Wall clock time and date at job start Tue Mar 31 2020 14:39:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.53079 * 2 1 4 4 C 1.53162 * 109.58691 * 120.18270 * 2 1 3 5 5 C 1.53219 * 109.54674 * 189.17014 * 4 2 1 6 6 N 1.46685 * 108.84621 * 309.36105 * 5 4 2 7 7 N 1.39615 * 127.23087 * 197.45123 * 6 5 4 8 8 C 1.30598 * 108.89983 * 179.62765 * 7 6 5 9 9 C 1.41523 * 108.07054 * 0.46333 * 8 7 6 10 10 C 1.47307 * 126.49847 * 179.83213 * 9 8 7 11 11 O 1.21613 * 119.99710 * 212.31616 * 10 9 8 12 12 N 1.34780 * 120.00211 * 32.31705 * 10 9 8 13 13 C 1.37101 * 119.99748 * 186.02985 * 12 10 9 14 14 H 1.07997 * 119.99640 * 224.79192 * 13 12 10 15 15 C 1.38913 * 120.00071 * 44.79587 * 13 12 10 16 16 N 1.31414 * 120.00144 * 29.73168 * 15 13 12 17 17 Si 1.86796 * 119.99806 * 209.73384 * 15 13 12 18 18 H 1.48503 * 109.47186 * 179.97438 * 17 15 13 19 19 H 1.48500 * 109.47086 * 299.99727 * 17 15 13 20 20 H 1.48494 * 109.47627 * 59.99785 * 17 15 13 21 21 C 1.39334 * 119.99715 * 6.02913 * 12 10 9 22 22 C 1.39089 * 119.69919 * 227.93828 * 21 12 10 23 23 C 1.38368 * 119.10131 * 179.75859 * 22 21 12 24 24 C 1.38841 * 118.49088 * 0.50633 * 23 22 21 25 25 C 1.38147 * 119.31224 * 359.73244 * 24 23 22 26 26 N 1.31880 * 120.85548 * 0.02562 * 25 24 23 27 27 C 1.34616 * 124.41902 * 17.40388 * 6 5 4 28 28 C 1.50799 * 124.58064 * 0.09079 * 27 6 5 29 29 H 1.08997 * 109.47039 * 180.14668 * 1 2 3 30 30 H 1.09003 * 109.47023 * 300.14440 * 1 2 3 31 31 H 1.08998 * 109.47164 * 60.14533 * 1 2 3 32 32 H 1.09006 * 109.45663 * 309.18918 * 4 2 1 33 33 H 1.08997 * 109.46443 * 69.14740 * 4 2 1 34 34 H 1.09003 * 109.57731 * 69.17240 * 5 4 2 35 35 H 1.09006 * 109.57214 * 189.42215 * 5 4 2 36 36 H 1.07999 * 125.96814 * 180.30662 * 8 7 6 37 37 H 0.97005 * 120.00309 * 174.96455 * 16 15 13 38 38 H 1.08004 * 120.45162 * 359.97438 * 22 21 12 39 39 H 1.07994 * 120.75752 * 180.23785 * 23 22 21 40 40 H 1.07998 * 120.34295 * 179.71220 * 24 23 22 41 41 H 1.08001 * 119.57024 * 179.97438 * 25 24 23 42 42 H 1.09005 * 109.71699 * 135.34639 * 28 27 6 43 43 H 1.09000 * 109.72242 * 255.94747 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8944 1.0272 0.0000 4 6 2.0435 -0.7255 1.2474 5 6 3.5583 -0.5291 1.3675 6 7 4.1837 -0.8730 0.0860 7 7 5.5303 -1.1585 -0.1471 8 6 5.6930 -1.4245 -1.4153 9 6 4.4354 -1.3063 -2.0535 10 6 4.1560 -1.5158 -3.4846 11 8 3.2834 -0.8713 -4.0343 12 7 4.8673 -2.4215 -4.1846 13 6 4.6940 -2.5298 -5.5403 14 1 4.6043 -3.5043 -5.9971 15 6 4.6339 -1.3861 -6.3264 16 7 5.2847 -0.3039 -5.9628 17 14 3.6278 -1.3864 -7.9003 18 1 3.7260 -0.0550 -8.5509 19 1 4.1499 -2.4276 -8.8213 20 1 2.2072 -1.6764 -7.5797 21 6 5.7788 -3.2478 -3.5305 22 6 7.0630 -3.3989 -4.0430 23 6 7.9598 -4.2185 -3.3807 24 6 7.5365 -4.8698 -2.2299 25 6 6.2444 -4.6776 -1.7804 26 7 5.4130 -3.8863 -2.4299 27 6 3.5226 -0.9647 -1.0831 28 6 2.0430 -0.7263 -1.2506 29 1 -0.3633 -1.0276 0.0026 30 1 -0.3633 0.5161 0.8887 31 1 -0.3633 0.5116 -0.8913 32 1 1.5533 -0.3183 2.1318 33 1 1.8206 -1.7893 1.1663 34 1 3.7735 0.5112 1.6114 35 1 3.9493 -1.1767 2.1523 36 1 6.6251 -1.6863 -1.8940 37 1 5.3029 0.4705 -6.5468 38 1 7.3574 -2.8807 -4.9438 39 1 8.9647 -4.3520 -3.7528 40 1 8.2102 -5.5202 -1.6920 41 1 5.9106 -5.1825 -0.8859 42 1 1.8673 -0.1096 -2.1320 43 1 1.5269 -1.6800 -1.3604 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892472611.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:39:22 Heat of formation + Delta-G solvation = 70.299032 kcal Electronic energy + Delta-G solvation = -28579.086267 eV Core-core repulsion = 24818.478599 eV Total energy + Delta-G solvation = -3760.607669 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.65698 -41.21998 -39.53876 -38.05903 -36.26218 -34.32217 -33.72012 -33.08090 -32.01911 -30.65335 -30.01204 -27.89165 -26.83526 -24.95311 -24.39599 -23.91716 -22.85176 -22.48541 -21.04767 -19.82534 -19.32284 -18.69702 -17.44486 -16.89172 -16.77653 -16.65189 -16.30536 -16.07974 -15.84682 -15.57721 -15.25129 -15.14509 -14.80917 -14.59386 -14.43464 -14.33223 -13.79444 -13.68304 -13.52996 -13.30305 -13.08478 -12.95466 -12.79803 -12.59385 -12.49989 -12.20435 -12.15343 -11.87674 -11.67236 -11.48839 -11.04786 -10.71634 -10.64529 -10.33513 -10.16189 -10.04570 -9.42622 -8.99489 -8.43696 -6.12183 0.32314 0.57595 0.76332 1.29710 1.38584 1.46611 1.49668 1.50902 2.22652 2.58255 2.87076 2.99822 3.28917 3.38856 3.51232 3.67106 3.67966 3.83166 4.01994 4.19656 4.25423 4.28779 4.31388 4.37161 4.45156 4.50008 4.61306 4.65578 4.71202 4.75404 4.84648 4.86266 4.93656 5.05990 5.08682 5.12916 5.29479 5.35218 5.39698 5.41211 5.46230 5.48831 5.91411 6.04562 6.14551 6.62571 6.74909 6.95843 7.30986 7.45167 8.10733 8.65813 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.010505 B = 0.005999 C = 0.004172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2664.795552 B = 4666.569694 C = 6709.151441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.091 4.091 3 H 0.075 0.925 4 C -0.121 4.121 5 C 0.121 3.879 6 N -0.356 5.356 7 N -0.311 5.311 8 C 0.091 3.909 9 C -0.278 4.278 10 C 0.573 3.427 11 O -0.579 6.579 12 N -0.404 5.404 13 C -0.383 4.383 14 H 0.079 0.921 15 C 0.048 3.952 16 N -0.864 5.864 17 Si 0.975 3.025 18 H -0.278 1.278 19 H -0.252 1.252 20 H -0.281 1.281 21 C 0.339 3.661 22 C -0.195 4.195 23 C -0.055 4.055 24 C -0.196 4.196 25 C 0.109 3.891 26 N -0.530 5.530 27 C 0.134 3.866 28 C -0.053 4.053 29 H 0.061 0.939 30 H 0.085 0.915 31 H 0.050 0.950 32 H 0.134 0.866 33 H 0.074 0.926 34 H 0.098 0.902 35 H 0.111 0.889 36 H 0.161 0.839 37 H 0.271 0.729 38 H 0.115 0.885 39 H 0.163 0.837 40 H 0.170 0.830 41 H 0.171 0.829 42 H 0.073 0.927 43 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.779 -3.518 15.774 16.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.110 4.110 3 H 0.093 0.907 4 C -0.159 4.159 5 C 0.003 3.997 6 N -0.138 5.138 7 N -0.132 5.132 8 C -0.095 4.095 9 C -0.293 4.293 10 C 0.365 3.635 11 O -0.460 6.460 12 N -0.119 5.119 13 C -0.508 4.508 14 H 0.096 0.904 15 C -0.161 4.161 16 N -0.496 5.496 17 Si 0.798 3.202 18 H -0.203 1.203 19 H -0.176 1.176 20 H -0.207 1.207 21 C 0.113 3.887 22 C -0.219 4.219 23 C -0.081 4.081 24 C -0.217 4.217 25 C -0.050 4.050 26 N -0.245 5.245 27 C 0.002 3.998 28 C -0.091 4.091 29 H 0.080 0.920 30 H 0.104 0.896 31 H 0.069 0.931 32 H 0.152 0.848 33 H 0.093 0.907 34 H 0.116 0.884 35 H 0.129 0.871 36 H 0.178 0.822 37 H 0.081 0.919 38 H 0.133 0.867 39 H 0.181 0.819 40 H 0.188 0.812 41 H 0.188 0.812 42 H 0.092 0.908 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -2.572 -2.643 17.028 17.423 hybrid contribution 0.457 0.021 -2.625 2.665 sum -2.115 -2.622 14.403 14.792 Atomic orbital electron populations 1.21759 0.92133 1.02773 1.02944 1.21289 0.98045 0.99176 0.92468 0.90679 1.22069 0.91633 1.02350 0.99864 1.22325 0.93647 1.03142 0.80635 1.48725 1.04661 1.52548 1.07848 1.76823 0.95291 1.24417 1.16652 1.23582 0.97402 0.97651 0.90861 1.19927 0.94984 1.19828 0.94535 1.17653 0.80203 0.81042 0.84648 1.90490 1.34142 1.49538 1.71829 1.40913 1.33033 1.31577 1.06370 1.19046 1.56860 0.93892 0.81031 0.90355 1.26056 0.93889 0.94480 1.01718 1.69987 1.35077 1.05410 1.39079 0.85317 0.79199 0.78075 0.77591 1.20292 1.17563 1.20729 1.19055 0.88173 0.91888 0.89633 1.21866 0.92988 1.03592 1.03436 1.21749 0.99817 0.92641 0.93925 1.22268 0.97846 1.03417 0.98143 1.22933 0.90714 0.93182 0.98196 1.67380 1.38581 1.09127 1.09365 1.21414 0.96066 0.96662 0.85692 1.20613 0.85812 1.02136 1.00583 0.91982 0.89645 0.93081 0.84846 0.90731 0.88385 0.87074 0.82177 0.91925 0.86733 0.81919 0.81227 0.81161 0.90825 0.89649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.34 9.18 71.98 0.66 -1.68 16 2 C -0.09 -1.98 2.76 -10.59 -0.03 -2.01 16 3 H 0.07 1.67 8.12 -2.39 -0.02 1.65 16 4 C -0.12 -1.97 5.23 30.72 0.16 -1.81 16 5 C 0.12 2.53 7.27 86.42 0.63 3.16 16 6 N -0.36 -12.16 4.01 -332.27 -1.33 -13.49 16 7 N -0.31 -12.28 12.54 -56.04 -0.70 -12.99 16 8 C 0.09 4.08 9.42 85.69 0.81 4.89 16 9 C -0.28 -13.58 5.01 -20.25 -0.10 -13.68 16 10 C 0.57 32.87 6.75 86.63 0.58 33.46 16 11 O -0.58 -36.41 14.45 -4.07 -0.06 -36.47 16 12 N -0.40 -22.75 2.68 -467.93 -1.25 -24.00 16 13 C -0.38 -22.43 8.39 84.03 0.70 -21.72 16 14 H 0.08 4.51 7.98 -2.91 -0.02 4.49 16 15 C 0.05 2.78 4.03 84.92 0.34 3.12 16 16 N -0.86 -52.21 12.87 21.66 0.28 -51.93 16 17 Si 0.98 46.19 29.65 68.60 2.03 48.23 16 18 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 19 H -0.25 -10.82 7.11 99.48 0.71 -10.11 16 20 H -0.28 -13.80 7.11 99.48 0.71 -13.09 16 21 C 0.34 16.19 4.32 132.94 0.57 16.77 16 22 C -0.20 -8.22 9.37 22.51 0.21 -8.01 16 23 C -0.06 -1.68 10.17 22.45 0.23 -1.46 16 24 C -0.20 -5.23 10.11 22.39 0.23 -5.01 16 25 C 0.11 3.51 11.15 84.66 0.94 4.46 16 26 N -0.53 -22.69 7.73 -193.00 -1.49 -24.18 16 27 C 0.13 5.39 6.65 42.00 0.28 5.67 16 28 C -0.05 -1.78 5.14 30.03 0.15 -1.63 16 29 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.05 0.97 8.14 -2.39 -0.02 0.96 16 32 H 0.13 1.09 8.12 -2.38 -0.02 1.07 16 33 H 0.07 1.30 8.12 -2.39 -0.02 1.28 16 34 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.11 1.90 8.14 -2.38 -0.02 1.88 16 36 H 0.16 7.32 6.78 -2.91 -0.02 7.30 16 37 H 0.27 15.52 8.32 -92.70 -0.77 14.75 16 38 H 0.11 5.29 7.87 -2.91 -0.02 5.27 16 39 H 0.16 3.65 8.06 -2.91 -0.02 3.63 16 40 H 0.17 2.96 8.06 -2.91 -0.02 2.94 16 41 H 0.17 4.36 8.06 -2.91 -0.02 4.33 16 42 H 0.07 2.96 7.34 -2.38 -0.02 2.95 16 43 H 0.09 2.87 8.11 -2.39 -0.02 2.85 16 Total: -1.00 -81.36 355.82 4.87 -76.49 By element: Atomic # 1 Polarization: 22.81 SS G_CDS: 1.02 Total: 23.83 kcal Atomic # 6 Polarization: 8.13 SS G_CDS: 6.37 Total: 14.51 kcal Atomic # 7 Polarization: -122.09 SS G_CDS: -4.50 Total: -126.59 kcal Atomic # 8 Polarization: -36.41 SS G_CDS: -0.06 Total: -36.47 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 2.03 Total: 48.23 kcal Total: -81.36 4.87 -76.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892472611.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.791 kcal (2) G-P(sol) polarization free energy of solvation -81.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.492 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds