Wall clock time and date at job start Tue Mar 31 2020 14:59:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08994 * 109.47451 * 2 1 4 4 N 1.46496 * 109.46542 * 240.00029 * 2 1 3 5 5 C 1.34771 * 120.00190 * 85.00795 * 4 2 1 6 6 O 1.21541 * 120.00054 * 359.97438 * 5 4 2 7 7 C 1.47875 * 120.00145 * 179.97438 * 5 4 2 8 8 C 1.38953 * 121.42109 * 354.26132 * 7 5 4 9 9 N 1.32576 * 120.33530 * 179.80381 * 8 7 5 10 10 N 1.28384 * 123.43418 * 0.47635 * 9 8 7 11 11 C 1.33458 * 121.85643 * 359.76832 * 10 9 8 12 12 C 1.40585 * 121.74256 * 179.97438 * 11 10 9 13 13 C 1.36116 * 119.60973 * 180.02562 * 12 11 10 14 14 C 1.39378 * 121.12839 * 359.95986 * 13 12 11 15 15 C 1.36335 * 120.88920 * 0.02562 * 14 13 12 16 16 C 1.39856 * 119.49780 * 0.02562 * 15 14 13 17 17 C 1.53005 * 109.46711 * 120.00145 * 2 1 3 18 18 C 1.53495 * 114.20538 * 299.99541 * 17 2 1 19 19 N 1.47068 * 87.98406 * 220.34759 * 18 17 2 20 20 C 1.36931 * 136.05922 * 207.08931 * 19 18 17 21 21 H 1.07996 * 120.00235 * 7.82723 * 20 19 18 22 22 C 1.38820 * 120.00247 * 187.83270 * 20 19 18 23 23 N 1.31618 * 120.00001 * 195.12888 * 22 20 19 24 24 Si 1.86803 * 119.99770 * 15.12337 * 22 20 19 25 25 H 1.48501 * 109.46721 * 270.00277 * 24 22 20 26 26 H 1.48492 * 109.46859 * 30.00170 * 24 22 20 27 27 H 1.48498 * 109.46881 * 150.00648 * 24 22 20 28 28 C 1.47070 * 87.88610 * 27.34305 * 19 18 17 29 29 H 1.08995 * 109.46734 * 59.99446 * 1 2 3 30 30 H 1.08994 * 109.47451 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46655 * 300.00037 * 1 2 3 32 32 H 0.97004 * 119.99954 * 264.99409 * 4 2 1 33 33 H 1.07997 * 119.82796 * 0.02562 * 8 7 5 34 34 H 1.07996 * 120.19461 * 0.07215 * 12 11 10 35 35 H 1.07998 * 119.43594 * 179.97438 * 13 12 11 36 36 H 1.08004 * 119.55369 * 180.02562 * 14 13 12 37 37 H 1.07999 * 120.24953 * 179.97438 * 15 14 13 38 38 H 1.09003 * 113.41419 * 73.20397 * 17 2 1 39 39 H 1.09001 * 113.46424 * 105.57231 * 18 17 2 40 40 H 1.08995 * 113.52270 * 335.13207 * 18 17 2 41 41 H 0.96999 * 120.00137 * 354.92501 * 23 22 20 42 42 H 1.09003 * 113.46548 * 87.43779 * 28 19 18 43 43 H 1.08997 * 113.47224 * 217.87718 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1471 -0.0183 -2.3571 6 8 1.8578 1.1609 -2.4118 7 6 2.6404 -0.7153 -3.5644 8 6 3.0904 -2.0287 -3.5095 9 7 3.5246 -2.6342 -4.6061 10 7 3.5678 -2.0673 -5.7572 11 6 3.1675 -0.8069 -5.9370 12 6 3.2163 -0.1882 -7.1985 13 6 2.7974 1.0999 -7.3325 14 6 2.3186 1.8193 -6.2390 15 6 2.2565 1.2520 -5.0008 16 6 2.6798 -0.0696 -4.8269 17 6 2.0400 -0.7213 1.2493 18 6 1.5899 -0.0846 2.5714 19 7 2.9390 -0.3446 3.0959 20 6 3.4926 -0.5605 4.3296 21 1 2.8558 -0.6864 5.1927 22 6 4.8724 -0.6174 4.4710 23 7 5.4015 -1.1122 5.5699 24 14 5.9781 0.0079 3.1014 25 1 6.2775 -1.1019 2.1612 26 1 5.2906 1.1032 2.3714 27 1 7.2452 0.5195 3.6828 28 6 3.4330 -0.2644 1.7130 29 1 -0.3632 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3632 0.5138 0.8900 32 1 2.2490 -1.6318 -1.1526 33 1 3.0832 -2.5602 -2.5694 34 1 3.5833 -0.7321 -8.0563 35 1 2.8365 1.5726 -8.3028 36 1 1.9924 2.8400 -6.3743 37 1 1.8841 1.8191 -4.1606 38 1 1.9118 -1.8030 1.2076 39 1 0.8096 -0.6494 3.0816 40 1 1.3546 0.9762 2.4855 41 1 4.8300 -1.3687 6.3104 42 1 3.6839 0.7491 1.3998 43 1 4.2228 -0.9822 1.4918 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970493536.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:59:30 Heat of formation + Delta-G solvation = 112.153010 kcal Electronic energy + Delta-G solvation = -26826.508611 eV Core-core repulsion = 23067.715867 eV Total energy + Delta-G solvation = -3758.792744 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.88125 -40.05296 -38.67200 -38.22912 -35.34166 -34.14401 -32.51942 -32.01820 -31.33064 -30.20744 -27.83536 -26.41975 -25.33813 -24.74769 -24.07205 -23.12803 -21.43468 -20.93471 -19.64375 -18.97679 -18.55320 -17.92607 -17.50150 -16.41010 -15.99278 -15.81294 -15.57969 -15.28027 -15.18290 -14.83538 -14.35815 -13.94203 -13.93411 -13.79024 -13.32013 -13.08746 -12.88305 -12.77111 -12.41317 -12.27545 -12.00535 -11.90983 -11.62325 -11.27277 -11.10177 -11.01074 -10.79258 -10.73241 -10.46154 -10.10209 -9.79450 -9.72483 -9.57704 -9.28766 -9.20880 -8.78906 -8.73474 -7.23115 -6.34457 -3.27043 -0.69778 0.21497 1.18832 2.25713 2.68881 2.70964 3.37713 3.45517 3.54422 3.55430 3.59513 3.85608 3.98364 4.07140 4.35046 4.50944 4.55275 4.59597 4.69139 4.76696 4.80535 4.97281 5.05863 5.15376 5.30952 5.35583 5.38438 5.44189 5.56107 5.64186 5.70457 5.74370 5.84331 5.90269 5.95131 6.04827 6.15883 6.18897 6.22567 6.29982 6.32701 6.41845 6.83931 7.07924 7.16652 7.83025 8.18479 8.20025 8.93300 9.46489 10.32471 11.15433 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.017638 B = 0.002942 C = 0.002789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1587.056455 B = 9515.277707 C =10037.113420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.151 3.849 3 H 0.094 0.906 4 N -0.706 5.706 5 C 0.566 3.434 6 O -0.524 6.524 7 C -0.108 4.108 8 C 0.049 3.951 9 N -0.222 5.222 10 N -0.186 5.186 11 C 0.058 3.942 12 C -0.081 4.081 13 C -0.096 4.096 14 C -0.093 4.093 15 C -0.107 4.107 16 C -0.024 4.024 17 C -0.141 4.141 18 C 0.131 3.869 19 N -0.624 5.624 20 C -0.306 4.306 21 H 0.082 0.918 22 C -0.023 4.023 23 N -0.931 5.931 24 Si 1.061 2.939 25 H -0.293 1.293 26 H -0.282 1.282 27 H -0.294 1.294 28 C 0.107 3.893 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.072 0.928 32 H 0.402 0.598 33 H 0.177 0.823 34 H 0.145 0.855 35 H 0.137 0.863 36 H 0.136 0.864 37 H 0.173 0.827 38 H 0.100 0.900 39 H 0.048 0.952 40 H 0.038 0.962 41 H 0.262 0.738 42 H 0.045 0.955 43 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.628 3.062 -26.017 27.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.047 3.953 3 H 0.112 0.888 4 N -0.356 5.356 5 C 0.351 3.649 6 O -0.401 6.401 7 C -0.123 4.123 8 C -0.104 4.104 9 N -0.075 5.075 10 N -0.041 5.041 11 C -0.071 4.071 12 C -0.102 4.102 13 C -0.117 4.117 14 C -0.113 4.113 15 C -0.125 4.125 16 C -0.033 4.033 17 C -0.161 4.161 18 C 0.004 3.996 19 N -0.351 5.351 20 C -0.433 4.433 21 H 0.100 0.900 22 C -0.222 4.222 23 N -0.573 5.573 24 Si 0.892 3.108 25 H -0.221 1.221 26 H -0.209 1.209 27 H -0.222 1.222 28 C -0.019 4.019 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.091 0.909 32 H 0.237 0.763 33 H 0.194 0.806 34 H 0.163 0.837 35 H 0.155 0.845 36 H 0.154 0.846 37 H 0.190 0.810 38 H 0.118 0.882 39 H 0.066 0.934 40 H 0.055 0.945 41 H 0.072 0.928 42 H 0.063 0.937 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -7.560 2.663 -26.779 27.953 hybrid contribution -1.950 0.685 1.239 2.410 sum -9.510 3.348 -25.539 27.457 Atomic orbital electron populations 1.22128 0.94758 1.02261 1.02573 1.21156 0.94198 0.97576 0.82346 0.88760 1.46063 1.65872 1.14247 1.09436 1.17750 0.78163 0.86434 0.82561 1.90625 1.50346 1.15122 1.84049 1.21185 1.00916 0.95537 0.94693 1.24353 0.94181 0.92026 0.99823 1.73062 1.10289 1.29407 0.94696 1.73614 1.08343 1.07295 1.14853 1.20393 0.98981 0.92801 0.94931 1.20795 0.99223 0.94982 0.95154 1.21140 0.96800 0.94038 0.99716 1.21318 0.96967 1.00646 0.92352 1.21953 0.97414 0.93338 0.99786 1.18702 0.96781 0.95852 0.91946 1.23583 0.99307 1.00382 0.92833 1.22275 0.90473 0.97023 0.89791 1.46185 1.03965 1.83153 1.01838 1.20129 0.92128 1.47296 0.83711 0.90008 1.25769 0.94364 0.99149 1.02944 1.70900 1.37666 1.42586 1.06112 0.83791 0.75778 0.76672 0.74519 1.22106 1.20855 1.22175 1.22757 0.94525 0.98431 0.86171 0.92460 0.92354 0.90906 0.76294 0.80566 0.83677 0.84467 0.84581 0.80957 0.88202 0.93392 0.94470 0.92804 0.93712 0.93101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.71 9.29 37.16 0.35 -1.37 16 2 C 0.15 1.89 2.47 -67.92 -0.17 1.72 16 3 H 0.09 1.34 7.32 -51.93 -0.38 0.96 16 4 N -0.71 -7.65 5.04 -54.74 -0.28 -7.92 16 5 C 0.57 6.82 7.73 -12.32 -0.10 6.72 16 6 O -0.52 -7.43 13.32 5.33 0.07 -7.36 16 7 C -0.11 -1.22 5.95 -104.30 -0.62 -1.84 16 8 C 0.05 0.51 10.80 -16.97 -0.18 0.32 16 9 N -0.22 -2.76 11.47 30.73 0.35 -2.41 16 10 N -0.19 -2.33 11.52 32.21 0.37 -1.96 16 11 C 0.06 0.65 6.69 -84.87 -0.57 0.08 16 12 C -0.08 -0.65 10.01 -39.46 -0.40 -1.05 16 13 C -0.10 -0.61 9.94 -39.92 -0.40 -1.01 16 14 C -0.09 -0.68 9.96 -39.84 -0.40 -1.08 16 15 C -0.11 -1.08 9.28 -39.66 -0.37 -1.45 16 16 C -0.02 -0.27 5.77 -106.50 -0.61 -0.88 16 17 C -0.14 -2.13 3.67 -89.97 -0.33 -2.46 16 18 C 0.13 2.39 7.33 -8.50 -0.06 2.32 16 19 N -0.62 -14.86 3.62 -184.57 -0.67 -15.53 16 20 C -0.31 -8.71 11.03 -15.06 -0.17 -8.88 16 21 H 0.08 2.45 8.06 -52.49 -0.42 2.02 16 22 C -0.02 -0.68 5.50 -17.43 -0.10 -0.77 16 23 N -0.93 -29.25 13.70 55.49 0.76 -28.49 16 24 Si 1.06 26.58 25.50 -169.99 -4.34 22.24 16 25 H -0.29 -7.01 6.97 56.52 0.39 -6.62 16 26 H -0.28 -6.61 5.65 56.52 0.32 -6.29 16 27 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 28 C 0.11 2.13 5.18 -8.36 -0.04 2.09 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.07 0.77 7.48 -51.93 -0.39 0.38 16 32 H 0.40 3.40 6.79 -40.82 -0.28 3.12 16 33 H 0.18 1.28 6.56 -52.49 -0.34 0.93 16 34 H 0.15 0.87 8.06 -52.49 -0.42 0.45 16 35 H 0.14 0.44 8.06 -52.49 -0.42 0.02 16 36 H 0.14 0.65 8.06 -52.48 -0.42 0.23 16 37 H 0.17 1.93 5.14 -52.49 -0.27 1.66 16 38 H 0.10 1.40 8.14 -51.93 -0.42 0.98 16 39 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.04 0.65 8.10 -51.93 -0.42 0.23 16 41 H 0.26 8.11 8.73 -40.82 -0.36 7.75 16 42 H 0.05 0.91 6.81 -51.93 -0.35 0.56 16 43 H 0.05 1.05 6.22 -51.93 -0.32 0.73 16 LS Contribution 352.46 15.07 5.31 5.31 Total: -1.00 -34.89 352.46 -7.95 -42.84 By element: Atomic # 1 Polarization: 6.18 SS G_CDS: -5.38 Total: 0.80 kcal Atomic # 6 Polarization: -3.37 SS G_CDS: -4.16 Total: -7.53 kcal Atomic # 7 Polarization: -56.85 SS G_CDS: 0.54 Total: -56.31 kcal Atomic # 8 Polarization: -7.43 SS G_CDS: 0.07 Total: -7.36 kcal Atomic # 14 Polarization: 26.58 SS G_CDS: -4.34 Total: 22.24 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -34.89 -7.95 -42.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970493536.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.993 kcal (2) G-P(sol) polarization free energy of solvation -34.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.840 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds