Wall clock time and date at job start Tue Mar 31 2020 14:58:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 109.46682 * 2 1 4 4 N 1.46495 * 109.47361 * 240.00603 * 2 1 3 5 5 C 1.34773 * 120.00444 * 84.99505 * 4 2 1 6 6 O 1.21554 * 120.00084 * 0.02562 * 5 4 2 7 7 C 1.47866 * 120.00350 * 180.02562 * 5 4 2 8 8 C 1.40631 * 120.25703 * 359.72067 * 7 5 4 9 9 N 1.30859 * 121.65480 * 179.74128 * 8 7 5 10 10 C 1.33590 * 121.58089 * 0.54721 * 9 8 7 11 11 C 1.40649 * 121.62534 * 179.70091 * 10 9 8 12 12 N 1.31150 * 120.03727 * 180.02562 * 11 10 9 13 13 C 1.32492 * 122.89464 * 0.02562 * 12 11 10 14 14 C 1.36317 * 121.70938 * 0.02562 * 13 12 11 15 15 C 1.40598 * 118.65260 * 359.97438 * 14 13 12 16 16 C 1.38989 * 120.25986 * 180.02562 * 7 5 4 17 17 C 1.52994 * 109.47408 * 119.99854 * 2 1 3 18 18 C 1.53496 * 114.20848 * 300.00740 * 17 2 1 19 19 N 1.47070 * 87.98352 * 220.34045 * 18 17 2 20 20 C 1.36935 * 136.05550 * 207.07944 * 19 18 17 21 21 H 1.08005 * 120.00172 * 6.50069 * 20 19 18 22 22 C 1.38815 * 119.99990 * 186.49806 * 20 19 18 23 23 N 1.31619 * 119.99663 * 6.42579 * 22 20 19 24 24 Si 1.86800 * 119.99976 * 186.42252 * 22 20 19 25 25 H 1.48495 * 109.47340 * 265.02201 * 24 22 20 26 26 H 1.48498 * 109.46951 * 25.02385 * 24 22 20 27 27 H 1.48498 * 109.46744 * 145.01993 * 24 22 20 28 28 C 1.47064 * 87.88277 * 27.34197 * 19 18 17 29 29 H 1.09004 * 109.47393 * 60.00317 * 1 2 3 30 30 H 1.09004 * 109.46660 * 179.97438 * 1 2 3 31 31 H 1.08991 * 109.47372 * 299.99509 * 1 2 3 32 32 H 0.96999 * 120.00021 * 264.99679 * 4 2 1 33 33 H 1.07999 * 119.17384 * 359.97438 * 8 7 5 34 34 H 1.07996 * 119.97987 * 0.02737 * 11 10 9 35 35 H 1.07992 * 119.14696 * 180.02562 * 13 12 11 36 36 H 1.07999 * 120.67667 * 180.02562 * 14 13 12 37 37 H 1.08005 * 121.11512 * 359.97438 * 16 7 5 38 38 H 1.09001 * 113.41134 * 73.20072 * 17 2 1 39 39 H 1.09004 * 113.46865 * 105.56483 * 18 17 2 40 40 H 1.08993 * 113.51976 * 335.12892 * 18 17 2 41 41 H 0.97005 * 119.99413 * 179.97438 * 23 22 20 42 42 H 1.09000 * 113.46743 * 87.44096 * 28 19 18 43 43 H 1.08999 * 113.46191 * 217.87327 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6904 -1.1962 5 6 2.1470 -0.0181 -2.3571 6 8 1.8583 1.1614 -2.4116 7 6 2.6395 -0.7152 -3.5646 8 6 2.9806 -2.0782 -3.5064 9 7 3.4143 -2.7232 -4.5591 10 6 3.5646 -2.1154 -5.7392 11 6 4.0365 -2.8062 -6.8698 12 7 4.1726 -2.1785 -8.0133 13 6 3.8833 -0.8949 -8.1683 14 6 3.4203 -0.1349 -7.1357 15 6 3.2485 -0.7394 -5.8780 16 6 2.7747 -0.0268 -4.7645 17 6 2.0400 -0.7212 1.2492 18 6 1.5898 -0.0847 2.5714 19 7 2.9390 -0.3446 3.0959 20 6 3.4925 -0.5603 4.3296 21 1 2.8564 -0.6648 5.1962 22 6 4.8713 -0.6448 4.4665 23 7 5.6515 -0.3926 3.4370 24 14 5.6194 -1.1163 6.1120 25 1 5.9751 0.1134 6.8646 26 1 4.6362 -1.9083 6.8939 27 1 6.8414 -1.9290 5.8855 28 6 3.4328 -0.2641 1.7130 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8899 32 1 2.2491 -1.6316 -1.1527 33 1 2.8787 -2.6069 -2.5702 34 1 4.2869 -3.8542 -6.7963 35 1 4.0179 -0.4388 -9.1379 36 1 3.1893 0.9100 -7.2809 37 1 2.5246 1.0213 -4.8379 38 1 1.9119 -1.8028 1.2075 39 1 0.8095 -0.6495 3.0816 40 1 1.3544 0.9761 2.4855 41 1 6.6151 -0.4513 3.5328 42 1 3.6837 0.7494 1.3999 43 1 4.2228 -0.9818 1.4919 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970161808.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:58:34 Heat of formation + Delta-G solvation = 89.838417 kcal Electronic energy + Delta-G solvation = -26245.091000 eV Core-core repulsion = 22485.330622 eV Total energy + Delta-G solvation = -3759.760377 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.62955 -40.00995 -38.54117 -37.90501 -35.08044 -34.07067 -32.60852 -31.97864 -30.79369 -30.27633 -27.60152 -25.95123 -24.92870 -24.62540 -23.99372 -22.98036 -21.92601 -20.79311 -19.66010 -18.71990 -18.12589 -17.78766 -16.83061 -16.54636 -16.05031 -15.44003 -15.39874 -14.91620 -14.78709 -14.62896 -14.49785 -13.92725 -13.74135 -13.55991 -13.43450 -13.25824 -12.94365 -12.83839 -12.49080 -12.21498 -11.75676 -11.46575 -11.26468 -11.21414 -11.02581 -10.80547 -10.50070 -10.41840 -10.20158 -9.99294 -9.85024 -9.72603 -9.70387 -9.27603 -8.98398 -8.87352 -8.81654 -6.92439 -5.82183 -3.13370 -0.33031 0.08322 1.34886 2.22968 2.98012 3.06384 3.36693 3.41770 3.44103 3.64837 3.68301 3.95460 4.04195 4.22512 4.26487 4.34046 4.41909 4.62492 4.80867 4.97167 5.08475 5.11684 5.17349 5.28113 5.29430 5.47139 5.48646 5.60345 5.63366 5.69632 5.86866 5.88699 5.96456 6.09785 6.15433 6.29237 6.34565 6.46778 6.60212 6.69726 7.13542 7.23227 7.28391 7.43487 7.47945 7.50754 7.92758 8.08821 8.99556 9.66232 10.60285 11.36388 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.018063 B = 0.002437 C = 0.002254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.749069 B =11488.712014 C =12420.875464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.154 3.846 3 H 0.091 0.909 4 N -0.708 5.708 5 C 0.562 3.438 6 O -0.534 6.534 7 C -0.168 4.168 8 C 0.163 3.837 9 N -0.456 5.456 10 C 0.081 3.919 11 C 0.163 3.837 12 N -0.469 5.469 13 C 0.071 3.929 14 C -0.133 4.133 15 C -0.087 4.087 16 C 0.006 3.994 17 C -0.155 4.155 18 C 0.130 3.870 19 N -0.610 5.610 20 C -0.220 4.220 21 H 0.082 0.918 22 C -0.007 4.007 23 N -0.919 5.919 24 Si 0.912 3.088 25 H -0.289 1.289 26 H -0.279 1.279 27 H -0.289 1.289 28 C 0.170 3.830 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.070 0.930 32 H 0.399 0.601 33 H 0.169 0.831 34 H 0.175 0.825 35 H 0.160 0.840 36 H 0.145 0.855 37 H 0.159 0.841 38 H 0.093 0.907 39 H 0.042 0.958 40 H 0.034 0.966 41 H 0.254 0.746 42 H 0.029 0.971 43 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.885 -2.428 -21.218 22.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.050 3.950 3 H 0.109 0.891 4 N -0.358 5.358 5 C 0.347 3.653 6 O -0.411 6.411 7 C -0.174 4.174 8 C -0.012 4.012 9 N -0.164 5.164 10 C -0.042 4.042 11 C -0.010 4.010 12 N -0.178 5.178 13 C -0.071 4.071 14 C -0.153 4.153 15 C -0.094 4.094 16 C -0.021 4.021 17 C -0.175 4.175 18 C 0.003 3.997 19 N -0.336 5.336 20 C -0.347 4.347 21 H 0.099 0.901 22 C -0.204 4.204 23 N -0.565 5.565 24 Si 0.742 3.258 25 H -0.216 1.216 26 H -0.205 1.205 27 H -0.216 1.216 28 C 0.044 3.956 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.088 0.912 32 H 0.235 0.765 33 H 0.186 0.814 34 H 0.192 0.808 35 H 0.178 0.822 36 H 0.163 0.837 37 H 0.176 0.824 38 H 0.111 0.889 39 H 0.060 0.940 40 H 0.051 0.949 41 H 0.064 0.936 42 H 0.047 0.953 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -7.274 -2.865 -21.835 23.192 hybrid contribution 0.164 0.863 1.651 1.870 sum -7.110 -2.002 -20.184 21.493 Atomic orbital electron populations 1.22134 0.95321 1.01953 1.02280 1.21089 0.93668 0.97585 0.82690 0.89092 1.46036 1.66128 1.14100 1.09524 1.17903 0.78106 0.86494 0.82823 1.90790 1.50322 1.15170 1.84846 1.21209 1.04571 0.95992 0.95652 1.23231 0.90481 0.90268 0.97207 1.67905 1.12530 1.37733 0.98246 1.20075 0.98871 0.91122 0.94149 1.23172 0.92174 1.00305 0.85345 1.67463 1.14126 1.10857 1.25380 1.22310 0.95930 0.89425 0.99447 1.22006 0.99627 1.01708 0.91970 1.18958 1.00380 0.94704 0.95347 1.21939 0.89822 1.00624 0.89686 1.23698 1.01677 0.99781 0.92367 1.22309 0.90380 0.96771 0.90263 1.45670 1.02984 1.82122 1.02781 1.18941 0.89898 1.42114 0.83783 0.90065 1.24841 0.95835 1.01978 0.97786 1.69853 1.03270 1.54015 1.29375 0.86099 0.78790 0.78023 0.82839 1.21595 1.20479 1.21570 1.22045 0.91947 0.97890 0.83760 0.92720 0.92562 0.91156 0.76519 0.81384 0.80782 0.82232 0.83684 0.82361 0.88883 0.94020 0.94896 0.93611 0.95347 0.92250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.92 9.29 37.16 0.35 -1.58 16 2 C 0.15 2.17 2.47 -67.94 -0.17 2.00 16 3 H 0.09 1.50 7.32 -51.93 -0.38 1.12 16 4 N -0.71 -8.56 5.03 -54.75 -0.28 -8.84 16 5 C 0.56 7.34 7.74 -12.32 -0.10 7.24 16 6 O -0.53 -8.66 16.05 5.32 0.09 -8.58 16 7 C -0.17 -1.84 5.89 -104.78 -0.62 -2.45 16 8 C 0.16 1.62 10.68 -17.06 -0.18 1.44 16 9 N -0.46 -4.98 10.33 -10.65 -0.11 -5.09 16 10 C 0.08 0.86 6.62 -84.80 -0.56 0.30 16 11 C 0.16 1.54 11.25 -16.93 -0.19 1.35 16 12 N -0.47 -4.51 10.28 -13.11 -0.13 -4.64 16 13 C 0.07 0.55 11.08 -17.96 -0.20 0.35 16 14 C -0.13 -1.01 9.88 -39.38 -0.39 -1.40 16 15 C -0.09 -0.85 5.75 -106.80 -0.61 -1.47 16 16 C 0.01 0.06 9.51 -38.48 -0.37 -0.30 16 17 C -0.16 -2.59 3.67 -89.98 -0.33 -2.92 16 18 C 0.13 2.51 7.33 -8.51 -0.06 2.45 16 19 N -0.61 -15.35 3.76 -184.62 -0.70 -16.04 16 20 C -0.22 -6.11 10.73 -15.06 -0.16 -6.27 16 21 H 0.08 2.17 7.84 -52.48 -0.41 1.76 16 22 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 23 N -0.92 -27.20 11.81 55.49 0.66 -26.54 16 24 Si 0.91 21.94 29.56 -169.99 -5.02 16.92 16 25 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 26 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 27 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 28 C 0.17 3.82 6.80 -8.38 -0.06 3.76 16 29 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.07 0.83 7.48 -51.93 -0.39 0.45 16 32 H 0.40 3.85 6.63 -40.82 -0.27 3.58 16 33 H 0.17 1.24 6.37 -52.49 -0.33 0.90 16 34 H 0.18 1.27 8.06 -52.49 -0.42 0.84 16 35 H 0.16 0.77 8.06 -52.49 -0.42 0.34 16 36 H 0.15 0.71 8.06 -52.49 -0.42 0.29 16 37 H 0.16 1.44 7.71 -52.48 -0.40 1.04 16 38 H 0.09 1.46 8.14 -51.93 -0.42 1.03 16 39 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 40 H 0.03 0.63 8.10 -51.93 -0.42 0.21 16 41 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 42 H 0.03 0.69 7.93 -51.93 -0.41 0.27 16 43 H 0.06 1.47 7.57 -51.93 -0.39 1.08 16 LS Contribution 364.34 15.07 5.49 5.49 Total: -1.00 -34.49 364.34 -9.26 -43.75 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: -5.51 Total: 1.39 kcal Atomic # 6 Polarization: 5.93 SS G_CDS: -3.74 Total: 2.19 kcal Atomic # 7 Polarization: -60.60 SS G_CDS: -0.56 Total: -61.16 kcal Atomic # 8 Polarization: -8.66 SS G_CDS: 0.09 Total: -8.58 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -34.49 -9.26 -43.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970161808.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.591 kcal (2) G-P(sol) polarization free energy of solvation -34.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.752 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds