Wall clock time and date at job start Tue Mar 31 2020 14:58:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09007 * 109.46714 * 2 1 4 4 N 1.46500 * 109.47220 * 119.99573 * 2 1 3 5 5 C 1.34772 * 120.00280 * 275.00432 * 4 2 1 6 6 O 1.21548 * 120.00127 * 359.97438 * 5 4 2 7 7 C 1.47895 * 120.00353 * 179.97438 * 5 4 2 8 8 N 1.32143 * 120.02770 * 359.97438 * 7 5 4 9 9 C 1.31982 * 122.76724 * 180.02562 * 8 7 5 10 10 C 1.37775 * 121.72832 * 0.02562 * 9 8 7 11 11 C 1.40395 * 118.72948 * 359.97438 * 10 9 8 12 12 C 1.40635 * 122.27589 * 180.02562 * 11 10 9 13 13 C 1.36649 * 117.95204 * 179.97438 * 12 11 10 14 14 C 1.39404 * 119.91856 * 0.02562 * 13 12 11 15 15 N 1.31206 * 121.85804 * 359.97438 * 14 13 12 16 16 C 1.33255 * 121.22063 * 0.02562 * 15 14 13 17 17 C 1.53001 * 109.47380 * 239.99980 * 2 1 3 18 18 C 1.53953 * 113.74020 * 158.73704 * 17 2 1 19 19 N 1.47814 * 86.03691 * 222.08532 * 18 17 2 20 20 C 1.36934 * 134.45653 * 204.65149 * 19 18 17 21 21 H 1.08003 * 120.00034 * 173.35024 * 20 19 18 22 22 C 1.38813 * 119.99635 * 353.34034 * 20 19 18 23 23 N 1.31612 * 120.00483 * 5.06942 * 22 20 19 24 24 Si 1.86806 * 119.99660 * 185.06788 * 22 20 19 25 25 H 1.48494 * 109.46995 * 94.99092 * 24 22 20 26 26 H 1.48500 * 109.46974 * 214.98982 * 24 22 20 27 27 H 1.48500 * 109.47224 * 334.98971 * 24 22 20 28 28 C 1.47582 * 91.04915 * 24.55267 * 19 18 17 29 29 H 1.08999 * 109.46961 * 60.00195 * 1 2 3 30 30 H 1.09000 * 109.47038 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47333 * 300.00130 * 1 2 3 32 32 H 0.97003 * 119.99877 * 95.00184 * 4 2 1 33 33 H 1.07999 * 119.13579 * 180.28170 * 9 8 7 34 34 H 1.07995 * 120.63812 * 179.97438 * 10 9 8 35 35 H 1.07997 * 121.03204 * 359.95545 * 12 11 10 36 36 H 1.07994 * 120.04140 * 180.02562 * 13 12 11 37 37 H 1.07998 * 119.06590 * 180.02562 * 14 13 12 38 38 H 1.08989 * 112.94350 * 290.33120 * 17 2 1 39 39 H 1.08999 * 113.76978 * 336.35474 * 18 17 2 40 40 H 1.09005 * 113.76258 * 107.74707 * 18 17 2 41 41 H 0.97001 * 120.00317 * 179.97438 * 23 22 20 42 42 H 1.09003 * 113.76470 * 221.15399 * 28 19 18 43 43 H 1.08999 * 113.87129 * 89.76597 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1470 -0.0182 2.3571 6 8 1.8583 1.1613 2.4116 7 6 2.6395 -0.7154 3.5649 8 7 2.9530 -1.9977 3.5065 9 6 3.3967 -2.6729 4.5502 10 6 3.5626 -2.0770 5.7813 11 6 3.2495 -0.7155 5.9198 12 6 3.3912 -0.0327 7.1411 13 6 3.0610 1.2928 7.1759 14 6 2.5998 1.9251 6.0223 15 7 2.4696 1.2829 4.8855 16 6 2.7743 -0.0104 4.7841 17 6 2.0400 -0.7212 -1.2492 18 6 3.4849 -0.3519 -1.6316 19 7 2.9979 -0.3176 -3.0269 20 6 3.5876 -0.4756 -4.2526 21 1 2.9791 -0.5089 -5.1443 22 6 4.9674 -0.5929 -4.3490 23 7 5.7007 -0.6526 -3.2577 24 14 5.7834 -0.6662 -6.0278 25 1 6.2266 0.6950 -6.4225 26 1 6.9590 -1.5715 -5.9676 27 1 4.8134 -1.1803 -7.0277 28 6 1.6214 -0.0471 -2.5684 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 2.2491 -1.6317 1.1527 33 1 3.6399 -3.7188 4.4352 34 1 3.9265 -2.6464 6.6237 35 1 3.7495 -0.5404 8.0244 36 1 3.1572 1.8500 8.0961 37 1 2.3432 2.9732 6.0653 38 1 1.8529 -1.7947 -1.2262 39 1 3.8047 0.6192 -1.2539 40 1 4.2072 -1.1446 -1.4365 41 1 6.6648 -0.7349 -3.3251 42 1 0.8588 -0.5969 -3.1200 43 1 1.3909 1.0133 -2.4661 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000969864564.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:58:19 Heat of formation + Delta-G solvation = 96.094320 kcal Electronic energy + Delta-G solvation = -26708.553332 eV Core-core repulsion = 22949.064231 eV Total energy + Delta-G solvation = -3759.489101 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.53795 -39.47154 -38.29014 -37.77898 -34.66995 -33.97485 -32.20133 -31.76607 -31.05289 -29.86806 -27.43447 -25.80282 -24.78878 -24.38268 -24.04789 -23.38869 -21.35689 -20.32071 -19.39423 -18.69530 -17.79006 -17.68002 -16.69151 -16.36775 -15.90447 -15.42102 -15.03217 -14.82212 -14.63097 -14.49478 -14.16735 -13.81051 -13.59578 -13.44917 -13.22567 -13.04758 -12.77397 -12.52423 -12.34158 -11.99696 -11.56916 -11.25115 -11.20707 -11.07168 -10.84724 -10.67016 -10.29260 -10.20212 -10.10918 -9.82276 -9.66458 -9.66138 -9.37817 -9.22512 -8.79175 -8.72304 -8.56909 -6.78557 -5.71146 -3.02153 -0.33090 0.38348 1.38315 2.51043 3.16203 3.20355 3.43421 3.48287 3.50364 3.88166 3.92572 4.00163 4.15777 4.30171 4.42554 4.47457 4.51454 4.81537 5.01266 5.07750 5.17246 5.25611 5.33017 5.36234 5.40921 5.54645 5.61884 5.73398 5.77203 5.90989 5.98245 6.05972 6.14695 6.25249 6.35100 6.45927 6.50922 6.69495 6.77779 6.93074 7.32773 7.36593 7.45197 7.62414 7.64805 7.89416 8.04714 8.49516 9.11137 9.77535 10.68751 11.46474 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.018240 B = 0.002680 C = 0.002559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.754286 B =10446.262682 C =10937.274332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.151 3.849 3 H 0.089 0.911 4 N -0.699 5.699 5 C 0.562 3.438 6 O -0.499 6.499 7 C 0.148 3.852 8 N -0.441 5.441 9 C 0.078 3.922 10 C -0.127 4.127 11 C -0.084 4.084 12 C -0.065 4.065 13 C -0.156 4.156 14 C 0.130 3.870 15 N -0.418 5.418 16 C 0.105 3.895 17 C -0.146 4.146 18 C 0.174 3.826 19 N -0.613 5.613 20 C -0.222 4.222 21 H 0.080 0.920 22 C -0.008 4.008 23 N -0.918 5.918 24 Si 0.909 3.091 25 H -0.290 1.290 26 H -0.291 1.291 27 H -0.280 1.280 28 C 0.130 3.870 29 H 0.067 0.933 30 H 0.054 0.946 31 H 0.053 0.947 32 H 0.408 0.592 33 H 0.167 0.833 34 H 0.146 0.854 35 H 0.145 0.855 36 H 0.143 0.857 37 H 0.165 0.835 38 H 0.088 0.912 39 H 0.028 0.972 40 H 0.067 0.933 41 H 0.253 0.747 42 H 0.044 0.956 43 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.040 -2.057 25.263 26.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.046 3.954 3 H 0.107 0.893 4 N -0.350 5.350 5 C 0.345 3.655 6 O -0.371 6.371 7 C -0.005 4.005 8 N -0.154 5.154 9 C -0.068 4.068 10 C -0.147 4.147 11 C -0.092 4.092 12 C -0.091 4.091 13 C -0.177 4.177 14 C -0.044 4.044 15 N -0.126 5.126 16 C -0.020 4.020 17 C -0.166 4.166 18 C 0.049 3.951 19 N -0.339 5.339 20 C -0.350 4.350 21 H 0.097 0.903 22 C -0.205 4.205 23 N -0.565 5.565 24 Si 0.739 3.261 25 H -0.217 1.217 26 H -0.218 1.218 27 H -0.206 1.206 28 C 0.004 3.996 29 H 0.086 0.914 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.243 0.757 33 H 0.184 0.816 34 H 0.163 0.837 35 H 0.162 0.838 36 H 0.161 0.839 37 H 0.182 0.818 38 H 0.107 0.893 39 H 0.046 0.954 40 H 0.085 0.915 41 H 0.063 0.937 42 H 0.062 0.938 43 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -7.348 -1.429 23.442 24.608 hybrid contribution 1.234 -0.482 0.804 1.550 sum -6.114 -1.911 24.246 25.078 Atomic orbital electron populations 1.22128 0.95640 1.01761 1.02080 1.21133 0.93492 0.97611 0.83148 0.89341 1.45955 1.65608 1.14635 1.08848 1.17556 0.79264 0.86369 0.82313 1.90851 1.48305 1.14121 1.83840 1.21655 0.96448 0.89403 0.92999 1.67393 1.08353 1.07239 1.32427 1.22619 0.96037 1.00484 0.87705 1.22378 0.99192 0.93502 0.99672 1.18979 1.00025 0.95296 0.94865 1.21411 0.96633 0.94643 0.96412 1.22132 0.99403 0.95601 1.00569 1.23349 0.92899 1.00772 0.87412 1.68326 1.12002 1.06607 1.25640 1.19495 0.98087 0.91329 0.93063 1.23825 1.00899 0.99711 0.92206 1.22231 0.91290 0.98437 0.83176 1.45988 1.03554 1.82419 1.01981 1.19025 0.89825 1.42739 0.83425 0.90264 1.24821 0.95947 1.02551 0.97157 1.69841 1.04781 1.56006 1.25912 0.86149 0.79104 0.77399 0.83445 1.21685 1.21771 1.20579 1.22496 0.89669 0.96610 0.90862 0.91385 0.92731 0.92749 0.75675 0.81560 0.83654 0.83775 0.83947 0.81760 0.89345 0.95440 0.91471 0.93717 0.93826 0.94736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.26 9.31 37.16 0.35 -1.92 16 2 C 0.15 2.52 2.38 -67.93 -0.16 2.36 16 3 H 0.09 1.68 7.41 -51.92 -0.39 1.29 16 4 N -0.70 -11.16 5.07 -54.73 -0.28 -11.43 16 5 C 0.56 9.63 7.77 -12.31 -0.10 9.54 16 6 O -0.50 -9.82 14.87 5.32 0.08 -9.74 16 7 C 0.15 2.23 6.81 -82.55 -0.56 1.67 16 8 N -0.44 -5.74 9.48 -9.55 -0.09 -5.83 16 9 C 0.08 0.74 11.12 -17.66 -0.20 0.54 16 10 C -0.13 -1.02 9.93 -38.94 -0.39 -1.41 16 11 C -0.08 -0.87 5.75 -106.79 -0.61 -1.48 16 12 C -0.06 -0.47 9.94 -39.25 -0.39 -0.86 16 13 C -0.16 -1.06 10.03 -39.72 -0.40 -1.46 16 14 C 0.13 1.26 11.14 -17.38 -0.19 1.07 16 15 N -0.42 -6.00 8.49 -10.75 -0.09 -6.09 16 16 C 0.11 1.47 6.61 -84.63 -0.56 0.91 16 17 C -0.15 -2.77 3.47 -89.69 -0.31 -3.08 16 18 C 0.17 4.24 6.99 -2.83 -0.02 4.22 16 19 N -0.61 -16.23 3.70 -177.66 -0.66 -16.89 16 20 C -0.22 -6.42 10.70 -15.06 -0.16 -6.58 16 21 H 0.08 2.20 7.83 -52.48 -0.41 1.79 16 22 C -0.01 -0.24 5.50 -17.43 -0.10 -0.33 16 23 N -0.92 -28.05 11.51 55.49 0.64 -27.41 16 24 Si 0.91 22.66 29.56 -169.99 -5.02 17.63 16 25 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 26 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 27 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 28 C 0.13 2.71 7.64 -2.96 -0.02 2.69 16 29 H 0.07 0.92 7.52 -51.93 -0.39 0.53 16 30 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.41 6.01 7.94 -40.82 -0.32 5.68 16 33 H 0.17 1.03 8.06 -52.49 -0.42 0.61 16 34 H 0.15 0.62 8.06 -52.49 -0.42 0.20 16 35 H 0.14 0.53 8.06 -52.49 -0.42 0.11 16 36 H 0.14 0.47 8.06 -52.49 -0.42 0.04 16 37 H 0.17 1.13 8.06 -52.49 -0.42 0.71 16 38 H 0.09 1.61 8.14 -51.93 -0.42 1.18 16 39 H 0.03 0.71 7.99 -51.93 -0.41 0.30 16 40 H 0.07 1.80 7.37 -51.93 -0.38 1.41 16 41 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 42 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.04 0.70 8.10 -51.93 -0.42 0.28 16 LS Contribution 364.44 15.07 5.49 5.49 Total: -1.00 -36.68 364.44 -9.42 -46.10 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: -5.67 Total: 2.30 kcal Atomic # 6 Polarization: 9.69 SS G_CDS: -3.82 Total: 5.87 kcal Atomic # 7 Polarization: -67.17 SS G_CDS: -0.48 Total: -67.65 kcal Atomic # 8 Polarization: -9.82 SS G_CDS: 0.08 Total: -9.74 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -5.02 Total: 17.63 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -36.68 -9.42 -46.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969864564.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.195 kcal (2) G-P(sol) polarization free energy of solvation -36.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.101 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds