Wall clock time and date at job start Tue Mar 31 2020 14:33:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.57874 * 2 1 4 4 C 1.53265 * 109.57934 * 239.73185 * 2 1 3 5 5 C 1.53166 * 109.43940 * 189.96374 * 4 2 1 6 6 C 1.53382 * 109.22268 * 69.35804 * 5 4 2 7 7 C 1.51119 * 108.24527 * 311.13712 * 6 5 4 8 8 N 1.30571 * 127.08491 * 196.03184 * 7 6 5 9 9 C 1.33430 * 109.70666 * 179.97438 * 8 7 6 10 10 C 1.36983 * 107.82111 * 0.02562 * 9 8 7 11 11 C 1.46577 * 126.92088 * 180.02562 * 10 9 8 12 12 O 1.21711 * 120.00003 * 142.04880 * 11 10 9 13 13 N 1.34776 * 120.00001 * 322.04366 * 11 10 9 14 14 C 1.37006 * 119.99857 * 127.60663 * 13 11 10 15 15 H 1.07997 * 120.00278 * 160.45040 * 14 13 11 16 16 C 1.38950 * 120.00111 * 340.71957 * 14 13 11 17 17 N 1.31401 * 119.99918 * 347.18961 * 16 14 13 18 18 Si 1.86797 * 119.99974 * 167.18319 * 16 14 13 19 19 H 1.48504 * 109.46995 * 65.00784 * 18 16 14 20 20 H 1.48506 * 109.47099 * 185.00664 * 18 16 14 21 21 H 1.48491 * 109.47357 * 305.00607 * 18 16 14 22 22 C 1.39313 * 120.00247 * 307.60389 * 13 11 10 23 23 C 1.39099 * 119.70267 * 184.72430 * 22 13 11 24 24 C 1.38368 * 119.09824 * 179.70952 * 23 22 13 25 25 C 1.38837 * 118.49090 * 0.55957 * 24 23 22 26 26 C 1.38143 * 119.31793 * 359.72534 * 25 24 23 27 27 N 1.31879 * 120.85683 * 359.97438 * 26 25 24 28 28 N 1.34925 * 123.90889 * 16.28556 * 7 6 5 29 29 H 1.09006 * 109.46954 * 188.47124 * 1 2 3 30 30 H 1.09003 * 109.47317 * 308.46569 * 1 2 3 31 31 H 1.08996 * 109.47247 * 68.47663 * 1 2 3 32 32 H 1.08996 * 109.48133 * 69.97615 * 4 2 1 33 33 H 1.09004 * 109.47914 * 309.95393 * 4 2 1 34 34 H 1.08993 * 109.51148 * 309.43162 * 5 4 2 35 35 H 1.08995 * 109.55116 * 189.30558 * 5 4 2 36 36 H 1.08998 * 109.70331 * 191.45495 * 6 5 4 37 37 H 1.08997 * 109.71044 * 70.82958 * 6 5 4 38 38 H 1.07991 * 126.08897 * 180.02562 * 9 8 7 39 39 H 0.96992 * 120.00321 * 185.03401 * 17 16 14 40 40 H 1.07999 * 120.44617 * 359.97438 * 23 22 13 41 41 H 1.08001 * 120.75127 * 180.28295 * 24 23 22 42 42 H 1.08002 * 120.33728 * 179.75385 * 25 24 23 43 43 H 1.08004 * 119.57191 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8952 1.0269 0.0000 4 6 2.0436 -0.7279 -1.2472 5 6 3.5547 -0.9455 -1.1243 6 6 3.8283 -1.9782 -0.0237 7 6 3.0398 -1.5824 1.2031 8 7 3.2117 -2.0151 2.4230 9 6 2.3247 -1.4367 3.2348 10 6 1.5527 -0.5939 2.4797 11 6 0.4508 0.2500 2.9510 12 8 0.2946 1.3634 2.4848 13 7 -0.3895 -0.2069 3.9005 14 6 -0.6259 0.5413 5.0237 15 1 -1.5052 0.3541 5.6221 16 6 0.2629 1.5447 5.3898 17 7 1.4445 1.6161 4.8194 18 14 -0.2222 2.7922 6.6928 19 1 -0.3961 2.1036 7.9970 20 1 0.8422 3.8207 6.8140 21 1 -1.4982 3.4441 6.3032 22 6 -1.0178 -1.4399 3.7400 23 6 -1.9581 -1.8612 4.6744 24 6 -2.5789 -3.0853 4.4995 25 6 -2.2281 -3.8544 3.3981 26 6 -1.2813 -3.3762 2.5131 27 7 -0.7104 -2.2026 2.7022 28 7 2.0174 -0.7021 1.1892 29 1 -0.3633 -1.0165 0.1514 30 1 -0.3634 0.6393 0.8047 31 1 -0.3633 0.3770 -0.9560 32 1 1.8339 -0.1261 -2.1314 33 1 1.5436 -1.6923 -1.3369 34 1 4.0385 -0.0031 -0.8677 35 1 3.9489 -1.3108 -2.0725 36 1 4.8925 -1.9912 0.2117 37 1 3.5136 -2.9661 -0.3602 38 1 2.2319 -1.6034 4.2977 39 1 2.0921 2.2701 5.1255 40 1 -2.2033 -1.2393 5.5226 41 1 -3.3162 -3.4366 5.2061 42 1 -2.6910 -4.8164 3.2347 43 1 -1.0057 -3.9709 1.6547 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892473072.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:46 Heat of formation + Delta-G solvation = 65.438261 kcal Electronic energy + Delta-G solvation = -29237.736977 eV Core-core repulsion = 25476.918530 eV Total energy + Delta-G solvation = -3760.818447 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.29196 -41.36290 -39.72934 -37.92945 -36.62359 -34.55336 -34.13702 -33.08639 -31.59762 -30.78333 -30.15868 -28.20531 -27.09295 -24.95147 -23.86185 -23.81091 -23.23366 -22.70519 -21.21367 -19.85767 -19.44408 -18.91018 -17.60239 -17.25783 -16.79291 -16.53022 -16.27278 -16.02559 -15.80077 -15.55470 -15.38916 -15.25911 -15.06723 -14.67609 -14.39372 -14.24851 -13.79831 -13.74480 -13.60723 -13.23663 -13.12015 -12.94309 -12.82682 -12.50592 -12.29385 -12.19420 -11.99496 -11.96340 -11.86539 -11.64051 -11.26548 -10.81111 -10.66115 -10.48249 -10.45905 -10.07711 -9.10065 -8.93620 -8.51341 -6.07116 0.37472 0.63674 0.81699 1.35529 1.43271 1.48947 1.72392 1.95867 2.18855 2.40079 2.76241 2.91274 3.33767 3.39911 3.57623 3.58924 3.69304 3.82161 4.06581 4.16178 4.20936 4.29191 4.36555 4.49039 4.50217 4.53687 4.63857 4.69069 4.74296 4.80556 4.88736 4.97375 5.01213 5.05411 5.09038 5.16284 5.26582 5.31497 5.33138 5.42997 5.56388 5.71221 5.79673 6.06328 6.39611 6.53839 6.83815 7.10480 7.22635 7.27248 7.78541 8.59078 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.011214 B = 0.006321 C = 0.004798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2496.283065 B = 4428.700179 C = 5834.574440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.128 3.872 3 H 0.071 0.929 4 C -0.117 4.117 5 C -0.118 4.118 6 C -0.028 4.028 7 C 0.206 3.794 8 N -0.522 5.522 9 C 0.016 3.984 10 C -0.016 4.016 11 C 0.659 3.341 12 O -0.543 6.543 13 N -0.438 5.438 14 C -0.352 4.352 15 H 0.117 0.883 16 C -0.011 4.011 17 N -0.892 5.892 18 Si 1.007 2.993 19 H -0.251 1.251 20 H -0.286 1.286 21 H -0.267 1.267 22 C 0.344 3.656 23 C -0.238 4.238 24 C -0.037 4.037 25 C -0.235 4.235 26 C 0.125 3.875 27 N -0.556 5.556 28 N -0.425 5.425 29 H 0.057 0.943 30 H 0.042 0.958 31 H 0.100 0.900 32 H 0.117 0.883 33 H 0.082 0.918 34 H 0.060 0.940 35 H 0.124 0.876 36 H 0.103 0.897 37 H 0.109 0.891 38 H 0.135 0.865 39 H 0.274 0.726 40 H 0.130 0.870 41 H 0.163 0.837 42 H 0.162 0.838 43 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.586 -9.015 -10.803 14.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.026 3.974 3 H 0.089 0.911 4 C -0.155 4.155 5 C -0.156 4.156 6 C -0.066 4.066 7 C -0.056 4.056 8 N -0.242 5.242 9 C -0.135 4.135 10 C -0.134 4.134 11 C 0.453 3.547 12 O -0.420 6.420 13 N -0.149 5.149 14 C -0.477 4.477 15 H 0.134 0.866 16 C -0.214 4.214 17 N -0.528 5.528 18 Si 0.829 3.171 19 H -0.175 1.175 20 H -0.211 1.211 21 H -0.192 1.192 22 C 0.113 3.887 23 C -0.263 4.263 24 C -0.062 4.062 25 C -0.257 4.257 26 C -0.035 4.035 27 N -0.274 5.274 28 N -0.108 5.108 29 H 0.076 0.924 30 H 0.060 0.940 31 H 0.118 0.882 32 H 0.135 0.865 33 H 0.101 0.899 34 H 0.079 0.921 35 H 0.142 0.858 36 H 0.121 0.879 37 H 0.127 0.873 38 H 0.153 0.847 39 H 0.084 0.916 40 H 0.148 0.852 41 H 0.180 0.820 42 H 0.180 0.820 43 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -0.292 -8.210 -11.562 14.184 hybrid contribution -1.169 1.380 1.841 2.581 sum -1.461 -6.830 -9.721 11.970 Atomic orbital electron populations 1.22245 0.93754 1.02590 1.03775 1.21780 0.95758 0.96034 0.83793 0.91065 1.22017 0.96897 1.01841 0.94725 1.21724 0.95036 0.98883 0.99917 1.20478 0.98859 1.00890 0.86412 1.24270 0.91865 0.93092 0.96375 1.69723 1.25975 1.27580 1.00918 1.21846 0.96250 0.97183 0.98189 1.20561 1.02095 1.05140 0.85650 1.16179 0.79335 0.83274 0.75941 1.90479 1.72720 1.23621 1.55188 1.40860 1.40608 1.14712 1.18677 1.19909 1.10204 1.15396 1.02214 0.86585 1.26333 0.94085 1.00115 1.00910 1.69599 1.05475 1.35154 1.42600 0.84782 0.77794 0.76980 0.77590 1.17536 1.21116 1.19229 1.18973 0.92590 0.85169 0.91924 1.21563 1.02234 1.00429 1.02055 1.21647 0.96333 0.91433 0.96802 1.22049 1.03032 1.03244 0.97416 1.22800 0.91821 0.90285 0.98569 1.67185 1.29453 1.08177 1.22548 1.45398 1.25799 1.32900 1.06685 0.92359 0.93957 0.88172 0.86459 0.89908 0.92126 0.85788 0.87870 0.87311 0.84726 0.91603 0.85228 0.81974 0.82024 0.81592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.97 8.60 71.98 0.62 -5.35 16 2 C 0.13 4.34 3.35 45.09 0.15 4.49 16 3 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 4 C -0.12 -2.43 5.25 30.74 0.16 -2.27 16 5 C -0.12 -2.12 5.96 30.78 0.18 -1.94 16 6 C -0.03 -0.66 6.33 30.11 0.19 -0.47 16 7 C 0.21 7.86 7.64 138.28 1.06 8.92 16 8 N -0.52 -23.76 11.19 -186.53 -2.09 -25.85 16 9 C 0.02 0.83 11.74 84.16 0.99 1.82 16 10 C -0.02 -0.81 4.88 40.12 0.20 -0.62 16 11 C 0.66 36.80 2.87 86.42 0.25 37.04 16 12 O -0.54 -33.14 13.89 -4.38 -0.06 -33.20 16 13 N -0.44 -23.87 2.77 -468.66 -1.30 -25.17 16 14 C -0.35 -19.28 9.08 84.06 0.76 -18.52 16 15 H 0.12 5.81 5.93 -2.91 -0.02 5.79 16 16 C -0.01 -0.63 5.01 84.93 0.43 -0.20 16 17 N -0.89 -52.98 10.80 21.66 0.23 -52.75 16 18 Si 1.01 43.46 29.57 68.60 2.03 45.49 16 19 H -0.25 -9.90 7.11 99.48 0.71 -9.20 16 20 H -0.29 -12.37 7.11 99.48 0.71 -11.67 16 21 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 22 C 0.34 16.34 7.16 132.95 0.95 17.29 16 23 C -0.24 -9.52 9.32 22.51 0.21 -9.31 16 24 C -0.04 -1.10 10.17 22.44 0.23 -0.87 16 25 C -0.23 -6.53 10.11 22.39 0.23 -6.31 16 26 C 0.12 4.17 11.18 84.66 0.95 5.12 16 27 N -0.56 -24.02 8.28 -193.00 -1.60 -25.62 16 28 N -0.42 -17.73 2.99 -478.91 -1.43 -19.16 16 29 H 0.06 2.16 8.14 -2.38 -0.02 2.14 16 30 H 0.04 1.96 4.57 -2.39 -0.01 1.95 16 31 H 0.10 2.74 8.13 -2.39 -0.02 2.72 16 32 H 0.12 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.08 1.65 8.09 -2.38 -0.02 1.63 16 34 H 0.06 1.23 8.12 -2.39 -0.02 1.21 16 35 H 0.12 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.10 2.21 8.14 -2.39 -0.02 2.19 16 37 H 0.11 2.11 8.14 -2.39 -0.02 2.09 16 38 H 0.14 7.44 8.06 -2.92 -0.02 7.41 16 39 H 0.27 15.69 8.32 -92.71 -0.77 14.91 16 40 H 0.13 5.15 6.06 -2.91 -0.02 5.13 16 41 H 0.16 3.51 8.06 -2.91 -0.02 3.49 16 42 H 0.16 3.10 8.06 -2.91 -0.02 3.08 16 43 H 0.17 4.46 8.06 -2.91 -0.02 4.44 16 Total: -1.00 -79.58 349.76 4.36 -75.22 By element: Atomic # 1 Polarization: 31.18 SS G_CDS: 1.04 Total: 32.22 kcal Atomic # 6 Polarization: 21.28 SS G_CDS: 7.54 Total: 28.82 kcal Atomic # 7 Polarization: -142.37 SS G_CDS: -6.18 Total: -148.55 kcal Atomic # 8 Polarization: -33.14 SS G_CDS: -0.06 Total: -33.20 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Total: -79.58 4.36 -75.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892473072.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.654 kcal (2) G-P(sol) polarization free energy of solvation -79.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.216 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds