Wall clock time and date at job start Tue Mar 31 2020 14:58:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.47597 * 2 1 4 4 N 1.46507 * 109.47226 * 119.99670 * 2 1 3 5 5 C 1.34776 * 120.00011 * 275.00199 * 4 2 1 6 6 O 1.21538 * 119.99868 * 359.97438 * 5 4 2 7 7 C 1.47911 * 119.99638 * 179.97438 * 5 4 2 8 8 N 1.32375 * 120.64033 * 354.48368 * 7 5 4 9 9 N 1.28084 * 123.18572 * 180.02562 * 8 7 5 10 10 C 1.31796 * 123.49581 * 0.02562 * 9 8 7 11 11 C 1.40402 * 119.13876 * 359.97438 * 10 9 8 12 12 C 1.40233 * 122.73737 * 180.02562 * 11 10 9 13 13 C 1.36260 * 119.37101 * 179.69666 * 12 11 10 14 14 C 1.39379 * 121.06780 * 0.56475 * 13 12 11 15 15 C 1.36366 * 121.09055 * 359.43022 * 14 13 12 16 16 C 1.39826 * 119.41876 * 0.27290 * 15 14 13 17 17 C 1.53003 * 109.47025 * 239.99593 * 2 1 3 18 18 C 1.53951 * 113.73905 * 158.74162 * 17 2 1 19 19 N 1.47812 * 86.03555 * 222.08718 * 18 17 2 20 20 C 1.36931 * 134.45576 * 204.65128 * 19 18 17 21 21 H 1.08002 * 120.00408 * 179.86729 * 20 19 18 22 22 C 1.38814 * 119.99974 * 359.85893 * 20 19 18 23 23 N 1.31613 * 120.00103 * 0.02562 * 22 20 19 24 24 Si 1.86805 * 119.99755 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47044 * 60.00502 * 24 22 20 26 26 H 1.48505 * 109.46938 * 180.02562 * 24 22 20 27 27 H 1.48500 * 109.47439 * 300.00128 * 24 22 20 28 28 C 1.47585 * 91.04923 * 24.54861 * 19 18 17 29 29 H 1.09006 * 109.46941 * 299.99987 * 1 2 3 30 30 H 1.09002 * 109.46870 * 60.00060 * 1 2 3 31 31 H 1.08990 * 109.47246 * 180.02562 * 1 2 3 32 32 H 0.97006 * 119.99852 * 94.99187 * 4 2 1 33 33 H 1.08005 * 120.43025 * 179.97438 * 10 9 8 34 34 H 1.08008 * 120.31319 * 359.97438 * 12 11 10 35 35 H 1.07994 * 119.46413 * 180.29176 * 13 12 11 36 36 H 1.07999 * 119.45335 * 179.70263 * 14 13 12 37 37 H 1.07997 * 120.28700 * 180.29985 * 15 14 13 38 38 H 1.08994 * 112.94344 * 290.33262 * 17 2 1 39 39 H 1.09000 * 113.77157 * 336.35436 * 18 17 2 40 40 H 1.09003 * 113.76813 * 107.74603 * 18 17 2 41 41 H 0.97005 * 119.99887 * 179.97438 * 23 22 20 42 42 H 1.09004 * 113.76749 * 221.14677 * 28 19 18 43 43 H 1.09007 * 113.86469 * 89.77343 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 1.1963 5 6 2.1471 -0.0182 2.3572 6 8 1.8584 1.1612 2.4116 7 6 2.6396 -0.7156 3.5650 8 7 2.8543 -2.0217 3.5494 9 7 3.2795 -2.6744 4.5662 10 6 3.5460 -2.1157 5.7297 11 6 3.3608 -0.7324 5.8823 12 6 3.6211 -0.0605 7.0853 13 6 3.4231 1.2858 7.1553 14 6 2.9556 2.0022 6.0549 15 6 2.6924 1.3806 4.8700 16 6 2.8897 0.0007 4.7597 17 6 2.0400 -0.7214 -1.2492 18 6 3.4848 -0.3522 -1.6316 19 7 2.9978 -0.3178 -3.0268 20 6 3.5874 -0.4759 -4.2525 21 1 2.9928 -0.4040 -5.1512 22 6 4.9496 -0.7286 -4.3401 23 7 5.6743 -0.8166 -3.2450 24 14 5.7540 -0.9436 -6.0123 25 1 5.5661 0.2918 -6.8145 26 1 7.2054 -1.2024 -5.8337 27 1 5.1301 -2.0917 -6.7178 28 6 1.6213 -0.0473 -2.5683 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 2.2490 -1.6318 1.1527 33 1 3.9023 -2.7143 6.5551 34 1 3.9794 -0.6043 7.9470 35 1 3.6276 1.8055 8.0796 36 1 2.8034 3.0680 6.1408 37 1 2.3352 1.9491 4.0242 38 1 1.8528 -1.7948 -1.2261 39 1 3.8048 0.6189 -1.2539 40 1 4.2071 -1.1449 -1.4365 41 1 6.6261 -0.9936 -3.3062 42 1 0.8586 -0.5970 -3.1199 43 1 1.3909 1.0132 -2.4662 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970130698.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:58:13 Heat of formation + Delta-G solvation = 100.733093 kcal Electronic energy + Delta-G solvation = -26724.110775 eV Core-core repulsion = 22964.822826 eV Total energy + Delta-G solvation = -3759.287949 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.74947 -39.68186 -38.32901 -38.05594 -34.94146 -33.69162 -32.21447 -32.09920 -31.05101 -30.02148 -27.49978 -26.12939 -24.77534 -24.57349 -23.99132 -23.17319 -21.63632 -20.63379 -19.42822 -18.60835 -18.33819 -17.48915 -16.75079 -16.41581 -16.04178 -15.66002 -15.08112 -14.95742 -14.84007 -14.47988 -14.27083 -13.92154 -13.77304 -13.45618 -13.06819 -12.89551 -12.65065 -12.44064 -12.15082 -11.92292 -11.67591 -11.65309 -11.28641 -11.26595 -10.89600 -10.84400 -10.69936 -10.36650 -10.04344 -9.92287 -9.75556 -9.70983 -9.70241 -9.38042 -8.95780 -8.76158 -8.74160 -6.84257 -5.72783 -3.05214 -0.33137 0.28323 1.28190 2.38609 2.91667 2.97031 3.42193 3.45936 3.47523 3.66323 3.70785 4.03628 4.16453 4.28205 4.37901 4.48152 4.69139 4.76112 4.86798 5.07037 5.17141 5.27920 5.29325 5.30608 5.41381 5.55238 5.58577 5.66061 5.78317 5.85278 5.94824 6.00497 6.01280 6.07974 6.22643 6.33667 6.38542 6.42933 6.58965 6.66465 6.78859 7.26890 7.39397 7.52428 7.60011 8.01726 8.13024 8.45570 9.08032 9.74590 10.63778 11.44113 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.017642 B = 0.002696 C = 0.002576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.744964 B =10383.317404 C =10868.261862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.148 3.852 3 H 0.091 0.909 4 N -0.688 5.688 5 C 0.578 3.422 6 O -0.532 6.532 7 C 0.073 3.927 8 N -0.227 5.227 9 N -0.263 5.263 10 C 0.099 3.901 11 C -0.086 4.086 12 C -0.098 4.098 13 C -0.096 4.096 14 C -0.103 4.103 15 C -0.088 4.088 16 C -0.047 4.047 17 C -0.148 4.148 18 C 0.170 3.830 19 N -0.612 5.612 20 C -0.224 4.224 21 H 0.079 0.921 22 C -0.008 4.008 23 N -0.921 5.921 24 Si 0.912 3.088 25 H -0.286 1.286 26 H -0.290 1.290 27 H -0.284 1.284 28 C 0.131 3.869 29 H 0.054 0.946 30 H 0.070 0.930 31 H 0.056 0.944 32 H 0.412 0.588 33 H 0.181 0.819 34 H 0.140 0.860 35 H 0.133 0.867 36 H 0.134 0.866 37 H 0.176 0.824 38 H 0.090 0.910 39 H 0.026 0.974 40 H 0.072 0.928 41 H 0.254 0.746 42 H 0.045 0.955 43 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.442 2.128 23.884 25.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.044 3.956 3 H 0.109 0.891 4 N -0.337 5.337 5 C 0.361 3.639 6 O -0.409 6.409 7 C -0.084 4.084 8 N -0.064 5.064 9 N -0.095 5.095 10 C -0.075 4.075 11 C -0.094 4.094 12 C -0.118 4.118 13 C -0.115 4.115 14 C -0.123 4.123 15 C -0.107 4.107 16 C -0.055 4.055 17 C -0.168 4.168 18 C 0.045 3.955 19 N -0.338 5.338 20 C -0.351 4.351 21 H 0.097 0.903 22 C -0.205 4.205 23 N -0.568 5.568 24 Si 0.742 3.258 25 H -0.212 1.212 26 H -0.216 1.216 27 H -0.211 1.211 28 C 0.005 3.995 29 H 0.073 0.927 30 H 0.089 0.911 31 H 0.075 0.925 32 H 0.249 0.751 33 H 0.198 0.802 34 H 0.158 0.842 35 H 0.150 0.850 36 H 0.152 0.848 37 H 0.193 0.807 38 H 0.109 0.891 39 H 0.044 0.956 40 H 0.091 0.909 41 H 0.064 0.936 42 H 0.063 0.937 43 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -7.420 1.398 22.662 23.887 hybrid contribution 0.830 0.778 0.106 1.143 sum -6.590 2.176 22.769 23.803 Atomic orbital electron populations 1.22137 0.95266 1.02066 1.02226 1.21254 0.93764 0.97658 0.82974 0.89056 1.46026 1.63956 1.14879 1.08811 1.17419 0.78246 0.85939 0.82331 1.90605 1.51350 1.14869 1.84037 1.23071 0.97973 0.92704 0.94697 1.72751 1.07015 1.05938 1.20683 1.72661 1.09291 1.30711 0.96795 1.24828 0.93075 0.92053 0.97514 1.18921 1.00522 0.94904 0.95028 1.20942 0.99821 0.94916 0.96097 1.21172 0.96971 0.94265 0.99112 1.21290 0.97323 1.00973 0.92683 1.22067 0.95780 0.92911 0.99979 1.18629 0.98630 0.95670 0.92566 1.23852 1.00987 0.99893 0.92029 1.22307 0.91405 0.98516 0.83298 1.45969 1.03271 1.82602 1.01994 1.18971 0.91419 1.41803 0.82944 0.90319 1.24786 0.96068 1.02378 0.97239 1.69808 1.06140 1.55029 1.25806 0.86208 0.78432 0.77965 0.83192 1.21225 1.21587 1.21085 1.22482 0.89694 0.96581 0.90763 0.92714 0.91120 0.92487 0.75136 0.80240 0.84210 0.84954 0.84781 0.80722 0.89126 0.95645 0.90945 0.93628 0.93697 0.94748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.09 9.31 37.16 0.35 -1.74 16 2 C 0.15 2.29 2.38 -67.93 -0.16 2.12 16 3 H 0.09 1.56 7.41 -51.93 -0.39 1.18 16 4 N -0.69 -10.22 5.07 -54.72 -0.28 -10.49 16 5 C 0.58 8.81 7.75 -12.30 -0.10 8.71 16 6 O -0.53 -8.69 13.25 5.33 0.07 -8.62 16 7 C 0.07 1.05 6.90 -82.42 -0.57 0.48 16 8 N -0.23 -3.34 10.70 33.56 0.36 -2.98 16 9 N -0.26 -3.50 11.41 30.90 0.35 -3.15 16 10 C 0.10 0.97 11.20 -16.75 -0.19 0.78 16 11 C -0.09 -0.87 5.75 -106.85 -0.61 -1.48 16 12 C -0.10 -0.67 9.84 -39.54 -0.39 -1.06 16 13 C -0.10 -0.62 9.95 -39.87 -0.40 -1.02 16 14 C -0.10 -0.84 9.95 -39.83 -0.40 -1.24 16 15 C -0.09 -0.99 9.27 -39.66 -0.37 -1.36 16 16 C -0.05 -0.59 5.77 -106.57 -0.61 -1.21 16 17 C -0.15 -2.68 3.47 -89.69 -0.31 -3.00 16 18 C 0.17 4.03 7.08 -2.84 -0.02 4.01 16 19 N -0.61 -15.87 3.70 -177.69 -0.66 -16.53 16 20 C -0.22 -6.37 10.70 -15.06 -0.16 -6.54 16 21 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 22 C -0.01 -0.24 5.50 -17.43 -0.10 -0.33 16 23 N -0.92 -27.80 11.39 55.49 0.63 -27.17 16 24 Si 0.91 22.48 29.55 -169.99 -5.02 17.46 16 25 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 26 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 27 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 28 C 0.13 2.64 7.64 -2.97 -0.02 2.62 16 29 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.07 0.88 7.52 -51.93 -0.39 0.49 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.41 5.88 8.00 -40.82 -0.33 5.56 16 33 H 0.18 0.95 8.06 -52.48 -0.42 0.53 16 34 H 0.14 0.50 8.06 -52.48 -0.42 0.08 16 35 H 0.13 0.47 8.06 -52.49 -0.42 0.05 16 36 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 37 H 0.18 2.20 5.12 -52.49 -0.27 1.93 16 38 H 0.09 1.61 8.14 -51.93 -0.42 1.18 16 39 H 0.03 0.63 7.99 -51.93 -0.41 0.22 16 40 H 0.07 1.91 7.16 -51.93 -0.37 1.54 16 41 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 42 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 43 H 0.03 0.67 8.10 -51.93 -0.42 0.25 16 LS Contribution 361.08 15.07 5.44 5.44 Total: -1.00 -34.24 361.08 -8.67 -42.91 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: -5.51 Total: 3.39 kcal Atomic # 6 Polarization: 3.80 SS G_CDS: -4.06 Total: -0.25 kcal Atomic # 7 Polarization: -60.74 SS G_CDS: 0.41 Total: -60.33 kcal Atomic # 8 Polarization: -8.69 SS G_CDS: 0.07 Total: -8.62 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.46 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -34.24 -8.67 -42.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970130698.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.643 kcal (2) G-P(sol) polarization free energy of solvation -34.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.909 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds