25 C 0.12 2.09 11.15 -17.56 -0.20 1.89 16 26 N -0.51 -10.85 7.73 -12.36 -0.10 -10.95 16 27 C 0.13 2.52 6.65 -81.58 -0.54 1.97 16 28 C -0.05 -0.87 5.14 -27.60 -0.14 -1.01 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.09 0.63 8.12 -51.93 -0.42 0.21 16 33 H 0.08 0.80 8.12 -51.93 -0.42 0.38 16 34 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.17 3.74 6.78 -52.49 -0.36 3.38 16 37 H 0.27 7.31 8.32 -40.82 -0.34 6.97 16 38 H 0.14 2.99 7.87 -52.48 -0.41 2.57 16 39 H 0.12 1.63 8.06 -52.49 -0.42 1.21 16 40 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 41 H 0.14 2.04 8.06 -52.49 -0.42 1.62 16 42 H 0.10 1.94 7.34 -51.93 -0.38 1.56 16 43 H 0.09 1.40 8.11 -51.93 -0.42 0.98 16 LS Contribution 355.82 15.07 5.36 5.36 Total: -1.00 -33.21 355.82 -8.51 -41.72 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: -5.77 Total: 5.77 kcal Atomic # 6 Polarization: 6.32 SS G_CDS: -3.75 Total: 2.57 kcal Atomic # 7 Polarization: -57.13 SS G_CDS: 0.61 Total: -56.52 kcal Atomic # 8 Polarization: -15.37 SS G_CDS: 0.08 Total: -15.29 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.04 Total: 16.39 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -33.21 -8.51 -41.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892472611.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.725 kcal (2) G-P(sol) polarization free energy of solvation -33.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.724 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds