Wall clock time and date at job start Tue Mar 31 2020 14:58:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.47271 * 2 1 4 4 N 1.46500 * 109.46938 * 120.00381 * 2 1 3 5 5 C 1.34774 * 120.00009 * 274.99465 * 4 2 1 6 6 O 1.21554 * 119.99733 * 0.02562 * 5 4 2 7 7 C 1.47863 * 119.99871 * 180.02562 * 5 4 2 8 8 C 1.40634 * 120.26317 * 0.02580 * 7 5 4 9 9 N 1.30849 * 121.65747 * 179.97438 * 8 7 5 10 10 C 1.33589 * 121.58512 * 0.02587 * 9 8 7 11 11 C 1.40646 * 121.62931 * 180.02562 * 10 9 8 12 12 N 1.31154 * 120.03568 * 179.97438 * 11 10 9 13 13 C 1.32491 * 122.89657 * 0.02562 * 12 11 10 14 14 C 1.36313 * 121.70943 * 0.02562 * 13 12 11 15 15 C 1.40600 * 118.64924 * 359.95652 * 14 13 12 16 16 C 1.38995 * 120.25692 * 180.02562 * 7 5 4 17 17 C 1.53007 * 109.46937 * 240.00261 * 2 1 3 18 18 C 1.53937 * 113.73999 * 158.74216 * 17 2 1 19 19 N 1.47809 * 86.03793 * 222.08567 * 18 17 2 20 20 C 1.36939 * 134.46129 * 204.64900 * 19 18 17 21 21 H 1.07989 * 120.00501 * 179.86525 * 20 19 18 22 22 C 1.38820 * 119.99494 * 359.85970 * 20 19 18 23 23 N 1.31616 * 120.00059 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 119.99553 * 180.02562 * 22 20 19 25 25 H 1.48492 * 109.47487 * 60.00297 * 24 22 20 26 26 H 1.48504 * 109.46695 * 180.02562 * 24 22 20 27 27 H 1.48499 * 109.47237 * 299.99479 * 24 22 20 28 28 C 1.47581 * 91.05265 * 24.54904 * 19 18 17 29 29 H 1.09002 * 109.47367 * 299.99486 * 1 2 3 30 30 H 1.09003 * 109.47408 * 59.99963 * 1 2 3 31 31 H 1.08999 * 109.47239 * 179.97438 * 1 2 3 32 32 H 0.96997 * 119.99652 * 94.99974 * 4 2 1 33 33 H 1.07995 * 119.16765 * 359.97438 * 8 7 5 34 34 H 1.07996 * 119.98401 * 359.97438 * 11 10 9 35 35 H 1.07997 * 119.14667 * 180.02562 * 13 12 11 36 36 H 1.08001 * 120.67881 * 180.02562 * 14 13 12 37 37 H 1.07997 * 121.11352 * 359.74537 * 16 7 5 38 38 H 1.08998 * 112.94352 * 290.33364 * 17 2 1 39 39 H 1.09007 * 113.77102 * 336.34382 * 18 17 2 40 40 H 1.08993 * 113.77360 * 107.74780 * 18 17 2 41 41 H 0.96995 * 120.00042 * 180.02562 * 23 22 20 42 42 H 1.08994 * 113.77264 * 221.15557 * 28 19 18 43 43 H 1.09004 * 113.87048 * 89.76431 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1471 -0.0184 2.3571 6 8 1.8577 1.1609 2.4118 7 6 2.6405 -0.7154 3.5642 8 6 2.9774 -2.0796 3.5070 9 7 3.4170 -2.7231 4.5581 10 6 3.5670 -2.1156 5.7383 11 6 4.0399 -2.8062 6.8686 12 7 4.1756 -2.1786 8.0122 13 6 3.8842 -0.8956 8.1679 14 6 3.4181 -0.1364 7.1362 15 6 3.2469 -0.7406 5.8782 16 6 2.7749 -0.0274 4.7644 17 6 2.0400 -0.7212 -1.2493 18 6 3.4847 -0.3521 -1.6317 19 7 2.9978 -0.3175 -3.0269 20 6 3.5873 -0.4755 -4.2527 21 1 2.9927 -0.4035 -5.1513 22 6 4.9495 -0.7282 -4.3403 23 7 5.6742 -0.8164 -3.2452 24 14 5.7539 -0.9430 -6.0125 25 1 5.5660 0.2924 -6.8146 26 1 7.2053 -1.2018 -5.8339 27 1 5.1300 -2.0911 -6.7181 28 6 1.6213 -0.0471 -2.5685 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 2.2489 -1.6318 1.1525 33 1 2.8707 -2.6093 2.5719 34 1 4.2913 -3.8539 6.7948 35 1 4.0194 -0.4394 9.1374 36 1 3.1861 0.9084 7.2817 37 1 2.5277 1.0213 4.8372 38 1 1.8528 -1.7948 -1.2264 39 1 3.8047 0.6191 -1.2540 40 1 4.2070 -1.1447 -1.4368 41 1 6.6261 -0.9925 -3.3063 42 1 0.8586 -0.5967 -3.1200 43 1 1.3908 1.0134 -2.4661 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970161807.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:58:31 Heat of formation + Delta-G solvation = 86.872784 kcal Electronic energy + Delta-G solvation = -26290.042362 eV Core-core repulsion = 22530.153386 eV Total energy + Delta-G solvation = -3759.888977 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.61811 -39.98486 -38.43284 -37.83089 -35.02400 -34.05884 -32.58883 -31.93355 -30.78328 -30.24711 -27.55987 -25.94503 -24.92508 -24.73597 -23.95024 -22.96796 -21.87696 -20.77979 -19.58892 -18.69285 -18.09746 -17.77374 -16.82958 -16.52354 -16.06970 -15.42984 -15.38467 -14.91981 -14.77158 -14.61935 -14.48777 -13.90622 -13.72311 -13.54717 -13.41996 -13.22445 -12.92048 -12.82778 -12.48435 -12.19131 -11.72357 -11.39114 -11.33171 -11.20349 -10.92918 -10.76773 -10.48499 -10.40641 -10.19437 -9.94323 -9.82053 -9.71098 -9.68628 -9.44650 -8.97166 -8.86208 -8.81472 -6.90088 -5.78468 -3.10855 -0.31947 0.09541 1.35948 2.24196 2.99395 3.07618 3.38485 3.42629 3.43934 3.66262 3.69352 3.96547 4.05215 4.23627 4.27667 4.35383 4.43355 4.63655 4.82055 4.98832 5.09975 5.12844 5.21149 5.23507 5.30480 5.48469 5.50001 5.58748 5.64102 5.72003 5.88450 5.89853 5.96067 6.10887 6.17199 6.29252 6.34705 6.50017 6.59388 6.71423 7.19825 7.24553 7.32193 7.44954 7.51819 7.53052 7.96172 8.10122 9.02807 9.69212 10.57763 11.38521 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.017825 B = 0.002477 C = 0.002279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1570.471696 B =11299.457595 C =12281.214371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.150 3.850 3 H 0.090 0.910 4 N -0.707 5.707 5 C 0.562 3.438 6 O -0.534 6.534 7 C -0.168 4.168 8 C 0.163 3.837 9 N -0.456 5.456 10 C 0.081 3.919 11 C 0.163 3.837 12 N -0.470 5.470 13 C 0.071 3.929 14 C -0.133 4.133 15 C -0.087 4.087 16 C 0.006 3.994 17 C -0.148 4.148 18 C 0.170 3.830 19 N -0.613 5.613 20 C -0.224 4.224 21 H 0.079 0.921 22 C -0.008 4.008 23 N -0.922 5.922 24 Si 0.912 3.088 25 H -0.285 1.285 26 H -0.290 1.290 27 H -0.284 1.284 28 C 0.131 3.869 29 H 0.054 0.946 30 H 0.069 0.931 31 H 0.055 0.945 32 H 0.400 0.600 33 H 0.169 0.831 34 H 0.175 0.825 35 H 0.160 0.840 36 H 0.145 0.855 37 H 0.159 0.841 38 H 0.089 0.911 39 H 0.026 0.974 40 H 0.072 0.928 41 H 0.254 0.746 42 H 0.045 0.955 43 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.045 -1.658 20.785 22.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.046 3.954 3 H 0.108 0.892 4 N -0.357 5.357 5 C 0.347 3.653 6 O -0.412 6.412 7 C -0.174 4.174 8 C -0.012 4.012 9 N -0.164 5.164 10 C -0.042 4.042 11 C -0.010 4.010 12 N -0.178 5.178 13 C -0.071 4.071 14 C -0.153 4.153 15 C -0.094 4.094 16 C -0.021 4.021 17 C -0.168 4.168 18 C 0.045 3.955 19 N -0.339 5.339 20 C -0.352 4.352 21 H 0.097 0.903 22 C -0.204 4.204 23 N -0.569 5.569 24 Si 0.742 3.258 25 H -0.212 1.212 26 H -0.216 1.216 27 H -0.211 1.211 28 C 0.004 3.996 29 H 0.073 0.927 30 H 0.088 0.912 31 H 0.074 0.926 32 H 0.235 0.765 33 H 0.186 0.814 34 H 0.192 0.808 35 H 0.178 0.822 36 H 0.163 0.837 37 H 0.176 0.824 38 H 0.108 0.892 39 H 0.044 0.956 40 H 0.090 0.910 41 H 0.064 0.936 42 H 0.063 0.937 43 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -7.427 -2.099 21.433 22.780 hybrid contribution 0.166 0.952 -1.691 1.947 sum -7.261 -1.147 19.742 21.066 Atomic orbital electron populations 1.22137 0.95403 1.01927 1.02247 1.21186 0.93636 0.97671 0.82924 0.89165 1.46033 1.66083 1.14119 1.09508 1.17904 0.78100 0.86488 0.82829 1.90787 1.50375 1.15193 1.84849 1.21213 1.04558 0.95993 0.95641 1.23234 0.90423 0.90280 0.97214 1.67901 1.12471 1.37758 0.98270 1.20073 0.98857 0.91136 0.94142 1.23173 0.92170 1.00298 0.85348 1.67463 1.14156 1.10854 1.25366 1.22308 0.95931 0.89440 0.99446 1.22003 0.99643 1.01691 0.91983 1.18959 1.00384 0.94715 0.95341 1.21937 0.89857 1.00627 0.89679 1.23855 1.01020 0.99748 0.92176 1.22304 0.91300 0.98542 0.83369 1.45986 1.03275 1.82603 1.02007 1.18974 0.91439 1.41806 0.82944 0.90309 1.24785 0.96051 1.02323 0.97288 1.69796 1.06164 1.55058 1.25840 0.86203 0.78436 0.77996 0.83143 1.21196 1.21559 1.21068 1.22482 0.89712 0.96623 0.90760 0.92735 0.91205 0.92581 0.76494 0.81365 0.80780 0.82241 0.83698 0.82380 0.89238 0.95631 0.90974 0.93596 0.93696 0.94750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.93 9.31 37.16 0.35 -1.59 16 2 C 0.15 2.13 2.38 -67.93 -0.16 1.97 16 3 H 0.09 1.50 7.41 -51.93 -0.39 1.11 16 4 N -0.71 -8.68 5.03 -54.74 -0.28 -8.96 16 5 C 0.56 7.41 7.74 -12.32 -0.10 7.32 16 6 O -0.53 -8.72 16.05 5.32 0.09 -8.64 16 7 C -0.17 -1.86 5.89 -104.77 -0.62 -2.48 16 8 C 0.16 1.65 10.68 -17.07 -0.18 1.47 16 9 N -0.46 -5.05 10.33 -10.65 -0.11 -5.16 16 10 C 0.08 0.87 6.62 -84.81 -0.56 0.31 16 11 C 0.16 1.56 11.25 -16.93 -0.19 1.37 16 12 N -0.47 -4.55 10.28 -13.11 -0.13 -4.69 16 13 C 0.07 0.56 11.08 -17.96 -0.20 0.36 16 14 C -0.13 -1.02 9.88 -39.38 -0.39 -1.41 16 15 C -0.09 -0.87 5.75 -106.80 -0.61 -1.48 16 16 C 0.01 0.06 9.51 -38.48 -0.37 -0.31 16 17 C -0.15 -2.49 3.47 -89.69 -0.31 -2.80 16 18 C 0.17 3.83 7.08 -2.84 -0.02 3.81 16 19 N -0.61 -15.37 3.70 -177.72 -0.66 -16.03 16 20 C -0.22 -6.23 10.70 -15.06 -0.16 -6.39 16 21 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 22 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 23 N -0.92 -27.09 11.39 55.49 0.63 -26.46 16 24 Si 0.91 22.02 29.55 -169.99 -5.02 16.99 16 25 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 26 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 27 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 28 C 0.13 2.52 7.64 -2.96 -0.02 2.50 16 29 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.07 0.83 7.52 -51.93 -0.39 0.44 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.40 3.96 6.63 -40.82 -0.27 3.69 16 33 H 0.17 1.28 6.37 -52.49 -0.33 0.94 16 34 H 0.18 1.29 8.06 -52.49 -0.42 0.86 16 35 H 0.16 0.78 8.06 -52.49 -0.42 0.36 16 36 H 0.15 0.72 8.06 -52.49 -0.42 0.30 16 37 H 0.16 1.46 7.71 -52.49 -0.40 1.05 16 38 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 39 H 0.03 0.61 7.99 -51.93 -0.41 0.20 16 40 H 0.07 1.79 7.16 -51.93 -0.37 1.42 16 41 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 42 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.03 0.65 8.10 -51.93 -0.42 0.23 16 LS Contribution 363.90 15.07 5.48 5.48 Total: -1.00 -34.30 363.90 -9.14 -43.44 By element: Atomic # 1 Polarization: 7.18 SS G_CDS: -5.50 Total: 1.68 kcal Atomic # 6 Polarization: 5.97 SS G_CDS: -3.64 Total: 2.33 kcal Atomic # 7 Polarization: -60.75 SS G_CDS: -0.55 Total: -61.29 kcal Atomic # 8 Polarization: -8.72 SS G_CDS: 0.09 Total: -8.64 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -34.30 -9.14 -43.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970161807.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.311 kcal (2) G-P(sol) polarization free energy of solvation -34.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.438 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds