Wall clock time and date at job start Tue Mar 31 2020 14:33:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.57874 * 2 1 4 4 C 1.53265 * 109.57934 * 239.73185 * 2 1 3 5 5 C 1.53166 * 109.43940 * 189.96374 * 4 2 1 6 6 C 1.53382 * 109.22268 * 69.35804 * 5 4 2 7 7 C 1.51119 * 108.24527 * 311.13712 * 6 5 4 8 8 N 1.30571 * 127.08491 * 196.03184 * 7 6 5 9 9 C 1.33430 * 109.70666 * 179.97438 * 8 7 6 10 10 C 1.36983 * 107.82111 * 0.02562 * 9 8 7 11 11 C 1.46577 * 126.92088 * 180.02562 * 10 9 8 12 12 O 1.21711 * 120.00003 * 142.04880 * 11 10 9 13 13 N 1.34776 * 120.00001 * 322.04366 * 11 10 9 14 14 C 1.37006 * 119.99857 * 127.60663 * 13 11 10 15 15 H 1.07997 * 120.00278 * 160.45040 * 14 13 11 16 16 C 1.38950 * 120.00111 * 340.71957 * 14 13 11 17 17 N 1.31401 * 119.99918 * 347.18961 * 16 14 13 18 18 Si 1.86797 * 119.99974 * 167.18319 * 16 14 13 19 19 H 1.48504 * 109.46995 * 65.00784 * 18 16 14 20 20 H 1.48506 * 109.47099 * 185.00664 * 18 16 14 21 21 H 1.48491 * 109.47357 * 305.00607 * 18 16 14 22 22 C 1.39313 * 120.00247 * 307.60389 * 13 11 10 23 23 C 1.39099 * 119.70267 * 184.72430 * 22 13 11 24 24 C 1.38368 * 119.09824 * 179.70952 * 23 22 13 25 25 C 1.38837 * 118.49090 * 0.55957 * 24 23 22 26 26 C 1.38143 * 119.31793 * 359.72534 * 25 24 23 27 27 N 1.31879 * 120.85683 * 359.97438 * 26 25 24 28 28 N 1.34925 * 123.90889 * 16.28556 * 7 6 5 29 29 H 1.09006 * 109.46954 * 188.47124 * 1 2 3 30 30 H 1.09003 * 109.47317 * 308.46569 * 1 2 3 31 31 H 1.08996 * 109.47247 * 68.47663 * 1 2 3 32 32 H 1.08996 * 109.48133 * 69.97615 * 4 2 1 33 33 H 1.09004 * 109.47914 * 309.95393 * 4 2 1 34 34 H 1.08993 * 109.51148 * 309.43162 * 5 4 2 35 35 H 1.08995 * 109.55116 * 189.30558 * 5 4 2 36 36 H 1.08998 * 109.70331 * 191.45495 * 6 5 4 37 37 H 1.08997 * 109.71044 * 70.82958 * 6 5 4 38 38 H 1.07991 * 126.08897 * 180.02562 * 9 8 7 39 39 H 0.96992 * 120.00321 * 185.03401 * 17 16 14 40 40 H 1.07999 * 120.44617 * 359.97438 * 23 22 13 41 41 H 1.08001 * 120.75127 * 180.28295 * 24 23 22 42 42 H 1.08002 * 120.33728 * 179.75385 * 25 24 23 43 43 H 1.08004 * 119.57191 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8952 1.0269 0.0000 4 6 2.0436 -0.7279 -1.2472 5 6 3.5547 -0.9455 -1.1243 6 6 3.8283 -1.9782 -0.0237 7 6 3.0398 -1.5824 1.2031 8 7 3.2117 -2.0151 2.4230 9 6 2.3247 -1.4367 3.2348 10 6 1.5527 -0.5939 2.4797 11 6 0.4508 0.2500 2.9510 12 8 0.2946 1.3634 2.4848 13 7 -0.3895 -0.2069 3.9005 14 6 -0.6259 0.5413 5.0237 15 1 -1.5052 0.3541 5.6221 16 6 0.2629 1.5447 5.3898 17 7 1.4445 1.6161 4.8194 18 14 -0.2222 2.7922 6.6928 19 1 -0.3961 2.1036 7.9970 20 1 0.8422 3.8207 6.8140 21 1 -1.4982 3.4441 6.3032 22 6 -1.0178 -1.4399 3.7400 23 6 -1.9581 -1.8612 4.6744 24 6 -2.5789 -3.0853 4.4995 25 6 -2.2281 -3.8544 3.3981 26 6 -1.2813 -3.3762 2.5131 27 7 -0.7104 -2.2026 2.7022 28 7 2.0174 -0.7021 1.1892 29 1 -0.3633 -1.0165 0.1514 30 1 -0.3634 0.6393 0.8047 31 1 -0.3633 0.3770 -0.9560 32 1 1.8339 -0.1261 -2.1314 33 1 1.5436 -1.6923 -1.3369 34 1 4.0385 -0.0031 -0.8677 35 1 3.9489 -1.3108 -2.0725 36 1 4.8925 -1.9912 0.2117 37 1 3.5136 -2.9661 -0.3602 38 1 2.2319 -1.6034 4.2977 39 1 2.0921 2.2701 5.1255 40 1 -2.2033 -1.2393 5.5226 41 1 -3.3162 -3.4366 5.2061 42 1 -2.6910 -4.8164 3.2347 43 1 -1.0057 -3.9709 1.6547 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892473072.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:47 Heat of formation + Delta-G solvation = 83.858915 kcal Electronic energy + Delta-G solvation = -29236.938198 eV Core-core repulsion = 25476.918530 eV Total energy + Delta-G solvation = -3760.019668 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.70083 -39.72432 -38.01818 -36.64243 -34.85121 -33.21794 -32.35036 -31.53664 -30.10270 -29.20878 -28.59572 -26.83966 -25.36299 -23.36269 -22.46483 -22.32339 -21.82798 -21.14475 -19.57675 -18.49292 -17.74403 -17.26266 -15.93411 -15.61106 -15.13536 -15.04215 -14.77008 -14.42958 -14.33979 -14.15064 -14.02951 -13.81803 -13.56940 -13.12030 -12.94426 -12.83601 -12.37987 -12.28207 -11.86424 -11.82407 -11.54859 -11.31759 -11.20893 -11.17383 -11.01449 -10.99490 -10.65950 -10.52544 -10.28950 -10.13885 -9.57546 -9.14735 -9.03153 -8.85558 -8.74178 -8.46246 -7.39551 -7.25128 -6.61150 -4.10966 1.94699 2.11010 2.45631 3.10669 3.14431 3.17394 3.25048 3.63858 3.91177 4.15018 4.48084 4.59948 4.60882 4.71921 4.79594 4.89560 5.10061 5.17822 5.38378 5.43946 5.48814 5.50895 5.61642 5.73685 5.78078 5.85176 5.87386 5.93500 5.99369 6.03298 6.11121 6.14785 6.31656 6.34624 6.51321 6.54147 6.68933 6.78815 6.93244 7.01561 7.25458 7.40464 7.50657 7.74705 7.88656 8.31860 8.68431 8.78298 8.90350 9.07573 9.56726 10.49181 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.011214 B = 0.006321 C = 0.004798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2496.283065 B = 4428.700179 C = 5834.574440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.139 3.861 3 H 0.087 0.913 4 C -0.128 4.128 5 C -0.125 4.125 6 C -0.026 4.026 7 C 0.192 3.808 8 N -0.497 5.497 9 C 0.034 3.966 10 C 0.000 4.000 11 C 0.657 3.343 12 O -0.498 6.498 13 N -0.410 5.410 14 C -0.337 4.337 15 H 0.107 0.893 16 C 0.043 3.957 17 N -0.850 5.850 18 Si 0.941 3.059 19 H -0.271 1.271 20 H -0.281 1.281 21 H -0.269 1.269 22 C 0.374 3.626 23 C -0.223 4.223 24 C -0.044 4.044 25 C -0.264 4.264 26 C 0.144 3.856 27 N -0.538 5.538 28 N -0.421 5.421 29 H 0.067 0.933 30 H 0.089 0.911 31 H 0.064 0.936 32 H 0.083 0.917 33 H 0.075 0.925 34 H 0.068 0.932 35 H 0.077 0.923 36 H 0.089 0.911 37 H 0.083 0.917 38 H 0.162 0.838 39 H 0.281 0.719 40 H 0.133 0.867 41 H 0.119 0.881 42 H 0.115 0.885 43 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.685 -6.243 -8.585 10.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.036 3.964 3 H 0.105 0.895 4 C -0.166 4.166 5 C -0.163 4.163 6 C -0.065 4.065 7 C -0.069 4.069 8 N -0.217 5.217 9 C -0.117 4.117 10 C -0.118 4.118 11 C 0.448 3.552 12 O -0.371 6.371 13 N -0.118 5.118 14 C -0.462 4.462 15 H 0.125 0.875 16 C -0.166 4.166 17 N -0.485 5.485 18 Si 0.767 3.233 19 H -0.196 1.196 20 H -0.206 1.206 21 H -0.194 1.194 22 C 0.140 3.860 23 C -0.248 4.248 24 C -0.069 4.069 25 C -0.289 4.289 26 C -0.017 4.017 27 N -0.256 5.256 28 N -0.105 5.105 29 H 0.087 0.913 30 H 0.107 0.893 31 H 0.083 0.917 32 H 0.101 0.899 33 H 0.093 0.907 34 H 0.087 0.913 35 H 0.096 0.904 36 H 0.107 0.893 37 H 0.102 0.898 38 H 0.180 0.820 39 H 0.093 0.907 40 H 0.151 0.849 41 H 0.137 0.863 42 H 0.133 0.867 43 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 0.662 -5.356 -9.344 10.791 hybrid contribution -1.302 0.836 1.244 1.985 sum -0.640 -4.520 -8.101 9.298 Atomic orbital electron populations 1.22391 0.93010 1.04298 1.03763 1.21426 0.96188 0.96025 0.82763 0.89516 1.21979 0.96242 1.01649 0.96717 1.21686 0.95916 0.99839 0.98872 1.20081 0.99020 0.98951 0.88480 1.22999 0.93012 0.95366 0.95515 1.69745 1.25760 1.26430 0.99727 1.22169 0.94807 0.95862 0.98895 1.20783 1.02132 1.04962 0.83886 1.15992 0.79137 0.83663 0.76368 1.90542 1.71416 1.21706 1.53462 1.40794 1.39131 1.13158 1.18672 1.19515 1.09920 1.14852 1.01938 0.87546 1.25346 0.94307 0.98396 0.98544 1.69441 1.04349 1.34266 1.40401 0.85755 0.78603 0.79563 0.79396 1.19610 1.20606 1.19415 1.18616 0.91972 0.84954 0.90457 1.21355 1.02228 0.98778 1.02472 1.21143 0.96604 0.93213 0.95989 1.21494 1.05545 1.02301 0.99512 1.22116 0.91459 0.91127 0.97005 1.67211 1.28701 1.06976 1.22760 1.45120 1.25730 1.32709 1.06942 0.91348 0.89287 0.91693 0.89876 0.90666 0.91295 0.90415 0.89304 0.89844 0.82032 0.90736 0.84920 0.86264 0.86668 0.84488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.12 8.60 37.16 0.32 -2.80 16 2 C 0.14 2.36 3.35 -67.82 -0.23 2.13 16 3 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 4 C -0.13 -1.55 5.25 -26.51 -0.14 -1.69 16 5 C -0.13 -1.39 5.96 -26.45 -0.16 -1.54 16 6 C -0.03 -0.35 6.33 -27.48 -0.17 -0.53 16 7 C 0.19 3.69 7.64 -155.26 -1.19 2.50 16 8 N -0.50 -10.98 11.19 -10.31 -0.12 -11.10 16 9 C 0.03 0.81 11.74 -17.31 -0.20 0.61 16 10 C 0.00 0.00 4.88 -82.37 -0.40 -0.40 16 11 C 0.66 17.04 2.87 -12.90 -0.04 17.00 16 12 O -0.50 -13.98 13.89 5.18 0.07 -13.91 16 13 N -0.41 -10.46 2.77 -62.12 -0.17 -10.63 16 14 C -0.34 -8.67 9.08 -14.98 -0.14 -8.81 16 15 H 0.11 2.52 5.93 -52.49 -0.31 2.21 16 16 C 0.04 1.11 5.01 -17.47 -0.09 1.02 16 17 N -0.85 -23.38 10.80 55.50 0.60 -22.78 16 18 Si 0.94 20.14 29.57 -169.99 -5.03 15.11 16 19 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 20 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 21 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 22 C 0.37 8.54 7.16 -154.72 -1.11 7.43 16 23 C -0.22 -4.45 9.32 -39.21 -0.37 -4.82 16 24 C -0.04 -0.73 10.17 -39.31 -0.40 -1.13 16 25 C -0.26 -4.22 10.11 -39.39 -0.40 -4.62 16 26 C 0.14 2.55 11.18 -17.57 -0.20 2.36 16 27 N -0.54 -11.46 8.28 -12.36 -0.10 -11.57 16 28 N -0.42 -8.57 2.99 -102.73 -0.31 -8.88 16 29 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 30 H 0.09 1.94 4.57 -51.93 -0.24 1.71 16 31 H 0.06 0.92 8.13 -51.93 -0.42 0.50 16 32 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.07 0.91 8.09 -51.93 -0.42 0.49 16 34 H 0.07 0.81 8.12 -51.93 -0.42 0.39 16 35 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 37 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 38 H 0.16 4.03 8.06 -52.49 -0.42 3.61 16 39 H 0.28 7.43 8.32 -40.82 -0.34 7.09 16 40 H 0.13 2.58 6.06 -52.49 -0.32 2.26 16 41 H 0.12 1.58 8.06 -52.49 -0.42 1.16 16 42 H 0.12 1.49 8.06 -52.49 -0.42 1.06 16 43 H 0.14 2.06 8.06 -52.48 -0.42 1.63 16 LS Contribution 349.76 15.07 5.27 5.27 Total: -1.00 -31.82 349.76 -10.17 -41.99 By element: Atomic # 1 Polarization: 15.28 SS G_CDS: -5.49 Total: 9.79 kcal Atomic # 6 Polarization: 11.60 SS G_CDS: -4.90 Total: 6.70 kcal Atomic # 7 Polarization: -64.86 SS G_CDS: -0.10 Total: -64.95 kcal Atomic # 8 Polarization: -13.98 SS G_CDS: 0.07 Total: -13.91 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.03 Total: 15.11 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.82 -10.17 -41.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892473072.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.848 kcal (2) G-P(sol) polarization free energy of solvation -31.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.989 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds