Wall clock time and date at job start Tue Mar 31 2020 14:33:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08994 * 109.57321 * 2 1 4 4 C 1.53260 * 109.57984 * 120.40719 * 2 1 3 5 5 C 1.53138 * 109.45595 * 170.00048 * 4 2 1 6 6 C 1.53376 * 109.23828 * 290.66458 * 5 4 2 7 7 C 1.51116 * 108.23770 * 48.86979 * 6 5 4 8 8 N 1.30578 * 127.08463 * 163.88067 * 7 6 5 9 9 C 1.33423 * 109.70233 * 180.08735 * 8 7 6 10 10 C 1.36977 * 107.83013 * 359.97438 * 9 8 7 11 11 C 1.46580 * 126.92576 * 179.97438 * 10 9 8 12 12 O 1.21704 * 120.00124 * 199.90968 * 11 10 9 13 13 N 1.34777 * 119.99867 * 19.91304 * 11 10 9 14 14 C 1.37007 * 120.00151 * 8.01364 * 13 11 10 15 15 H 1.08002 * 119.99947 * 35.04735 * 14 13 11 16 16 C 1.38938 * 120.00178 * 215.05325 * 14 13 11 17 17 N 1.31396 * 120.00083 * 9.56312 * 16 14 13 18 18 Si 1.86802 * 120.00147 * 189.56303 * 16 14 13 19 19 H 1.48492 * 109.47188 * 64.99440 * 18 16 14 20 20 H 1.48501 * 109.47168 * 184.99363 * 18 16 14 21 21 H 1.48504 * 109.47177 * 304.99415 * 18 16 14 22 22 C 1.39308 * 120.00079 * 188.00971 * 13 11 10 23 23 C 1.39098 * 119.69976 * 34.33618 * 22 13 11 24 24 C 1.38365 * 119.10142 * 179.97438 * 23 22 13 25 25 C 1.38841 * 118.49272 * 359.97438 * 24 23 22 26 26 C 1.38148 * 119.31398 * 359.97438 * 25 24 23 27 27 N 1.31877 * 120.85611 * 359.75078 * 26 25 24 28 28 N 1.34925 * 123.90886 * 343.94748 * 7 6 5 29 29 H 1.09001 * 109.46824 * 152.37454 * 1 2 3 30 30 H 1.08994 * 109.46577 * 272.36565 * 1 2 3 31 31 H 1.08994 * 109.46804 * 32.37026 * 1 2 3 32 32 H 1.08994 * 109.47380 * 290.00174 * 4 2 1 33 33 H 1.08998 * 109.47692 * 50.02172 * 4 2 1 34 34 H 1.09000 * 109.51797 * 170.73070 * 5 4 2 35 35 H 1.09003 * 109.50202 * 50.59178 * 5 4 2 36 36 H 1.09002 * 109.70523 * 289.18786 * 6 5 4 37 37 H 1.08998 * 109.71487 * 168.56111 * 6 5 4 38 38 H 1.08001 * 126.08353 * 180.02562 * 9 8 7 39 39 H 0.97002 * 120.00167 * 180.02562 * 17 16 14 40 40 H 1.08000 * 120.44969 * 359.94747 * 23 22 13 41 41 H 1.08004 * 120.75480 * 179.97438 * 24 23 22 42 42 H 1.07999 * 120.33773 * 179.97438 * 25 24 23 43 43 H 1.08000 * 119.57149 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8952 1.0270 0.0000 4 6 2.0437 -0.7309 1.2454 5 6 3.5544 -0.9491 1.1219 6 6 3.8277 -1.9792 0.0189 7 6 3.0397 -1.5796 -1.2071 8 7 3.2127 -2.0080 -2.4284 9 6 2.3266 -1.4263 -3.2388 10 6 1.5542 -0.5859 -2.4816 11 6 0.4531 0.2601 -2.9509 12 8 0.0878 1.2096 -2.2829 13 7 -0.1549 -0.0134 -4.1223 14 6 0.1410 -1.1703 -4.7940 15 1 0.3585 -2.0737 -4.2436 16 6 0.1613 -1.1813 -6.1831 17 7 0.0840 -0.0519 -6.8503 18 14 0.2985 -2.8016 -7.1025 19 1 -0.9149 -3.6190 -6.8488 20 1 0.4208 -2.5359 -8.5584 21 1 1.4989 -3.5381 -6.6312 22 6 -1.0843 0.8801 -4.6500 23 6 -0.9095 2.2473 -4.4623 24 6 -1.8398 3.1237 -4.9923 25 6 -2.9171 2.6008 -5.6950 26 6 -3.0273 1.2318 -5.8438 27 7 -2.1221 0.4208 -5.3321 28 7 2.0208 -0.6953 -1.1918 29 1 -0.3633 -0.9105 -0.4765 30 1 -0.3632 0.0424 1.0268 31 1 -0.3633 0.8679 -0.5502 32 1 1.8343 -0.1310 2.1309 33 1 1.5434 -1.6953 1.3329 34 1 3.9477 -1.3174 2.0694 35 1 4.0387 -0.0063 0.8678 36 1 3.5121 -2.9677 0.3527 37 1 4.8919 -1.9924 -0.2163 38 1 2.2343 -1.5897 -4.3024 39 1 0.0979 -0.0596 -7.8202 40 1 -0.0594 2.6196 -3.9100 41 1 -1.7305 4.1903 -4.8623 42 1 -3.6611 3.2577 -6.1209 43 1 -3.8634 0.8207 -6.3900 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892473073.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:50 Heat of formation + Delta-G solvation = 82.465494 kcal Electronic energy + Delta-G solvation = -28701.047780 eV Core-core repulsion = 24940.967689 eV Total energy + Delta-G solvation = -3760.080091 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.92890 -39.73453 -37.83043 -36.83689 -35.09465 -33.35754 -31.84750 -31.30718 -30.29761 -29.95645 -28.32732 -26.70891 -25.33805 -23.41188 -22.56008 -22.38565 -21.77830 -21.12858 -19.52482 -18.73395 -18.09456 -16.72125 -15.78725 -15.56056 -15.30478 -15.20041 -15.07316 -14.54863 -14.40233 -14.29103 -13.96949 -13.80196 -13.40279 -13.08143 -12.97838 -12.72990 -12.44366 -12.21673 -11.96790 -11.90587 -11.60896 -11.44846 -11.24626 -11.13140 -11.08584 -10.99588 -10.81611 -10.48572 -10.42078 -9.67242 -9.40819 -9.08808 -9.05565 -8.78078 -8.61636 -8.26146 -7.70654 -7.26395 -6.44387 -4.20614 1.85773 2.32153 2.43451 3.01111 3.18688 3.22507 3.25614 3.51056 3.97393 4.11863 4.32987 4.46130 4.59892 4.68105 4.76136 4.82675 5.25421 5.27689 5.32647 5.39759 5.50951 5.61465 5.62151 5.64603 5.68987 5.73664 5.83289 5.93973 5.97448 6.01782 6.03554 6.20901 6.24904 6.32364 6.41433 6.65930 6.75028 6.81643 6.96703 7.11179 7.30376 7.38178 7.40442 7.68991 7.79867 8.23833 8.58953 8.81368 8.91718 9.42126 9.53916 10.56955 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.013569 B = 0.005315 C = 0.004054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2063.104996 B = 5266.796813 C = 6904.867828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.140 3.860 3 H 0.089 0.911 4 C -0.131 4.131 5 C -0.126 4.126 6 C -0.029 4.029 7 C 0.201 3.799 8 N -0.503 5.503 9 C 0.046 3.954 10 C -0.047 4.047 11 C 0.553 3.447 12 O -0.578 6.578 13 N -0.363 5.363 14 C -0.354 4.354 15 H 0.104 0.896 16 C 0.068 3.932 17 N -0.844 5.844 18 Si 0.923 3.077 19 H -0.269 1.269 20 H -0.283 1.283 21 H -0.266 1.266 22 C 0.421 3.579 23 C -0.175 4.175 24 C -0.071 4.071 25 C -0.229 4.229 26 C 0.118 3.882 27 N -0.473 5.473 28 N -0.426 5.426 29 H 0.055 0.945 30 H 0.059 0.941 31 H 0.111 0.889 32 H 0.085 0.915 33 H 0.074 0.926 34 H 0.079 0.921 35 H 0.069 0.931 36 H 0.086 0.914 37 H 0.092 0.908 38 H 0.199 0.801 39 H 0.275 0.725 40 H 0.128 0.872 41 H 0.117 0.883 42 H 0.115 0.885 43 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.034 0.743 10.543 10.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.038 3.962 3 H 0.107 0.893 4 C -0.169 4.169 5 C -0.164 4.164 6 C -0.068 4.068 7 C -0.061 4.061 8 N -0.223 5.223 9 C -0.106 4.106 10 C -0.163 4.163 11 C 0.345 3.655 12 O -0.464 6.464 13 N -0.073 5.073 14 C -0.481 4.481 15 H 0.121 0.879 16 C -0.143 4.143 17 N -0.476 5.476 18 Si 0.748 3.252 19 H -0.195 1.195 20 H -0.208 1.208 21 H -0.190 1.190 22 C 0.192 3.808 23 C -0.198 4.198 24 C -0.097 4.097 25 C -0.251 4.251 26 C -0.041 4.041 27 N -0.186 5.186 28 N -0.109 5.109 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.129 0.871 32 H 0.103 0.897 33 H 0.092 0.908 34 H 0.097 0.903 35 H 0.088 0.912 36 H 0.104 0.896 37 H 0.110 0.890 38 H 0.215 0.785 39 H 0.085 0.915 40 H 0.146 0.854 41 H 0.135 0.865 42 H 0.133 0.867 43 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 2.335 -0.121 10.473 10.731 hybrid contribution -0.557 0.732 -0.548 1.071 sum 1.778 0.612 9.925 10.101 Atomic orbital electron populations 1.22577 0.92580 1.05967 1.02285 1.21475 0.96503 0.96024 0.82225 0.89289 1.22036 0.96235 1.01683 0.96917 1.21696 0.95949 0.99817 0.98922 1.20145 0.99205 0.99146 0.88345 1.23237 0.92647 0.94280 0.95885 1.69969 1.25842 1.26763 0.99677 1.23563 0.92077 0.94293 1.00674 1.20414 1.03731 1.07877 0.84261 1.16748 0.81647 0.84209 0.82857 1.90520 1.66981 1.31912 1.56968 1.40622 1.29750 1.18750 1.18186 1.19538 1.51147 0.87858 0.89535 0.87892 1.25292 0.93936 0.98193 0.96844 1.69714 1.43137 1.26137 1.08657 0.86052 0.79461 0.81462 0.78194 1.19459 1.20796 1.19044 1.18005 0.86524 0.86579 0.89643 1.21622 1.01374 0.92847 1.03953 1.21109 0.93960 0.98839 0.95773 1.21671 1.00938 0.96738 1.05713 1.22193 0.95977 0.89751 0.96224 1.67026 1.01685 1.39878 1.10036 1.45251 1.25929 1.32732 1.07035 0.92597 0.92180 0.87082 0.89660 0.90771 0.90284 0.91212 0.89606 0.88969 0.78458 0.91459 0.85394 0.86453 0.86681 0.84484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.84 8.14 37.16 0.30 -2.53 16 2 C 0.14 2.12 3.27 -67.82 -0.22 1.89 16 3 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 4 C -0.13 -1.41 5.10 -26.53 -0.14 -1.54 16 5 C -0.13 -1.22 5.96 -26.46 -0.16 -1.38 16 6 C -0.03 -0.35 6.33 -27.48 -0.17 -0.53 16 7 C 0.20 3.52 7.64 -155.25 -1.19 2.33 16 8 N -0.50 -10.29 11.19 -10.31 -0.12 -10.41 16 9 C 0.05 1.02 9.82 -17.32 -0.17 0.85 16 10 C -0.05 -1.04 6.22 -82.37 -0.51 -1.55 16 11 C 0.55 13.23 6.68 -12.90 -0.09 13.15 16 12 O -0.58 -13.71 10.78 5.19 0.06 -13.65 16 13 N -0.36 -9.23 2.79 -62.12 -0.17 -9.40 16 14 C -0.35 -8.99 6.37 -14.98 -0.10 -9.08 16 15 H 0.10 2.57 6.23 -52.49 -0.33 2.24 16 16 C 0.07 1.71 4.83 -17.48 -0.08 1.62 16 17 N -0.84 -22.28 11.30 55.49 0.63 -21.65 16 18 Si 0.92 19.92 29.56 -169.99 -5.03 14.90 16 19 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 20 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 21 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 22 C 0.42 10.59 5.05 -154.73 -0.78 9.81 16 23 C -0.17 -4.04 8.67 -39.22 -0.34 -4.38 16 24 C -0.07 -1.38 10.17 -39.31 -0.40 -1.78 16 25 C -0.23 -4.25 10.11 -39.39 -0.40 -4.65 16 26 C 0.12 2.44 11.18 -17.57 -0.20 2.25 16 27 N -0.47 -11.66 8.58 -12.36 -0.11 -11.76 16 28 N -0.43 -7.88 2.96 -102.72 -0.30 -8.18 16 29 H 0.05 1.01 7.93 -51.93 -0.41 0.60 16 30 H 0.06 0.76 7.88 -51.93 -0.41 0.35 16 31 H 0.11 2.11 5.07 -51.93 -0.26 1.84 16 32 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.07 0.81 8.09 -51.93 -0.42 0.39 16 34 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.07 0.70 8.12 -51.93 -0.42 0.28 16 36 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.20 4.53 5.98 -52.49 -0.31 4.21 16 39 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 40 H 0.13 3.01 6.57 -52.49 -0.34 2.66 16 41 H 0.12 1.89 8.06 -52.48 -0.42 1.47 16 42 H 0.12 1.71 8.06 -52.49 -0.42 1.29 16 43 H 0.14 2.37 8.06 -52.49 -0.42 1.95 16 LS Contribution 343.08 15.07 5.17 5.17 Total: -1.00 -30.54 343.08 -9.93 -40.47 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: -5.43 Total: 10.04 kcal Atomic # 6 Polarization: 9.11 SS G_CDS: -4.64 Total: 4.48 kcal Atomic # 7 Polarization: -61.33 SS G_CDS: -0.07 Total: -61.40 kcal Atomic # 8 Polarization: -13.71 SS G_CDS: 0.06 Total: -13.65 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -5.03 Total: 14.90 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -30.54 -9.93 -40.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892473073.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.937 kcal (2) G-P(sol) polarization free energy of solvation -30.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.472 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds