Wall clock time and date at job start Tue Mar 31 2020 14:59:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.47106 * 2 1 4 4 N 1.46498 * 109.47442 * 239.99918 * 2 1 3 5 5 C 1.34779 * 119.99683 * 85.00303 * 4 2 1 6 6 O 1.21483 * 120.00324 * 359.97438 * 5 4 2 7 7 C 1.48389 * 119.99898 * 180.02562 * 5 4 2 8 8 C 1.40210 * 119.21927 * 179.97438 * 7 5 4 9 9 C 1.36644 * 119.90754 * 179.97438 * 8 7 5 10 10 C 1.40556 * 118.10501 * 359.97438 * 9 8 7 11 11 C 1.40402 * 122.06187 * 180.02562 * 10 9 8 12 12 N 1.31249 * 119.87566 * 179.97438 * 11 10 9 13 13 C 1.32603 * 122.68186 * 359.95545 * 12 11 10 14 14 C 1.36104 * 121.99304 * 0.04662 * 13 12 11 15 15 C 1.40945 * 118.76964 * 359.97438 * 14 13 12 16 16 N 1.31979 * 119.21618 * 359.71996 * 7 5 4 17 17 C 1.53004 * 109.47254 * 119.99727 * 2 1 3 18 18 C 1.53497 * 114.20756 * 300.00701 * 17 2 1 19 19 N 1.47070 * 87.98301 * 220.34168 * 18 17 2 20 20 C 1.36932 * 136.05620 * 207.08686 * 19 18 17 21 21 H 1.08006 * 120.00205 * 7.81892 * 20 19 18 22 22 C 1.38809 * 120.00281 * 187.82655 * 20 19 18 23 23 N 1.31616 * 120.00068 * 195.17204 * 22 20 19 24 24 Si 1.86802 * 119.99918 * 15.16359 * 22 20 19 25 25 H 1.48504 * 109.47042 * 270.00682 * 24 22 20 26 26 H 1.48499 * 109.47021 * 30.00157 * 24 22 20 27 27 H 1.48492 * 109.47106 * 150.00508 * 24 22 20 28 28 C 1.47068 * 87.88415 * 27.33811 * 19 18 17 29 29 H 1.08993 * 109.47359 * 300.00317 * 1 2 3 30 30 H 1.08999 * 109.46774 * 60.00056 * 1 2 3 31 31 H 1.09000 * 109.46904 * 179.97438 * 1 2 3 32 32 H 0.96997 * 120.00314 * 265.00182 * 4 2 1 33 33 H 1.07998 * 120.04643 * 359.97438 * 8 7 5 34 34 H 1.07995 * 120.94560 * 180.02562 * 9 8 7 35 35 H 1.08000 * 120.06659 * 359.97438 * 11 10 9 36 36 H 1.08000 * 119.00225 * 180.02562 * 13 12 11 37 37 H 1.08002 * 120.61851 * 179.97438 * 14 13 12 38 38 H 1.09005 * 113.40728 * 73.19861 * 17 2 1 39 39 H 1.08996 * 113.46841 * 105.55693 * 18 17 2 40 40 H 1.08998 * 113.51535 * 335.12668 * 18 17 2 41 41 H 0.96995 * 120.00585 * 354.89801 * 23 22 20 42 42 H 1.09005 * 113.46482 * 87.44223 * 28 19 18 43 43 H 1.09000 * 113.46807 * 217.87726 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1472 -0.0182 -2.3571 6 8 1.8578 1.1604 -2.4117 7 6 2.6413 -0.7178 -3.5688 8 6 2.7685 -0.0026 -4.7680 9 6 3.2227 -0.6327 -5.8922 10 6 3.5506 -1.9964 -5.8002 11 6 4.0250 -2.7249 -6.9027 12 7 4.3188 -3.9970 -6.7683 13 6 4.1885 -4.6443 -5.6183 14 6 3.7369 -4.0289 -4.4915 15 6 3.3995 -2.6618 -4.5540 16 7 2.9555 -1.9973 -3.4908 17 6 2.0400 -0.7212 1.2493 18 6 1.5897 -0.0846 2.5715 19 7 2.9389 -0.3445 3.0960 20 6 3.4924 -0.5603 4.3297 21 1 2.8556 -0.6862 5.1929 22 6 4.8721 -0.6173 4.4711 23 7 5.4012 -1.1127 5.5697 24 14 5.9780 0.0091 3.1020 25 1 6.2775 -1.1001 2.1611 26 1 5.2905 1.1048 2.3727 27 1 7.2449 0.5203 3.6839 28 6 3.4328 -0.2642 1.7130 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 2.2491 -1.6317 -1.1526 33 1 2.5079 1.0449 -4.8032 34 1 3.3275 -0.0980 -6.8246 35 1 4.1480 -2.2395 -7.8596 36 1 4.4482 -5.6917 -5.5747 37 1 3.6389 -4.5778 -3.5666 38 1 1.9118 -1.8029 1.2076 39 1 0.8094 -0.6493 3.0815 40 1 1.3544 0.9762 2.4855 41 1 4.8298 -1.3695 6.3102 42 1 3.6837 0.7493 1.3999 43 1 4.2228 -0.9820 1.4919 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970492270.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:59:00 Heat of formation + Delta-G solvation = 94.151852 kcal Electronic energy + Delta-G solvation = -26541.719741 eV Core-core repulsion = 22782.146408 eV Total energy + Delta-G solvation = -3759.573333 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.71150 -40.09632 -38.81402 -37.96010 -35.19723 -34.14388 -32.56118 -32.14710 -30.92161 -30.51250 -27.76744 -26.32893 -25.27615 -24.67034 -23.79649 -23.13529 -21.66549 -20.62339 -19.70777 -18.99210 -18.25848 -17.69892 -17.45345 -16.46667 -16.23143 -15.61720 -15.33278 -15.17363 -14.90466 -14.72252 -14.68441 -13.97615 -13.89414 -13.68446 -13.46028 -13.28119 -13.17068 -12.88953 -12.69664 -12.29102 -11.92359 -11.81923 -11.53169 -11.20749 -10.96005 -10.72902 -10.59784 -10.41751 -10.22164 -10.03661 -9.82389 -9.77075 -9.49458 -9.17654 -9.06164 -8.99277 -8.69010 -7.17951 -6.30498 -3.22474 -0.41673 0.09318 1.34980 2.08425 2.85471 2.99201 3.42018 3.49377 3.54275 3.63245 3.64790 3.85865 4.00401 4.18483 4.23544 4.37933 4.59407 4.66792 4.72659 4.83558 4.90002 5.09187 5.11943 5.18972 5.27742 5.42060 5.42720 5.43898 5.53444 5.57574 5.74038 5.83596 5.85421 5.98287 6.10795 6.13370 6.23472 6.26601 6.32627 6.39295 6.52443 6.92217 7.06644 7.13650 7.41312 7.46482 8.02410 8.23931 8.97561 9.50999 10.37790 11.19543 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.014094 B = 0.003011 C = 0.002717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1986.245933 B = 9296.346305 C =10301.140522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.149 3.851 3 H 0.093 0.907 4 N -0.695 5.695 5 C 0.565 3.435 6 O -0.528 6.528 7 C 0.144 3.856 8 C -0.131 4.131 9 C -0.037 4.037 10 C -0.155 4.155 11 C 0.159 3.841 12 N -0.483 5.483 13 C 0.088 3.912 14 C -0.133 4.133 15 C 0.153 3.847 16 N -0.446 5.446 17 C -0.139 4.139 18 C 0.131 3.869 19 N -0.625 5.625 20 C -0.305 4.305 21 H 0.082 0.918 22 C -0.023 4.023 23 N -0.932 5.932 24 Si 1.061 2.939 25 H -0.294 1.294 26 H -0.282 1.282 27 H -0.295 1.295 28 C 0.108 3.892 29 H 0.071 0.929 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.411 0.589 33 H 0.157 0.843 34 H 0.154 0.846 35 H 0.169 0.831 36 H 0.163 0.837 37 H 0.151 0.849 38 H 0.099 0.901 39 H 0.047 0.953 40 H 0.038 0.962 41 H 0.261 0.739 42 H 0.045 0.955 43 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.337 -2.490 -27.317 28.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.045 3.955 3 H 0.111 0.889 4 N -0.345 5.345 5 C 0.348 3.652 6 O -0.404 6.404 7 C -0.011 4.011 8 C -0.151 4.151 9 C -0.065 4.065 10 C -0.159 4.159 11 C -0.015 4.015 12 N -0.191 5.191 13 C -0.056 4.056 14 C -0.153 4.153 15 C 0.025 3.975 16 N -0.158 5.158 17 C -0.159 4.159 18 C 0.004 3.996 19 N -0.352 5.352 20 C -0.431 4.431 21 H 0.100 0.900 22 C -0.223 4.223 23 N -0.574 5.574 24 Si 0.892 3.108 25 H -0.222 1.222 26 H -0.208 1.208 27 H -0.222 1.222 28 C -0.018 4.018 29 H 0.090 0.910 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.247 0.753 33 H 0.174 0.826 34 H 0.171 0.829 35 H 0.186 0.814 36 H 0.180 0.820 37 H 0.169 0.831 38 H 0.117 0.883 39 H 0.066 0.934 40 H 0.055 0.945 41 H 0.071 0.929 42 H 0.063 0.937 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -5.604 -2.676 -27.335 28.031 hybrid contribution -1.635 0.364 0.565 1.767 sum -7.238 -2.312 -26.770 27.827 Atomic orbital electron populations 1.22120 0.94877 1.02187 1.02464 1.21143 0.94160 0.97521 0.82710 0.88948 1.46016 1.64652 1.14871 1.08953 1.17882 0.78462 0.86139 0.82692 1.90793 1.50302 1.14785 1.84493 1.21668 0.94968 0.89894 0.94608 1.21849 0.98859 1.02665 0.91764 1.21464 0.93413 0.92359 0.99308 1.19964 1.03313 0.96261 0.96411 1.23264 0.91402 0.89525 0.97310 1.67506 1.14822 1.09828 1.26921 1.22312 0.95350 1.00592 0.87319 1.21853 0.99653 0.92545 1.01240 1.18883 0.95752 0.94519 0.88376 1.67884 1.09879 1.07937 1.30061 1.23548 0.99178 1.00382 0.92808 1.22283 0.90397 0.97017 0.89891 1.46184 1.04013 1.83187 1.01841 1.20132 0.92128 1.47102 0.83725 0.90028 1.25754 0.94359 0.99206 1.02934 1.70898 1.37642 1.42748 1.06156 0.83791 0.75733 0.76721 0.74506 1.22164 1.20808 1.22230 1.22743 0.94648 0.98378 0.86043 0.91007 0.92489 0.92407 0.75268 0.82573 0.82865 0.81372 0.82027 0.83118 0.88263 0.93441 0.94464 0.92851 0.93730 0.93148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.90 9.29 37.16 0.35 -1.56 16 2 C 0.15 2.09 2.47 -67.93 -0.17 1.92 16 3 H 0.09 1.44 7.32 -51.93 -0.38 1.06 16 4 N -0.69 -9.05 5.06 -54.58 -0.28 -9.33 16 5 C 0.57 7.63 7.78 -12.08 -0.09 7.53 16 6 O -0.53 -8.28 15.94 5.38 0.09 -8.19 16 7 C 0.14 1.67 6.75 -82.88 -0.56 1.11 16 8 C -0.13 -1.19 9.54 -39.42 -0.38 -1.56 16 9 C -0.04 -0.26 9.92 -39.28 -0.39 -0.65 16 10 C -0.16 -1.31 5.75 -106.74 -0.61 -1.93 16 11 C 0.16 1.14 11.05 -16.99 -0.19 0.95 16 12 N -0.48 -4.23 10.30 -13.18 -0.14 -4.37 16 13 C 0.09 0.69 11.06 -17.99 -0.20 0.49 16 14 C -0.13 -1.16 10.08 -39.32 -0.40 -1.56 16 15 C 0.15 1.59 6.63 -84.86 -0.56 1.03 16 16 N -0.45 -5.17 9.50 -7.49 -0.07 -5.24 16 17 C -0.14 -2.29 3.67 -89.97 -0.33 -2.62 16 18 C 0.13 2.50 7.33 -8.50 -0.06 2.44 16 19 N -0.62 -15.40 3.62 -184.59 -0.67 -16.06 16 20 C -0.30 -8.85 11.03 -15.06 -0.17 -9.01 16 21 H 0.08 2.48 8.06 -52.48 -0.42 2.06 16 22 C -0.02 -0.70 5.50 -17.43 -0.10 -0.80 16 23 N -0.93 -29.71 13.70 55.49 0.76 -28.95 16 24 Si 1.06 27.18 25.50 -169.99 -4.34 22.85 16 25 H -0.29 -7.23 6.97 56.52 0.39 -6.84 16 26 H -0.28 -6.77 5.66 56.52 0.32 -6.45 16 27 H -0.29 -7.62 7.11 56.52 0.40 -7.22 16 28 C 0.11 2.27 5.18 -8.37 -0.04 2.22 16 29 H 0.07 0.83 7.48 -51.93 -0.39 0.44 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.41 4.93 7.91 -40.82 -0.32 4.61 16 33 H 0.16 1.27 7.60 -52.49 -0.40 0.87 16 34 H 0.15 0.45 8.06 -52.49 -0.42 0.03 16 35 H 0.17 0.60 8.06 -52.49 -0.42 0.18 16 36 H 0.16 0.84 8.06 -52.49 -0.42 0.42 16 37 H 0.15 1.11 8.06 -52.49 -0.42 0.69 16 38 H 0.10 1.56 8.14 -51.93 -0.42 1.14 16 39 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.04 0.68 8.10 -51.93 -0.42 0.26 16 41 H 0.26 8.20 8.73 -40.82 -0.36 7.84 16 42 H 0.05 0.95 6.81 -51.93 -0.35 0.60 16 43 H 0.05 1.11 6.22 -51.93 -0.32 0.78 16 LS Contribution 359.43 15.07 5.42 5.42 Total: -1.00 -35.70 359.43 -8.76 -44.46 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: -5.64 Total: 1.40 kcal Atomic # 6 Polarization: 1.91 SS G_CDS: -3.90 Total: -1.99 kcal Atomic # 7 Polarization: -63.55 SS G_CDS: -0.39 Total: -63.95 kcal Atomic # 8 Polarization: -8.28 SS G_CDS: 0.09 Total: -8.19 kcal Atomic # 14 Polarization: 27.18 SS G_CDS: -4.34 Total: 22.85 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -35.70 -8.76 -44.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970492270.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.611 kcal (2) G-P(sol) polarization free energy of solvation -35.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.459 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds