Wall clock time and date at job start Tue Mar 31 2020 14:58:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08991 * 109.47355 * 2 1 4 4 N 1.46502 * 109.47174 * 120.00313 * 2 1 3 5 5 C 1.34770 * 120.00180 * 274.99776 * 4 2 1 6 6 O 1.21548 * 119.99671 * 0.02562 * 5 4 2 7 7 C 1.47913 * 120.00396 * 179.97438 * 5 4 2 8 8 C 1.38945 * 119.84802 * 180.02562 * 7 5 4 9 9 C 1.40644 * 117.38986 * 179.72692 * 8 7 5 10 10 C 1.40263 * 122.04372 * 180.02562 * 9 8 7 11 11 C 1.36268 * 119.47573 * 179.97438 * 10 9 8 12 12 C 1.39325 * 120.87614 * 0.02562 * 11 10 9 13 13 C 1.36233 * 121.15402 * 359.97438 * 12 11 10 14 14 C 1.40336 * 119.68154 * 359.97438 * 13 12 11 15 15 N 1.33822 * 121.61313 * 180.02562 * 14 13 12 16 16 N 1.28440 * 121.68152 * 179.97438 * 15 14 13 17 17 C 1.53008 * 109.47071 * 240.00090 * 2 1 3 18 18 C 1.53941 * 113.73848 * 158.74115 * 17 2 1 19 19 N 1.47818 * 86.03411 * 222.08536 * 18 17 2 20 20 C 1.36936 * 134.45344 * 204.64724 * 19 18 17 21 21 H 1.07999 * 119.99732 * 179.86833 * 20 19 18 22 22 C 1.38817 * 120.00435 * 359.86752 * 20 19 18 23 23 N 1.31616 * 119.99797 * 359.97438 * 22 20 19 24 24 Si 1.86794 * 120.00009 * 180.02562 * 22 20 19 25 25 H 1.48507 * 109.47272 * 89.99953 * 24 22 20 26 26 H 1.48502 * 109.46885 * 209.99691 * 24 22 20 27 27 H 1.48498 * 109.47478 * 329.99701 * 24 22 20 28 28 C 1.47578 * 91.04781 * 24.54958 * 19 18 17 29 29 H 1.08998 * 109.47522 * 59.99673 * 1 2 3 30 30 H 1.09003 * 109.47001 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47222 * 299.99319 * 1 2 3 32 32 H 0.97001 * 119.99610 * 94.99970 * 4 2 1 33 33 H 1.07994 * 121.30045 * 359.69878 * 8 7 5 34 34 H 1.07998 * 120.25688 * 359.95655 * 10 9 8 35 35 H 1.07993 * 119.56384 * 180.02562 * 11 10 9 36 36 H 1.07991 * 119.42207 * 179.97438 * 12 11 10 37 37 H 1.07998 * 120.15862 * 180.02562 * 13 12 11 38 38 H 1.09003 * 112.94376 * 290.33602 * 17 2 1 39 39 H 1.08994 * 113.77303 * 336.34685 * 18 17 2 40 40 H 1.09000 * 113.76954 * 107.74843 * 18 17 2 41 41 H 0.96999 * 120.00163 * 180.02562 * 23 22 20 42 42 H 1.09001 * 113.76579 * 221.14924 * 28 19 18 43 43 H 1.09001 * 113.87002 * 89.76907 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1471 -0.0185 2.3571 6 8 1.8576 1.1608 2.4118 7 6 2.6396 -0.7159 3.5649 8 6 2.7706 -0.0198 4.7603 9 6 3.2379 -0.7349 5.8776 10 6 3.4062 -0.1294 7.1315 11 6 3.8620 -0.8722 8.1791 12 6 4.1629 -2.2233 8.0202 13 6 4.0108 -2.8424 6.8162 14 6 3.5427 -2.1117 5.7133 15 7 3.3785 -2.6808 4.5133 16 7 2.9497 -2.0134 3.5032 17 6 2.0400 -0.7213 -1.2493 18 6 3.4847 -0.3520 -1.6317 19 7 2.9977 -0.3176 -3.0269 20 6 3.5874 -0.4756 -4.2526 21 1 2.9927 -0.4036 -5.1513 22 6 4.9496 -0.7283 -4.3403 23 7 5.6744 -0.8156 -3.2452 24 14 5.7540 -0.9431 -6.0124 25 1 6.2189 0.3761 -6.5112 26 1 6.9137 -1.8625 -5.8893 27 1 4.7690 -1.5138 -6.9660 28 6 1.6213 -0.0472 -2.5684 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 2.2490 -1.6319 1.1525 33 1 2.5238 1.0293 4.8286 34 1 3.1766 0.9173 7.2656 35 1 3.9918 -0.4076 9.1452 36 1 4.5230 -2.7897 8.8662 37 1 4.2485 -3.8906 6.7112 38 1 1.8527 -1.7948 -1.2264 39 1 3.8047 0.6190 -1.2540 40 1 4.2070 -1.1447 -1.4367 41 1 6.6263 -0.9918 -3.3063 42 1 0.8586 -0.5969 -3.1200 43 1 1.3908 1.0133 -2.4660 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970247136.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:58:24 Heat of formation + Delta-G solvation = 75.025273 kcal Electronic energy + Delta-G solvation = -26288.289299 eV Core-core repulsion = 22527.886576 eV Total energy + Delta-G solvation = -3760.402723 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.50071 -41.00086 -39.71584 -38.72435 -36.31774 -34.83063 -34.21971 -32.97991 -31.88225 -31.15979 -29.36437 -26.85281 -26.35922 -26.12036 -25.52210 -23.58960 -23.19461 -21.84014 -21.02773 -19.77920 -19.41654 -18.76654 -18.10120 -17.28618 -17.10818 -16.90160 -16.69403 -15.91151 -15.74442 -15.66050 -15.61279 -15.28440 -14.86979 -14.67493 -14.50359 -14.11250 -13.51960 -13.50843 -13.35741 -13.26195 -13.09872 -13.00174 -12.92162 -12.72172 -12.54035 -12.21415 -12.02058 -11.90493 -11.75904 -11.54635 -11.31863 -11.11858 -10.95038 -10.87135 -10.47814 -10.13776 -9.46132 -8.93090 -7.90663 -5.24783 -1.16916 -0.75324 0.64009 1.23176 1.43935 1.46682 1.55390 1.90276 2.08673 2.46874 2.69120 2.82168 3.18282 3.28292 3.31568 3.37870 3.45780 3.70932 3.74450 3.84150 3.92073 4.12990 4.18951 4.28083 4.42008 4.46579 4.53278 4.57567 4.69481 4.73605 4.81186 4.84858 4.91461 4.99930 5.06182 5.07041 5.24707 5.24936 5.32509 5.32594 5.40730 5.53440 5.64196 5.70596 5.92532 6.36897 6.90409 6.97974 7.35793 7.60374 8.56186 9.26250 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.017912 B = 0.002491 C = 0.002292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1562.797860 B =11238.868018 C =12213.570847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.157 3.843 3 H 0.070 0.930 4 N -0.693 5.693 5 C 0.578 3.422 6 O -0.561 6.561 7 C -0.030 4.030 8 C -0.026 4.026 9 C -0.085 4.085 10 C -0.100 4.100 11 C -0.083 4.083 12 C -0.070 4.070 13 C -0.101 4.101 14 C 0.052 3.948 15 N -0.227 5.227 16 N -0.214 5.214 17 C -0.113 4.113 18 C 0.167 3.833 19 N -0.645 5.645 20 C -0.234 4.234 21 H 0.087 0.913 22 C -0.073 4.073 23 N -0.956 5.956 24 Si 0.981 3.019 25 H -0.288 1.288 26 H -0.295 1.295 27 H -0.264 1.264 28 C 0.134 3.866 29 H 0.081 0.919 30 H 0.071 0.929 31 H 0.053 0.947 32 H 0.414 0.586 33 H 0.180 0.820 34 H 0.167 0.833 35 H 0.177 0.823 36 H 0.177 0.823 37 H 0.155 0.845 38 H 0.101 0.899 39 H 0.005 0.995 40 H 0.037 0.963 41 H 0.247 0.753 42 H 0.067 0.933 43 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.845 -1.294 28.306 29.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.052 3.948 3 H 0.088 0.912 4 N -0.342 5.342 5 C 0.362 3.638 6 O -0.440 6.440 7 C -0.164 4.164 8 C -0.056 4.056 9 C -0.093 4.093 10 C -0.119 4.119 11 C -0.103 4.103 12 C -0.090 4.090 13 C -0.122 4.122 14 C -0.076 4.076 15 N -0.083 5.083 16 N -0.072 5.072 17 C -0.132 4.132 18 C 0.041 3.959 19 N -0.371 5.371 20 C -0.362 4.362 21 H 0.105 0.895 22 C -0.266 4.266 23 N -0.605 5.605 24 Si 0.809 3.191 25 H -0.215 1.215 26 H -0.221 1.221 27 H -0.189 1.189 28 C 0.009 3.991 29 H 0.100 0.900 30 H 0.090 0.910 31 H 0.073 0.927 32 H 0.251 0.749 33 H 0.198 0.802 34 H 0.184 0.816 35 H 0.194 0.806 36 H 0.194 0.806 37 H 0.172 0.828 38 H 0.119 0.881 39 H 0.023 0.977 40 H 0.056 0.944 41 H 0.056 0.944 42 H 0.085 0.915 43 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -7.759 -1.786 27.112 28.257 hybrid contribution 0.983 0.812 -0.526 1.379 sum -6.776 -0.974 26.586 27.453 Atomic orbital electron populations 1.22058 0.92740 1.03177 1.02757 1.21010 0.95519 0.96011 0.82230 0.91216 1.45943 1.64586 1.14950 1.08736 1.17669 0.77539 0.85694 0.82858 1.90757 1.52381 1.15726 1.85153 1.22399 1.04668 0.93331 0.95969 1.22811 0.90307 1.02398 0.90078 1.19097 0.99871 0.93796 0.96553 1.21428 0.98547 1.02153 0.89724 1.21685 0.94279 0.93854 1.00441 1.21646 0.94665 0.95295 0.97414 1.21095 0.98962 1.01512 0.90652 1.20920 0.98698 0.92914 0.95039 1.73770 1.08929 1.28900 0.96671 1.73115 1.05614 1.05935 1.22552 1.23466 0.96395 1.00514 0.92865 1.22167 0.93971 0.96404 0.83329 1.46427 1.05945 1.82894 1.01884 1.19475 0.91932 1.40389 0.84393 0.89515 1.25703 0.96871 1.03035 1.00942 1.70037 1.05775 1.56795 1.27918 0.85035 0.77860 0.77176 0.79011 1.21467 1.22140 1.18890 1.22672 0.87568 0.97720 0.91161 0.90010 0.91024 0.92742 0.74886 0.80228 0.81578 0.80553 0.80585 0.82752 0.88101 0.97679 0.94420 0.94426 0.91516 0.93364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.83 9.31 71.98 0.67 -3.16 16 2 C 0.16 5.05 2.38 44.99 0.11 5.16 16 3 H 0.07 2.56 7.41 -2.39 -0.02 2.54 16 4 N -0.69 -21.87 5.07 -445.35 -2.26 -24.12 16 5 C 0.58 18.80 7.77 86.81 0.67 19.47 16 6 O -0.56 -20.28 16.02 -3.87 -0.06 -20.34 16 7 C -0.03 -0.87 6.82 41.62 0.28 -0.59 16 8 C -0.03 -0.60 9.51 23.03 0.22 -0.38 16 9 C -0.08 -1.63 5.75 -21.28 -0.12 -1.75 16 10 C -0.10 -1.03 9.81 22.30 0.22 -0.81 16 11 C -0.08 -0.45 9.96 22.07 0.22 -0.23 16 12 C -0.07 -0.46 9.94 22.06 0.22 -0.24 16 13 C -0.10 -1.41 10.00 22.31 0.22 -1.19 16 14 C 0.05 1.14 6.69 40.27 0.27 1.41 16 15 N -0.23 -6.49 11.55 -51.93 -0.60 -7.09 16 16 N -0.21 -6.62 10.70 -48.75 -0.52 -7.15 16 17 C -0.11 -4.19 3.47 -10.14 -0.04 -4.23 16 18 C 0.17 8.39 7.08 86.44 0.61 9.00 16 19 N -0.65 -34.34 3.70 -716.18 -2.65 -36.99 16 20 C -0.23 -13.54 10.70 84.03 0.90 -12.64 16 21 H 0.09 4.75 7.83 -2.91 -0.02 4.72 16 22 C -0.07 -4.32 5.50 84.86 0.47 -3.86 16 23 N -0.96 -60.39 11.39 21.65 0.25 -60.14 16 24 Si 0.98 47.26 29.55 68.60 2.03 49.29 16 25 H -0.29 -13.64 7.11 99.48 0.71 -12.94 16 26 H -0.29 -14.28 7.11 99.48 0.71 -13.57 16 27 H -0.26 -11.89 7.11 99.48 0.71 -11.18 16 28 C 0.13 5.34 7.64 86.48 0.66 6.00 16 29 H 0.08 1.91 7.52 -2.39 -0.02 1.89 16 30 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.41 12.57 7.93 -92.71 -0.74 11.84 16 33 H 0.18 3.41 7.69 -2.91 -0.02 3.39 16 34 H 0.17 0.83 8.06 -2.91 -0.02 0.80 16 35 H 0.18 -0.37 8.06 -2.91 -0.02 -0.40 16 36 H 0.18 -0.16 8.06 -2.92 -0.02 -0.18 16 37 H 0.15 1.76 8.06 -2.91 -0.02 1.74 16 38 H 0.10 3.58 8.14 -2.39 -0.02 3.56 16 39 H 0.01 0.29 7.99 -2.39 -0.02 0.27 16 40 H 0.04 2.13 7.17 -2.39 -0.02 2.12 16 41 H 0.25 15.16 8.31 -92.71 -0.77 14.39 16 42 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 43 H 0.05 1.83 8.10 -2.39 -0.02 1.81 16 Total: -1.00 -80.43 366.35 2.07 -78.36 By element: Atomic # 1 Polarization: 15.91 SS G_CDS: 0.31 Total: 16.22 kcal Atomic # 6 Polarization: 6.38 SS G_CDS: 5.59 Total: 11.97 kcal Atomic # 7 Polarization: -129.71 SS G_CDS: -5.78 Total: -135.50 kcal Atomic # 8 Polarization: -20.28 SS G_CDS: -0.06 Total: -20.34 kcal Atomic # 14 Polarization: 47.26 SS G_CDS: 2.03 Total: 49.29 kcal Total: -80.43 2.07 -78.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970247136.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.384 kcal (2) G-P(sol) polarization free energy of solvation -80.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.359 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds