Wall clock time and date at job start Tue Mar 31 2020 14:49:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 110.88588 * 2 1 4 4 C 1.54913 * 111.03598 * 236.10060 * 2 1 3 5 5 N 1.47423 * 104.83143 * 204.90032 * 4 2 1 6 6 C 1.34776 * 125.64465 * 204.17704 * 5 4 2 7 7 O 1.21545 * 120.00717 * 355.09527 * 6 5 4 8 8 C 1.47875 * 119.99741 * 175.10151 * 6 5 4 9 9 C 1.38948 * 121.42562 * 46.36299 * 8 6 5 10 10 N 1.32574 * 120.34275 * 180.02562 * 9 8 6 11 11 N 1.28386 * 123.43185 * 359.97438 * 10 9 8 12 12 C 1.33462 * 121.85229 * 0.02562 * 11 10 9 13 13 C 1.40587 * 121.73497 * 179.97438 * 12 11 10 14 14 C 1.36115 * 119.60868 * 180.02562 * 13 12 11 15 15 C 1.39373 * 121.12793 * 359.97438 * 14 13 12 16 16 C 1.36332 * 120.89154 * 359.97438 * 15 14 13 17 17 C 1.39858 * 119.49974 * 359.80540 * 16 15 14 18 18 C 1.47019 * 108.70577 * 24.12720 * 5 4 2 19 19 C 1.54320 * 107.26845 * 358.94191 * 18 5 4 20 20 H 1.09007 * 110.87631 * 96.24164 * 19 18 5 21 21 N 1.46502 * 110.72131 * 219.44164 * 19 18 5 22 22 C 1.36940 * 120.00043 * 268.52428 * 21 19 18 23 23 H 1.08005 * 119.99954 * 0.02562 * 22 21 19 24 24 C 1.38812 * 119.99804 * 179.97438 * 22 21 19 25 25 N 1.31623 * 119.99628 * 180.02562 * 24 22 21 26 26 Si 1.86796 * 120.00184 * 359.97438 * 24 22 21 27 27 H 1.48503 * 109.46736 * 90.00301 * 26 24 22 28 28 H 1.48500 * 109.47187 * 210.00030 * 26 24 22 29 29 H 1.48502 * 109.47293 * 330.00190 * 26 24 22 30 30 H 1.09002 * 109.47230 * 299.28966 * 1 2 3 31 31 H 1.08994 * 109.47410 * 59.29852 * 1 2 3 32 32 H 1.09007 * 109.46902 * 179.29935 * 1 2 3 33 33 H 1.09002 * 110.36602 * 323.73966 * 4 2 1 34 34 H 1.09002 * 110.36437 * 86.06341 * 4 2 1 35 35 H 1.08006 * 119.82652 * 359.97438 * 9 8 6 36 36 H 1.08000 * 120.19574 * 0.03394 * 13 12 11 37 37 H 1.08004 * 119.43254 * 180.02562 * 14 13 12 38 38 H 1.08008 * 119.55168 * 180.02562 * 15 14 13 39 39 H 1.08002 * 120.25491 * 180.02562 * 16 15 14 40 40 H 1.08997 * 109.88440 * 239.52668 * 18 5 4 41 41 H 1.09002 * 110.00778 * 118.42927 * 18 5 4 42 42 H 0.96996 * 120.00192 * 88.52326 * 21 19 18 43 43 H 0.97003 * 119.99759 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0861 -0.8064 -1.2001 5 7 3.4280 -1.2421 -0.7727 6 6 4.4494 -1.5586 -1.5931 7 8 4.2779 -1.5822 -2.7961 8 6 5.7789 -1.8772 -1.0295 9 6 5.9203 -2.7417 0.0491 10 7 7.1227 -3.0120 0.5376 11 7 8.2068 -2.5120 0.0654 12 6 8.2014 -1.6689 -0.9692 13 6 9.3900 -1.1225 -1.4840 14 6 9.3342 -0.2662 -2.5406 15 6 8.1166 0.0798 -3.1240 16 6 6.9441 -0.4313 -2.6522 17 6 6.9649 -1.3178 -1.5706 18 6 3.4679 -1.2731 0.6966 19 6 2.0862 -0.8076 1.2024 20 1 1.4455 -1.6614 1.4230 21 7 2.2279 0.0500 2.3816 22 6 2.1991 -0.4997 3.6355 23 1 2.0724 -1.5656 3.7550 24 6 2.3338 0.3129 4.7529 25 7 2.3067 -0.2156 5.9580 26 14 2.5551 2.1561 4.5461 27 1 1.2248 2.8160 4.5341 28 1 3.3611 2.6876 5.6744 29 1 3.2551 2.4301 3.2654 30 1 -0.3634 0.5028 0.8963 31 1 -0.3634 0.5247 -0.8836 32 1 -0.3633 -1.0277 -0.0126 33 1 1.4532 -1.6705 -1.4024 34 1 2.1567 -0.1717 -2.0835 35 1 5.0459 -3.1952 0.4923 36 1 10.3419 -1.3807 -1.0438 37 1 10.2491 0.1516 -2.9341 38 1 8.1019 0.7613 -3.9618 39 1 6.0064 -0.1565 -3.1123 40 1 4.2425 -0.5982 1.0608 41 1 3.6671 -2.2872 1.0430 42 1 2.3420 1.0073 2.2743 43 1 2.4012 0.3521 6.7388 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000939199813.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:13 Heat of formation + Delta-G solvation = 70.831838 kcal Electronic energy + Delta-G solvation = -27399.955603 eV Core-core repulsion = 23639.371039 eV Total energy + Delta-G solvation = -3760.584564 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.70267 -39.96031 -38.11624 -37.84940 -34.41044 -34.00581 -32.62387 -31.86640 -31.17547 -30.59034 -28.16002 -27.14433 -25.45731 -24.65946 -23.90153 -22.98395 -21.52777 -20.35672 -19.82098 -18.91206 -18.53539 -17.67479 -17.37072 -16.21547 -16.11601 -15.77063 -15.26168 -15.24520 -14.74379 -14.45560 -14.32125 -14.11076 -13.67741 -13.34377 -13.30235 -12.76273 -12.68913 -12.64188 -12.61919 -12.42470 -12.11182 -11.85223 -11.55114 -11.32284 -11.05554 -10.98201 -10.85079 -10.77047 -10.64459 -10.45420 -10.13826 -9.74221 -9.69710 -9.63353 -9.12038 -8.73700 -8.60758 -7.49782 -5.91302 -3.30374 -0.44765 0.39345 1.34918 2.37275 2.57977 2.81388 3.26924 3.29324 3.36546 3.66132 3.74515 4.05602 4.08894 4.19579 4.45569 4.48121 4.59060 4.69673 4.80021 4.86784 4.87475 4.91052 5.16003 5.29240 5.32685 5.43422 5.46446 5.53829 5.56041 5.62430 5.65348 5.69433 5.85161 5.92110 5.93129 5.99114 6.02058 6.09896 6.20482 6.23589 6.36749 6.37681 6.59615 7.34924 7.80556 7.87436 8.26801 8.41200 9.02271 9.74542 9.91394 11.26061 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.012013 B = 0.003941 C = 0.003428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2330.194844 B = 7103.427613 C = 8166.777131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.119 4.119 3 H 0.082 0.918 4 C 0.115 3.885 5 N -0.601 5.601 6 C 0.577 3.423 7 O -0.533 6.533 8 C -0.097 4.097 9 C 0.050 3.950 10 N -0.215 5.215 11 N -0.190 5.190 12 C 0.060 3.940 13 C -0.075 4.075 14 C -0.100 4.100 15 C -0.091 4.091 16 C -0.099 4.099 17 C -0.028 4.028 18 C 0.063 3.937 19 C 0.184 3.816 20 H 0.082 0.918 21 N -0.734 5.734 22 C -0.257 4.257 23 H 0.094 0.906 24 C 0.014 3.986 25 N -0.925 5.925 26 Si 0.881 3.119 27 H -0.282 1.282 28 H -0.289 1.289 29 H -0.278 1.278 30 H 0.068 0.932 31 H 0.051 0.949 32 H 0.057 0.943 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.182 0.818 36 H 0.146 0.854 37 H 0.138 0.862 38 H 0.136 0.864 39 H 0.145 0.855 40 H 0.074 0.926 41 H 0.070 0.930 42 H 0.364 0.636 43 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.613 0.472 -19.079 20.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.139 4.139 3 H 0.100 0.900 4 C -0.007 4.007 5 N -0.333 5.333 6 C 0.364 3.636 7 O -0.411 6.411 8 C -0.112 4.112 9 C -0.102 4.102 10 N -0.067 5.067 11 N -0.045 5.045 12 C -0.069 4.069 13 C -0.096 4.096 14 C -0.120 4.120 15 C -0.111 4.111 16 C -0.117 4.117 17 C -0.037 4.037 18 C -0.063 4.063 19 C 0.072 3.928 20 H 0.100 0.900 21 N -0.374 5.374 22 C -0.387 4.387 23 H 0.112 0.888 24 C -0.183 4.183 25 N -0.572 5.572 26 Si 0.711 3.289 27 H -0.208 1.208 28 H -0.216 1.216 29 H -0.204 1.204 30 H 0.087 0.913 31 H 0.070 0.930 32 H 0.077 0.923 33 H 0.092 0.908 34 H 0.095 0.905 35 H 0.198 0.802 36 H 0.164 0.836 37 H 0.156 0.844 38 H 0.153 0.847 39 H 0.163 0.837 40 H 0.093 0.907 41 H 0.088 0.912 42 H 0.198 0.802 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 8.338 -0.524 -18.385 20.194 hybrid contribution -0.558 2.063 -0.873 2.309 sum 7.781 1.539 -19.258 20.828 Atomic orbital electron populations 1.21616 0.93312 1.02195 1.02061 1.22721 0.96819 0.99663 0.94681 0.89982 1.22355 0.81936 0.98548 0.97853 1.48449 1.11841 1.64722 1.08308 1.17431 0.82612 0.77838 0.85716 1.90784 1.83481 1.52979 1.13846 1.21088 0.94327 0.98964 0.96865 1.24517 0.98405 0.95123 0.92123 1.73086 0.95142 1.16635 1.21824 1.73634 1.20258 1.04134 1.06484 1.20351 0.93633 0.97540 0.95379 1.20817 0.96758 0.96064 0.95949 1.21070 0.98588 0.96894 0.95486 1.21179 0.91999 0.98521 0.99389 1.21163 1.00237 0.95482 0.94834 1.18595 0.92053 0.96765 0.96262 1.23591 1.03713 1.02007 0.76984 1.21222 0.91449 0.94034 0.86092 0.89989 1.42718 1.87810 1.05041 1.01868 1.19062 1.43758 0.94729 0.81142 0.88841 1.24669 1.01188 0.97389 0.95075 1.69693 1.55836 1.34598 0.97028 0.86616 0.77996 0.87160 0.77088 1.20833 1.21558 1.20422 0.91297 0.92974 0.92347 0.90762 0.90532 0.80157 0.83594 0.84435 0.84653 0.83730 0.90737 0.91181 0.80237 0.92798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.59 9.29 37.16 0.35 -1.24 16 2 C -0.12 -1.59 3.27 -88.47 -0.29 -1.87 16 3 H 0.08 1.14 8.01 -51.93 -0.42 0.72 16 4 C 0.12 1.45 6.36 -2.53 -0.02 1.43 16 5 N -0.60 -8.53 3.33 -171.62 -0.57 -9.10 16 6 C 0.58 8.67 7.01 -12.32 -0.09 8.59 16 7 O -0.53 -8.88 15.68 5.33 0.08 -8.80 16 8 C -0.10 -1.42 5.49 -104.30 -0.57 -1.99 16 9 C 0.05 0.73 9.86 -16.97 -0.17 0.57 16 10 N -0.21 -3.44 11.47 30.73 0.35 -3.09 16 11 N -0.19 -2.94 11.52 32.22 0.37 -2.57 16 12 C 0.06 0.82 6.69 -84.87 -0.57 0.25 16 13 C -0.07 -0.75 10.01 -39.46 -0.39 -1.15 16 14 C -0.10 -0.79 9.94 -39.92 -0.40 -1.19 16 15 C -0.09 -0.80 9.96 -39.85 -0.40 -1.20 16 16 C -0.10 -1.17 9.25 -39.66 -0.37 -1.53 16 17 C -0.03 -0.38 5.77 -106.50 -0.61 -1.00 16 18 C 0.06 0.97 5.39 -3.07 -0.02 0.95 16 19 C 0.18 3.04 3.08 -66.10 -0.20 2.83 16 20 H 0.08 1.37 7.99 -51.92 -0.41 0.95 16 21 N -0.73 -15.46 4.95 -51.65 -0.26 -15.71 16 22 C -0.26 -6.66 10.44 -15.06 -0.16 -6.81 16 23 H 0.09 2.59 8.06 -52.48 -0.42 2.16 16 24 C 0.01 0.38 5.50 -17.43 -0.10 0.29 16 25 N -0.93 -27.76 13.97 55.49 0.78 -26.98 16 26 Si 0.88 20.97 27.73 -169.99 -4.71 16.26 16 27 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 28 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 29 H -0.28 -6.23 6.52 56.52 0.37 -5.87 16 30 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.64 8.13 -51.92 -0.42 0.22 16 33 H 0.07 0.85 8.03 -51.93 -0.42 0.44 16 34 H 0.08 0.93 8.09 -51.93 -0.42 0.51 16 35 H 0.18 2.31 5.91 -52.48 -0.31 2.00 16 36 H 0.15 1.15 8.06 -52.49 -0.42 0.73 16 37 H 0.14 0.63 8.06 -52.48 -0.42 0.21 16 38 H 0.14 0.79 8.06 -52.48 -0.42 0.37 16 39 H 0.15 1.77 6.36 -52.49 -0.33 1.44 16 40 H 0.07 1.29 8.03 -51.93 -0.42 0.87 16 41 H 0.07 1.02 6.03 -51.93 -0.31 0.71 16 42 H 0.36 7.68 5.62 -40.82 -0.23 7.45 16 43 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 355.70 15.07 5.36 5.36 Total: -1.00 -31.96 355.70 -7.99 -39.95 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: -5.40 Total: 7.76 kcal Atomic # 6 Polarization: 0.91 SS G_CDS: -4.00 Total: -3.08 kcal Atomic # 7 Polarization: -58.12 SS G_CDS: 0.67 Total: -57.45 kcal Atomic # 8 Polarization: -8.88 SS G_CDS: 0.08 Total: -8.80 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -4.71 Total: 16.26 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -31.96 -7.99 -39.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939199813.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.786 kcal (2) G-P(sol) polarization free energy of solvation -31.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.954 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds