Wall clock time and date at job start Tue Mar 31 2020 14:59:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08994 * 109.47451 * 2 1 4 4 N 1.46496 * 109.46542 * 240.00029 * 2 1 3 5 5 C 1.34771 * 120.00190 * 85.00795 * 4 2 1 6 6 O 1.21541 * 120.00054 * 359.97438 * 5 4 2 7 7 C 1.47875 * 120.00145 * 179.97438 * 5 4 2 8 8 C 1.38953 * 121.42109 * 354.26132 * 7 5 4 9 9 N 1.32576 * 120.33530 * 179.80381 * 8 7 5 10 10 N 1.28384 * 123.43418 * 0.47635 * 9 8 7 11 11 C 1.33458 * 121.85643 * 359.76832 * 10 9 8 12 12 C 1.40585 * 121.74256 * 179.97438 * 11 10 9 13 13 C 1.36116 * 119.60973 * 180.02562 * 12 11 10 14 14 C 1.39378 * 121.12839 * 359.95986 * 13 12 11 15 15 C 1.36335 * 120.88920 * 0.02562 * 14 13 12 16 16 C 1.39856 * 119.49780 * 0.02562 * 15 14 13 17 17 C 1.53005 * 109.46711 * 120.00145 * 2 1 3 18 18 C 1.53495 * 114.20538 * 299.99541 * 17 2 1 19 19 N 1.47068 * 87.98406 * 220.34759 * 18 17 2 20 20 C 1.36931 * 136.05922 * 207.08931 * 19 18 17 21 21 H 1.07996 * 120.00235 * 7.82723 * 20 19 18 22 22 C 1.38820 * 120.00247 * 187.83270 * 20 19 18 23 23 N 1.31618 * 120.00001 * 195.12888 * 22 20 19 24 24 Si 1.86803 * 119.99770 * 15.12337 * 22 20 19 25 25 H 1.48501 * 109.46721 * 270.00277 * 24 22 20 26 26 H 1.48492 * 109.46859 * 30.00170 * 24 22 20 27 27 H 1.48498 * 109.46881 * 150.00648 * 24 22 20 28 28 C 1.47070 * 87.88610 * 27.34305 * 19 18 17 29 29 H 1.08995 * 109.46734 * 59.99446 * 1 2 3 30 30 H 1.08994 * 109.47451 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46655 * 300.00037 * 1 2 3 32 32 H 0.97004 * 119.99954 * 264.99409 * 4 2 1 33 33 H 1.07997 * 119.82796 * 0.02562 * 8 7 5 34 34 H 1.07996 * 120.19461 * 0.07215 * 12 11 10 35 35 H 1.07998 * 119.43594 * 179.97438 * 13 12 11 36 36 H 1.08004 * 119.55369 * 180.02562 * 14 13 12 37 37 H 1.07999 * 120.24953 * 179.97438 * 15 14 13 38 38 H 1.09003 * 113.41419 * 73.20397 * 17 2 1 39 39 H 1.09001 * 113.46424 * 105.57231 * 18 17 2 40 40 H 1.08995 * 113.52270 * 335.13207 * 18 17 2 41 41 H 0.96999 * 120.00137 * 354.92501 * 23 22 20 42 42 H 1.09003 * 113.46548 * 87.43779 * 28 19 18 43 43 H 1.08997 * 113.47224 * 217.87718 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1471 -0.0183 -2.3571 6 8 1.8578 1.1609 -2.4118 7 6 2.6404 -0.7153 -3.5644 8 6 3.0904 -2.0287 -3.5095 9 7 3.5246 -2.6342 -4.6061 10 7 3.5678 -2.0673 -5.7572 11 6 3.1675 -0.8069 -5.9370 12 6 3.2163 -0.1882 -7.1985 13 6 2.7974 1.0999 -7.3325 14 6 2.3186 1.8193 -6.2390 15 6 2.2565 1.2520 -5.0008 16 6 2.6798 -0.0696 -4.8269 17 6 2.0400 -0.7213 1.2493 18 6 1.5899 -0.0846 2.5714 19 7 2.9390 -0.3446 3.0959 20 6 3.4926 -0.5605 4.3296 21 1 2.8558 -0.6864 5.1927 22 6 4.8724 -0.6174 4.4710 23 7 5.4015 -1.1122 5.5699 24 14 5.9781 0.0079 3.1014 25 1 6.2775 -1.1019 2.1612 26 1 5.2906 1.1032 2.3714 27 1 7.2452 0.5195 3.6828 28 6 3.4330 -0.2644 1.7130 29 1 -0.3632 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3632 0.5138 0.8900 32 1 2.2490 -1.6318 -1.1526 33 1 3.0832 -2.5602 -2.5694 34 1 3.5833 -0.7321 -8.0563 35 1 2.8365 1.5726 -8.3028 36 1 1.9924 2.8400 -6.3743 37 1 1.8841 1.8191 -4.1606 38 1 1.9118 -1.8030 1.2076 39 1 0.8096 -0.6494 3.0816 40 1 1.3546 0.9762 2.4855 41 1 4.8300 -1.3687 6.3104 42 1 3.6839 0.7491 1.3998 43 1 4.2228 -0.9822 1.4918 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970493536.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:59:29 Heat of formation + Delta-G solvation = 87.144983 kcal Electronic energy + Delta-G solvation = -26827.593041 eV Core-core repulsion = 23067.715867 eV Total energy + Delta-G solvation = -3759.877173 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.65647 -41.12379 -40.01224 -38.91260 -36.47599 -34.98017 -34.51172 -32.73139 -32.34133 -31.06333 -29.50850 -27.36249 -26.74645 -25.46788 -25.38871 -24.07094 -22.72177 -21.94065 -21.08529 -19.69896 -19.57468 -19.31257 -18.79188 -17.44954 -17.03450 -16.68863 -16.66042 -16.28423 -16.06090 -15.96407 -15.64112 -15.37603 -15.22147 -14.77773 -14.64195 -14.29567 -13.65003 -13.53327 -13.45531 -13.32199 -13.21609 -13.11138 -12.86681 -12.63405 -12.51063 -12.05596 -11.89575 -11.86870 -11.73636 -11.55669 -11.45877 -11.04746 -10.85907 -10.58399 -10.47444 -10.24939 -9.47232 -9.25028 -8.62829 -5.47274 -1.46421 -0.49351 0.49400 1.36141 1.46484 1.47656 1.62077 1.78208 1.93753 2.50300 2.81266 2.82947 3.00189 3.10012 3.14701 3.23053 3.30506 3.49503 3.67155 3.82037 3.90584 4.09917 4.18947 4.19864 4.33707 4.38011 4.46120 4.47347 4.60996 4.66643 4.69921 4.73362 4.78029 4.85514 4.96044 4.98905 5.09189 5.20362 5.25274 5.28361 5.32287 5.42239 5.50697 5.70997 5.95326 6.30297 6.69552 6.95626 7.32880 7.37939 8.27780 8.88706 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.017638 B = 0.002942 C = 0.002789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1587.056455 B = 9515.277707 C =10037.113420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.162 3.838 3 H 0.080 0.920 4 N -0.698 5.698 5 C 0.570 3.430 6 O -0.548 6.548 7 C -0.121 4.121 8 C 0.052 3.948 9 N -0.250 5.250 10 N -0.205 5.205 11 C 0.042 3.958 12 C -0.087 4.087 13 C -0.083 4.083 14 C -0.074 4.074 15 C -0.136 4.136 16 C -0.037 4.037 17 C -0.104 4.104 18 C 0.128 3.872 19 N -0.659 5.659 20 C -0.290 4.290 21 H 0.051 0.949 22 C -0.084 4.084 23 N -0.970 5.970 24 Si 1.099 2.901 25 H -0.275 1.275 26 H -0.259 1.259 27 H -0.304 1.304 28 C 0.096 3.904 29 H 0.055 0.945 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.414 0.586 33 H 0.204 0.796 34 H 0.165 0.835 35 H 0.179 0.821 36 H 0.166 0.834 37 H 0.160 0.840 38 H 0.118 0.882 39 H 0.056 0.944 40 H 0.052 0.948 41 H 0.247 0.753 42 H 0.047 0.953 43 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.722 3.946 -29.664 31.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.057 3.943 3 H 0.098 0.902 4 N -0.350 5.350 5 C 0.356 3.644 6 O -0.427 6.427 7 C -0.136 4.136 8 C -0.100 4.100 9 N -0.102 5.102 10 N -0.059 5.059 11 C -0.088 4.088 12 C -0.108 4.108 13 C -0.104 4.104 14 C -0.094 4.094 15 C -0.154 4.154 16 C -0.047 4.047 17 C -0.124 4.124 18 C 0.003 3.997 19 N -0.387 5.387 20 C -0.417 4.417 21 H 0.069 0.931 22 C -0.276 4.276 23 N -0.615 5.615 24 Si 0.925 3.075 25 H -0.202 1.202 26 H -0.184 1.184 27 H -0.232 1.232 28 C -0.028 4.028 29 H 0.074 0.926 30 H 0.092 0.908 31 H 0.094 0.906 32 H 0.252 0.748 33 H 0.221 0.779 34 H 0.182 0.818 35 H 0.196 0.804 36 H 0.184 0.816 37 H 0.177 0.823 38 H 0.136 0.864 39 H 0.074 0.926 40 H 0.069 0.931 41 H 0.057 0.943 42 H 0.065 0.935 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -8.705 3.519 -30.470 31.884 hybrid contribution -1.754 0.512 2.280 2.922 sum -10.459 4.031 -28.190 30.336 Atomic orbital electron populations 1.22074 0.92977 1.03355 1.02706 1.20907 0.95376 0.96387 0.81628 0.90234 1.45908 1.65622 1.14811 1.08622 1.17805 0.77678 0.86089 0.82843 1.90622 1.51415 1.16168 1.84461 1.21131 1.02039 0.95963 0.94515 1.24685 0.93224 0.91850 1.00282 1.72986 1.11710 1.30234 0.95233 1.73504 1.08942 1.08209 1.15265 1.20758 0.99418 0.92509 0.96151 1.21165 0.99196 0.95877 0.94551 1.21589 0.94576 0.93127 1.01067 1.21756 0.94416 1.01808 0.91391 1.21917 0.99524 0.93135 1.00831 1.18952 0.96948 0.96555 0.92215 1.23261 0.95162 1.01339 0.92608 1.22506 0.88152 0.98211 0.90870 1.46298 1.06984 1.83744 1.01673 1.19997 0.91887 1.44803 0.85063 0.93069 1.26979 0.96387 0.99849 1.04398 1.71001 1.37723 1.45811 1.06988 0.83320 0.73969 0.77394 0.72808 1.20153 1.18427 1.23231 1.22972 0.97133 0.98560 0.84170 0.92589 0.90800 0.90554 0.74780 0.77942 0.81773 0.80377 0.81608 0.82325 0.86381 0.92580 0.93060 0.94327 0.93538 0.93578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.83 9.29 71.99 0.67 -2.16 16 2 C 0.16 3.60 2.47 45.00 0.11 3.71 16 3 H 0.08 2.09 7.32 -2.39 -0.02 2.07 16 4 N -0.70 -13.46 5.04 -445.39 -2.24 -15.70 16 5 C 0.57 12.95 7.73 86.80 0.67 13.62 16 6 O -0.55 -15.02 13.32 -3.84 -0.05 -15.07 16 7 C -0.12 -2.63 5.95 -19.66 -0.12 -2.75 16 8 C 0.05 1.04 10.80 84.75 0.92 1.95 16 9 N -0.25 -6.10 11.47 -56.68 -0.65 -6.75 16 10 N -0.21 -5.04 11.52 -52.00 -0.60 -5.64 16 11 C 0.04 0.89 6.69 40.38 0.27 1.16 16 12 C -0.09 -1.19 10.01 22.35 0.22 -0.97 16 13 C -0.08 -0.74 9.94 22.05 0.22 -0.52 16 14 C -0.07 -0.86 9.96 22.10 0.22 -0.64 16 15 C -0.14 -2.58 9.28 22.22 0.21 -2.37 16 16 C -0.04 -0.82 5.77 -21.08 -0.12 -0.95 16 17 C -0.10 -2.84 3.67 -10.37 -0.04 -2.88 16 18 C 0.13 4.38 7.33 83.18 0.61 4.99 16 19 N -0.66 -30.74 3.62 -737.86 -2.67 -33.41 16 20 C -0.29 -16.73 11.03 84.04 0.93 -15.80 16 21 H 0.05 3.18 8.06 -2.91 -0.02 3.16 16 22 C -0.08 -5.03 5.50 84.86 0.47 -4.56 16 23 N -0.97 -62.98 13.70 21.65 0.30 -62.68 16 24 Si 1.10 53.75 25.50 68.60 1.75 55.50 16 25 H -0.28 -12.50 6.97 99.48 0.69 -11.80 16 26 H -0.26 -11.52 5.65 99.48 0.56 -10.96 16 27 H -0.30 -15.25 7.11 99.48 0.71 -14.54 16 28 C 0.10 3.65 5.18 83.27 0.43 4.08 16 29 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.08 1.38 7.48 -2.39 -0.02 1.36 16 32 H 0.41 5.82 6.79 -92.71 -0.63 5.19 16 33 H 0.20 2.55 6.56 -2.91 -0.02 2.53 16 34 H 0.16 1.52 8.06 -2.91 -0.02 1.50 16 35 H 0.18 0.14 8.06 -2.91 -0.02 0.12 16 36 H 0.17 0.89 8.06 -2.91 -0.02 0.86 16 37 H 0.16 3.47 5.14 -2.91 -0.01 3.45 16 38 H 0.12 2.88 8.14 -2.39 -0.02 2.86 16 39 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 40 H 0.05 1.66 8.10 -2.39 -0.02 1.64 16 41 H 0.25 16.09 8.73 -92.71 -0.81 15.28 16 42 H 0.05 1.78 6.81 -2.39 -0.02 1.76 16 43 H 0.05 1.80 6.22 -2.39 -0.01 1.78 16 Total: -1.00 -79.26 352.46 1.73 -77.54 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: 0.23 Total: 10.30 kcal Atomic # 6 Polarization: -9.74 SS G_CDS: 5.66 Total: -4.08 kcal Atomic # 7 Polarization: -118.32 SS G_CDS: -5.87 Total: -124.19 kcal Atomic # 8 Polarization: -15.02 SS G_CDS: -0.05 Total: -15.07 kcal Atomic # 14 Polarization: 53.75 SS G_CDS: 1.75 Total: 55.50 kcal Total: -79.26 1.73 -77.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970493536.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.684 kcal (2) G-P(sol) polarization free energy of solvation -79.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.539 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds