Wall clock time and date at job start Tue Mar 31 2020 15:01:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.46920 * 2 1 4 4 C 1.53000 * 109.47184 * 239.99814 * 2 1 3 5 5 C 1.50705 * 109.47170 * 174.99865 * 4 2 1 6 6 C 1.38668 * 120.41758 * 89.99902 * 5 4 2 7 7 C 1.38628 * 118.42270 * 180.02562 * 6 5 4 8 8 C 1.38233 * 119.15812 * 359.97438 * 7 6 5 9 9 N 1.31856 * 120.76293 * 0.02562 * 8 7 6 10 10 C 1.31883 * 121.72549 * 359.69828 * 9 8 7 11 11 N 1.46498 * 109.47421 * 119.99388 * 2 1 3 12 12 C 1.34774 * 120.00216 * 275.28184 * 11 2 1 13 13 O 1.21573 * 120.00090 * 359.72049 * 12 11 2 14 14 N 1.34779 * 119.99822 * 179.72390 * 12 11 2 15 15 C 1.39458 * 119.99815 * 174.98032 * 14 12 11 16 16 C 1.38649 * 119.64703 * 185.35596 * 15 14 12 17 17 C 1.40820 * 118.67440 * 179.97438 * 16 15 14 18 18 C 1.41537 * 120.99668 * 179.97438 * 17 16 15 19 19 H 1.08003 * 120.00399 * 151.73464 * 18 17 16 20 20 C 1.40034 * 120.00247 * 331.72736 * 18 17 16 21 21 N 1.30742 * 120.00086 * 350.15882 * 20 18 17 22 22 Si 1.86803 * 120.00175 * 170.15065 * 20 18 17 23 23 H 1.48499 * 109.46821 * 0.02562 * 22 20 18 24 24 H 1.48497 * 109.47192 * 120.00252 * 22 20 18 25 25 H 1.48498 * 109.47186 * 240.00408 * 22 20 18 26 26 C 1.41161 * 118.00602 * 0.02562 * 17 16 15 27 27 C 1.36595 * 119.12918 * 359.97438 * 26 17 16 28 28 N 1.32072 * 121.25615 * 359.74318 * 27 26 17 29 29 H 1.08996 * 109.46920 * 60.00202 * 1 2 3 30 30 H 1.08999 * 109.47185 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47006 * 300.00245 * 1 2 3 32 32 H 1.09000 * 109.47258 * 294.99892 * 4 2 1 33 33 H 1.09000 * 109.47298 * 55.00340 * 4 2 1 34 34 H 1.08004 * 120.78855 * 359.97438 * 6 5 4 35 35 H 1.07999 * 120.42188 * 180.02562 * 7 6 5 36 36 H 1.08002 * 119.61760 * 179.97438 * 8 7 6 37 37 H 1.08004 * 119.61787 * 180.30856 * 10 9 8 38 38 H 0.97002 * 119.99596 * 94.99553 * 11 2 1 39 39 H 0.97005 * 120.00141 * 354.97180 * 14 12 11 40 40 H 1.07999 * 120.66015 * 0.02562 * 16 15 14 41 41 H 0.96994 * 120.00205 * 179.97438 * 21 20 18 42 42 H 1.08001 * 120.44111 * 179.97438 * 26 17 16 43 43 H 1.07997 * 119.37547 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5420 -0.6149 -1.3127 6 6 4.3400 -1.5796 -0.7165 7 6 5.7167 -1.4406 -0.7997 8 6 6.2446 -0.3529 -1.4699 9 7 5.4550 0.5453 -2.0251 10 6 4.1413 0.4423 -1.9704 11 7 2.0184 -0.6905 1.1962 12 6 2.1418 -0.0194 2.3585 13 8 1.8526 1.1601 2.4131 14 7 2.5858 -0.6561 3.4603 15 6 2.8133 0.0599 4.6353 16 6 3.3748 -0.5793 5.7301 17 6 3.5960 0.1634 6.9059 18 6 4.1658 -0.4397 8.0526 19 1 4.7395 0.1558 8.7473 20 6 3.9855 -1.8086 8.2865 21 7 3.1388 -2.4900 7.5598 22 14 4.9550 -2.6611 9.6366 23 1 5.8391 -1.6754 10.3089 24 1 4.0157 -3.2411 10.6297 25 1 5.7806 -3.7443 9.0447 26 6 3.2314 1.5271 6.9070 27 6 2.6839 2.0699 5.7794 28 7 2.4956 1.3449 4.6917 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.7517 -1.7716 -1.2055 33 1 1.6055 -0.2618 -2.1370 34 1 3.8993 -2.4189 -0.1989 35 1 6.3687 -2.1732 -0.3473 36 1 7.3162 -0.2371 -1.5388 37 1 3.5268 1.1953 -2.4414 38 1 2.2490 -1.6317 1.1527 39 1 2.7471 -1.6123 3.4361 40 1 3.6380 -1.6256 5.6817 41 1 3.0142 -3.4382 7.7216 42 1 3.3832 2.1334 7.7878 43 1 2.4031 3.1127 5.7760 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932162575.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:01:42 Heat of formation + Delta-G solvation = 39.483967 kcal Electronic energy + Delta-G solvation = -26691.036388 eV Core-core repulsion = 22929.092478 eV Total energy + Delta-G solvation = -3761.943910 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.48400 -39.73614 -38.17907 -36.27521 -34.23690 -33.70376 -32.90227 -32.07507 -30.67952 -30.37597 -28.26007 -26.95457 -25.97787 -23.74855 -23.04998 -22.09986 -21.84030 -20.74398 -20.07550 -18.09590 -17.65413 -17.25820 -16.58855 -16.11237 -15.53843 -15.44915 -15.10866 -14.59723 -14.35390 -14.19118 -14.05692 -13.88355 -13.51180 -13.26065 -13.10098 -12.89897 -12.73789 -12.59697 -12.46218 -12.19651 -12.08210 -11.48911 -11.41171 -11.20675 -11.11324 -10.91075 -10.26745 -10.11302 -9.91531 -9.74770 -9.60077 -9.53037 -9.38443 -9.12362 -8.78997 -7.93521 -7.70727 -7.01888 -6.74853 -4.61801 0.95842 1.14365 2.70392 2.79902 3.01635 3.02866 3.07258 3.24133 3.65394 3.85631 3.88901 4.26922 4.48238 4.54348 4.62479 4.71647 4.75996 4.83868 4.85792 5.14709 5.19396 5.37453 5.50534 5.55097 5.62165 5.68339 5.69331 5.86109 5.94526 6.01981 6.11956 6.23661 6.54510 6.55663 6.61976 6.76361 6.81010 6.96069 7.12681 7.29469 7.43286 7.49842 7.83571 7.87769 8.12248 8.40712 8.47207 8.73226 8.77247 9.20434 9.73411 10.11305 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.013665 B = 0.003042 C = 0.002802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2048.531598 B = 9201.576283 C = 9990.388271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.168 3.832 3 H 0.089 0.911 4 C -0.084 4.084 5 C -0.129 4.129 6 C -0.069 4.069 7 C -0.168 4.168 8 C 0.091 3.909 9 N -0.484 5.484 10 C 0.101 3.899 11 N -0.749 5.749 12 C 0.692 3.308 13 O -0.532 6.532 14 N -0.669 5.669 15 C 0.354 3.646 16 C -0.241 4.241 17 C 0.145 3.855 18 C -0.457 4.457 19 H 0.081 0.919 20 C 0.076 3.924 21 N -0.797 5.797 22 Si 0.913 3.087 23 H -0.260 1.260 24 H -0.274 1.274 25 H -0.272 1.272 26 C -0.281 4.281 27 C 0.118 3.882 28 N -0.550 5.550 29 H 0.063 0.937 30 H 0.054 0.946 31 H 0.066 0.934 32 H 0.080 0.920 33 H 0.092 0.908 34 H 0.130 0.870 35 H 0.134 0.866 36 H 0.153 0.847 37 H 0.153 0.847 38 H 0.387 0.613 39 H 0.403 0.597 40 H 0.128 0.872 41 H 0.279 0.721 42 H 0.102 0.898 43 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.144 -4.817 -16.396 17.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.062 3.938 3 H 0.107 0.893 4 C -0.122 4.122 5 C -0.131 4.131 6 C -0.095 4.095 7 C -0.188 4.188 8 C -0.066 4.066 9 N -0.192 5.192 10 C -0.056 4.056 11 N -0.407 5.407 12 C 0.392 3.608 13 O -0.402 6.402 14 N -0.316 5.316 15 C 0.128 3.872 16 C -0.267 4.267 17 C 0.137 3.863 18 C -0.489 4.489 19 H 0.100 0.900 20 C -0.142 4.142 21 N -0.423 5.423 22 Si 0.737 3.263 23 H -0.184 1.184 24 H -0.199 1.199 25 H -0.198 1.198 26 C -0.305 4.305 27 C -0.036 4.036 28 N -0.269 5.269 29 H 0.082 0.918 30 H 0.074 0.926 31 H 0.086 0.914 32 H 0.098 0.902 33 H 0.110 0.890 34 H 0.148 0.852 35 H 0.152 0.848 36 H 0.171 0.829 37 H 0.171 0.829 38 H 0.220 0.780 39 H 0.237 0.763 40 H 0.146 0.854 41 H 0.090 0.910 42 H 0.120 0.880 43 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -0.217 -2.789 -17.621 17.842 hybrid contribution 0.555 -2.685 1.947 3.363 sum 0.338 -5.475 -15.674 16.606 Atomic orbital electron populations 1.22213 0.95235 1.01996 1.02813 1.20678 0.93539 0.97333 0.82201 0.89272 1.20904 0.90456 1.02224 0.98664 1.20816 0.96835 0.96331 0.99076 1.21440 0.93590 0.98170 0.96280 1.22157 0.95965 0.99990 1.00700 1.22749 1.00054 0.90098 0.93651 1.67668 1.05569 1.27605 1.18320 1.22661 0.90905 0.95982 0.96045 1.45287 1.73193 1.13232 1.08957 1.16079 0.79141 0.85554 0.80030 1.91007 1.52603 1.13336 1.83286 1.42561 1.68790 1.10958 1.09307 1.17974 0.95540 0.89455 0.84232 1.21544 1.11223 1.01872 0.92014 1.17571 0.86854 0.90306 0.91603 1.19595 1.29506 0.93250 1.06517 0.90048 1.25924 0.93633 0.97552 0.97051 1.69761 1.27147 1.09344 1.36087 0.86180 0.80078 0.79493 0.80500 1.18366 1.19916 1.19750 1.21713 1.11604 0.97724 0.99460 1.21493 0.95916 0.97664 0.88507 1.67217 1.26132 1.05239 1.28265 0.91837 0.92641 0.91449 0.90181 0.88981 0.85181 0.84791 0.82941 0.82938 0.77997 0.76320 0.85405 0.90966 0.88010 0.86037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.70 9.48 37.16 0.35 -1.35 16 2 C 0.17 1.87 2.56 -67.93 -0.17 1.70 16 3 H 0.09 1.24 7.58 -51.92 -0.39 0.85 16 4 C -0.08 -0.65 4.92 -27.88 -0.14 -0.78 16 5 C -0.13 -1.26 4.96 -104.48 -0.52 -1.78 16 6 C -0.07 -0.65 9.27 -39.28 -0.36 -1.02 16 7 C -0.17 -1.65 10.11 -39.44 -0.40 -2.04 16 8 C 0.09 1.00 11.18 -17.54 -0.20 0.80 16 9 N -0.48 -6.10 10.36 -13.25 -0.14 -6.24 16 10 C 0.10 1.12 10.86 -17.55 -0.19 0.93 16 11 N -0.75 -9.72 4.54 -58.68 -0.27 -9.98 16 12 C 0.69 13.15 8.48 -86.92 -0.74 12.41 16 13 O -0.53 -12.51 14.27 5.30 0.08 -12.43 16 14 N -0.67 -13.14 5.40 -15.86 -0.09 -13.23 16 15 C 0.35 8.67 7.42 -154.68 -1.15 7.52 16 16 C -0.24 -6.11 8.60 -38.45 -0.33 -6.44 16 17 C 0.15 3.83 5.58 -106.55 -0.59 3.24 16 18 C -0.46 -11.78 9.13 -37.65 -0.34 -12.12 16 19 H 0.08 2.02 7.87 -52.48 -0.41 1.60 16 20 C 0.08 1.83 5.30 -17.34 -0.09 1.74 16 21 N -0.80 -19.58 10.83 55.55 0.60 -18.98 16 22 Si 0.91 17.95 29.57 -169.99 -5.03 12.93 16 23 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 24 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 25 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 26 C -0.28 -6.98 9.85 -39.07 -0.38 -7.36 16 27 C 0.12 2.89 11.10 -18.04 -0.20 2.69 16 28 N -0.55 -14.28 7.86 -12.75 -0.10 -14.38 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.08 0.49 8.10 -51.93 -0.42 0.07 16 33 H 0.09 0.55 8.09 -51.93 -0.42 0.13 16 34 H 0.13 0.95 7.64 -52.48 -0.40 0.54 16 35 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 36 H 0.15 1.29 8.06 -52.49 -0.42 0.87 16 37 H 0.15 1.36 8.06 -52.48 -0.42 0.94 16 38 H 0.39 3.86 7.92 -40.82 -0.32 3.54 16 39 H 0.40 6.46 8.72 -40.82 -0.36 6.10 16 40 H 0.13 3.21 6.28 -52.49 -0.33 2.88 16 41 H 0.28 6.20 8.29 -40.82 -0.34 5.86 16 42 H 0.10 2.32 8.06 -52.49 -0.42 1.89 16 43 H 0.12 2.62 8.06 -52.49 -0.42 2.19 16 LS Contribution 368.15 15.07 5.55 5.55 Total: -1.00 -33.92 368.15 -10.42 -44.34 By element: Atomic # 1 Polarization: 19.88 SS G_CDS: -5.57 Total: 14.31 kcal Atomic # 6 Polarization: 3.59 SS G_CDS: -5.46 Total: -1.87 kcal Atomic # 7 Polarization: -62.83 SS G_CDS: 0.01 Total: -62.81 kcal Atomic # 8 Polarization: -12.51 SS G_CDS: 0.08 Total: -12.43 kcal Atomic # 14 Polarization: 17.95 SS G_CDS: -5.03 Total: 12.93 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.92 -10.42 -44.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932162575.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.821 kcal (2) G-P(sol) polarization free energy of solvation -33.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.337 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds