Wall clock time and date at job start Tue Mar 31 2020 14:43:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.99938 * 2 1 4 4 C 1.54323 * 109.87970 * 121.09423 * 2 1 3 5 5 H 1.08995 * 110.87587 * 23.17758 * 4 2 1 6 6 N 1.46495 * 110.72207 * 259.97072 * 4 2 1 7 7 C 1.36941 * 120.00263 * 160.02546 * 6 4 2 8 8 H 1.08000 * 119.99712 * 0.02562 * 7 6 4 9 9 C 1.38810 * 120.00173 * 180.02562 * 7 6 4 10 10 N 1.31625 * 120.00022 * 179.97438 * 9 7 6 11 11 Si 1.86800 * 120.00070 * 359.97438 * 9 7 6 12 12 H 1.48496 * 109.47260 * 90.00081 * 11 9 7 13 13 H 1.48505 * 109.47209 * 210.00256 * 11 9 7 14 14 H 1.48499 * 109.47189 * 330.00156 * 11 9 7 15 15 C 1.55157 * 102.94177 * 141.61239 * 4 2 1 16 16 C 1.54918 * 101.58155 * 324.49419 * 15 4 2 17 17 N 1.47019 * 109.88029 * 238.90245 * 2 1 3 18 18 C 1.34771 * 125.65248 * 61.66659 * 17 2 1 19 19 O 1.21499 * 119.99812 * 359.97438 * 18 17 2 20 20 C 1.48352 * 120.00513 * 179.97438 * 18 17 2 21 21 C 1.40171 * 119.20160 * 179.73321 * 20 18 17 22 22 C 1.36624 * 119.69794 * 179.71698 * 21 20 18 23 23 C 1.40594 * 118.21072 * 0.53578 * 22 21 20 24 24 C 1.40739 * 121.36534 * 179.70018 * 23 22 21 25 25 C 1.36586 * 118.12755 * 180.02562 * 24 23 22 26 26 C 1.39428 * 119.84710 * 359.97438 * 25 24 23 27 27 N 1.31020 * 121.84267 * 0.02562 * 26 25 24 28 28 C 1.33863 * 121.42570 * 359.97438 * 27 26 25 29 29 N 1.31886 * 119.19750 * 359.97438 * 20 18 17 30 30 H 1.09003 * 109.47312 * 298.90743 * 1 2 3 31 31 H 1.09004 * 109.47322 * 58.90380 * 1 2 3 32 32 H 1.09000 * 109.47636 * 178.90411 * 1 2 3 33 33 H 0.97002 * 120.00155 * 340.02713 * 6 4 2 34 34 H 0.96997 * 119.99777 * 179.97438 * 10 9 7 35 35 H 1.09001 * 111.00846 * 82.57128 * 15 4 2 36 36 H 1.09000 * 111.00346 * 206.42659 * 15 4 2 37 37 H 1.08998 * 110.36791 * 155.84693 * 16 15 4 38 38 H 1.08991 * 110.36593 * 278.17392 * 16 15 4 39 39 H 1.07995 * 120.14764 * 359.97438 * 21 20 18 40 40 H 1.08003 * 120.89085 * 180.26448 * 22 21 20 41 41 H 1.08002 * 120.93430 * 0.02562 * 24 23 22 42 42 H 1.08001 * 120.07481 * 179.97438 * 25 24 23 43 43 H 1.07997 * 119.07722 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0242 0.0000 4 6 2.0547 -0.7495 1.2427 5 1 1.3064 -1.4458 1.6211 6 7 2.4554 0.1960 2.2875 7 6 2.5574 -0.2225 3.5874 8 1 2.3429 -1.2499 3.8422 9 6 2.9366 0.6735 4.5774 10 7 3.0341 0.2713 5.8269 11 14 3.3083 2.4503 4.1364 12 1 2.0638 3.2548 4.2319 13 1 4.3215 2.9922 5.0772 14 1 3.8352 2.5163 2.7496 15 6 3.2875 -1.5142 0.6925 16 6 2.8145 -1.8795 -0.7367 17 7 2.0299 -0.7141 -1.1839 18 6 1.8083 -0.3615 -2.4656 19 8 1.1435 0.6235 -2.7185 20 6 2.3759 -1.1762 -3.5679 21 6 2.1302 -0.7973 -4.8949 22 6 2.6529 -1.5368 -5.9178 23 6 3.4180 -2.6712 -5.5945 24 6 3.9823 -3.4838 -6.5954 25 6 4.7134 -4.5701 -6.2067 26 6 4.8813 -4.8441 -4.8499 27 7 4.3543 -4.0851 -3.9211 28 6 3.6267 -3.0053 -4.2317 29 7 3.0956 -2.2420 -3.2755 30 1 -0.3634 0.4968 0.8996 31 1 -0.3634 0.5308 -0.8800 32 1 -0.3634 -1.0274 -0.0197 33 1 2.6484 1.1187 2.0586 34 1 3.2994 0.8974 6.5186 35 1 4.1654 -0.8689 0.6605 36 1 3.4851 -2.4110 1.2797 37 1 3.6715 -2.0339 -1.3922 38 1 2.1886 -2.7715 -0.7127 39 1 1.5339 0.0776 -5.1076 40 1 2.4792 -1.2600 -6.9473 41 1 3.8413 -3.2549 -7.6414 42 1 5.1602 -5.2154 -6.9485 43 1 5.4621 -5.7060 -4.5565 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986294328.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:43:04 Heat of formation + Delta-G solvation = 73.156032 kcal Electronic energy + Delta-G solvation = -27071.859748 eV Core-core repulsion = 23311.375968 eV Total energy + Delta-G solvation = -3760.483780 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.65172 -40.06912 -38.20189 -37.26615 -34.66977 -34.12925 -32.03951 -31.38673 -31.22686 -30.79860 -29.48072 -26.05626 -25.26495 -24.67181 -23.09990 -22.78694 -22.40666 -20.51244 -19.78796 -18.93617 -17.83654 -17.52754 -17.39817 -16.42331 -16.14933 -15.60938 -15.31119 -14.91940 -14.62257 -14.54069 -14.18890 -14.01280 -13.68052 -13.54634 -13.28288 -12.87514 -12.71222 -12.53580 -12.30010 -12.20584 -11.94105 -11.80976 -11.52037 -11.34695 -11.17551 -10.95566 -10.72648 -10.52798 -10.27093 -10.10803 -9.93893 -9.59043 -9.37083 -9.31667 -9.25786 -8.88480 -8.43684 -7.28688 -5.77898 -3.14635 -0.33127 0.09868 1.45684 2.05464 2.83947 3.02182 3.30746 3.39235 3.42746 3.46968 3.78037 3.96165 4.15905 4.19119 4.31521 4.38894 4.59049 4.60590 4.84445 4.89803 5.07739 5.11291 5.21728 5.30037 5.39137 5.43801 5.57568 5.60013 5.68576 5.71863 5.74757 5.81658 5.93163 6.03822 6.10631 6.23360 6.39645 6.42044 6.55754 6.62347 6.67352 6.90235 6.92955 7.60970 7.69366 7.96822 8.12946 8.40712 9.17694 9.90257 10.08941 11.40015 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.020182 B = 0.002949 C = 0.002715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.072458 B = 9493.125892 C =10309.472780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.123 3.877 3 H 0.077 0.923 4 C 0.181 3.819 5 H 0.074 0.926 6 N -0.740 5.740 7 C -0.244 4.244 8 H 0.092 0.908 9 C 0.008 3.992 10 N -0.932 5.932 11 Si 0.882 3.118 12 H -0.283 1.283 13 H -0.291 1.291 14 H -0.277 1.277 15 C -0.157 4.157 16 C 0.100 3.900 17 N -0.581 5.581 18 C 0.575 3.425 19 O -0.534 6.534 20 C 0.154 3.846 21 C -0.129 4.129 22 C -0.048 4.048 23 C -0.145 4.145 24 C -0.046 4.046 25 C -0.175 4.175 26 C 0.159 3.841 27 N -0.456 5.456 28 C 0.299 3.701 29 N -0.426 5.426 30 H 0.072 0.928 31 H 0.062 0.938 32 H 0.054 0.946 33 H 0.362 0.638 34 H 0.260 0.740 35 H 0.072 0.928 36 H 0.080 0.920 37 H 0.102 0.898 38 H 0.066 0.934 39 H 0.157 0.843 40 H 0.149 0.851 41 H 0.144 0.856 42 H 0.144 0.856 43 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.414 -9.291 -29.715 31.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.019 3.981 3 H 0.095 0.905 4 C 0.070 3.930 5 H 0.092 0.908 6 N -0.382 5.382 7 C -0.374 4.374 8 H 0.110 0.890 9 C -0.188 4.188 10 N -0.579 5.579 11 Si 0.712 3.288 12 H -0.210 1.210 13 H -0.217 1.217 14 H -0.203 1.203 15 C -0.198 4.198 16 C -0.022 4.022 17 N -0.312 5.312 18 C 0.360 3.640 19 O -0.411 6.411 20 C -0.003 4.003 21 C -0.149 4.149 22 C -0.075 4.075 23 C -0.150 4.150 24 C -0.073 4.073 25 C -0.194 4.194 26 C -0.019 4.019 27 N -0.164 5.164 28 C 0.061 3.939 29 N -0.139 5.139 30 H 0.091 0.909 31 H 0.081 0.919 32 H 0.073 0.927 33 H 0.196 0.804 34 H 0.070 0.930 35 H 0.091 0.909 36 H 0.099 0.901 37 H 0.120 0.880 38 H 0.085 0.915 39 H 0.174 0.826 40 H 0.167 0.833 41 H 0.161 0.839 42 H 0.162 0.838 43 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 1.277 -9.258 -27.824 29.352 hybrid contribution 0.215 1.570 -1.959 2.519 sum 1.491 -7.688 -29.783 30.795 Atomic orbital electron populations 1.22068 0.94393 1.02098 1.02844 1.22006 0.94816 0.96725 0.84534 0.90470 1.21239 0.94204 0.91264 0.86301 0.90774 1.42702 1.82618 1.08272 1.04601 1.19027 1.39378 0.97313 0.81649 0.88972 1.24652 1.01425 0.97604 0.95166 1.69698 1.53989 1.34584 0.99633 0.86589 0.78108 0.86615 0.77471 1.20958 1.21705 1.20292 1.23577 1.00538 1.01849 0.93831 1.22784 0.96168 0.86931 0.96343 1.48441 1.50074 1.28461 1.04258 1.17454 0.81099 0.84147 0.81269 1.90775 1.40470 1.26782 1.83089 1.21534 0.93453 0.91628 0.93668 1.21845 1.00043 1.01475 0.91570 1.21456 0.93473 0.92132 1.00413 1.19754 1.01261 0.98192 0.95809 1.21500 0.93557 0.92953 0.99314 1.22070 1.00521 0.98809 0.98045 1.23179 0.93514 0.96683 0.88499 1.67672 1.07937 1.03385 1.37450 1.19374 0.95096 0.92861 0.86610 1.67848 1.07266 1.03765 1.34991 0.90903 0.91854 0.92664 0.80438 0.93000 0.90945 0.90095 0.87994 0.91547 0.82562 0.83285 0.83860 0.83784 0.81365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.53 9.10 37.16 0.34 -2.19 16 2 C 0.12 2.16 3.21 -66.96 -0.21 1.94 16 3 H 0.08 1.45 7.69 -51.93 -0.40 1.05 16 4 C 0.18 3.50 3.11 -66.10 -0.21 3.29 16 5 H 0.07 1.45 7.84 -51.93 -0.41 1.05 16 6 N -0.74 -17.36 5.05 -51.66 -0.26 -17.62 16 7 C -0.24 -6.77 10.46 -15.06 -0.16 -6.92 16 8 H 0.09 2.72 8.06 -52.49 -0.42 2.30 16 9 C 0.01 0.22 5.50 -17.43 -0.10 0.12 16 10 N -0.93 -29.09 13.97 55.49 0.78 -28.32 16 11 Si 0.88 22.19 27.74 -169.99 -4.71 17.48 16 12 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 13 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 14 H -0.28 -6.63 6.52 56.52 0.37 -6.26 16 15 C -0.16 -2.76 6.77 -24.58 -0.17 -2.93 16 16 C 0.10 1.56 5.93 -2.52 -0.01 1.55 16 17 N -0.58 -9.55 3.06 -163.93 -0.50 -10.05 16 18 C 0.57 9.23 7.64 -12.10 -0.09 9.14 16 19 O -0.53 -9.47 15.33 5.37 0.08 -9.39 16 20 C 0.15 2.10 6.73 -82.96 -0.56 1.54 16 21 C -0.13 -1.34 9.54 -39.44 -0.38 -1.71 16 22 C -0.05 -0.38 9.89 -39.28 -0.39 -0.77 16 23 C -0.15 -1.33 5.75 -106.68 -0.61 -1.95 16 24 C -0.05 -0.27 9.90 -39.23 -0.39 -0.66 16 25 C -0.17 -0.89 10.04 -39.74 -0.40 -1.29 16 26 C 0.16 1.16 11.14 -17.46 -0.19 0.96 16 27 N -0.46 -5.37 10.43 -12.59 -0.13 -5.50 16 28 C 0.30 3.72 7.62 -157.91 -1.20 2.52 16 29 N -0.43 -5.99 6.60 -9.19 -0.06 -6.05 16 30 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.06 1.04 6.90 -51.93 -0.36 0.68 16 32 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.36 8.49 5.37 -40.82 -0.22 8.27 16 34 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 35 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 36 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 37 H 0.10 1.61 5.87 -51.93 -0.30 1.30 16 38 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 39 H 0.16 1.45 7.60 -52.49 -0.40 1.05 16 40 H 0.15 0.59 8.06 -52.48 -0.42 0.17 16 41 H 0.14 0.36 8.06 -52.49 -0.42 -0.06 16 42 H 0.14 0.25 8.06 -52.49 -0.42 -0.17 16 43 H 0.17 0.67 8.06 -52.49 -0.42 0.25 16 LS Contribution 355.80 15.07 5.36 5.36 Total: -1.00 -34.77 355.80 -9.66 -44.44 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: -5.48 Total: 7.00 kcal Atomic # 6 Polarization: 7.39 SS G_CDS: -4.73 Total: 2.66 kcal Atomic # 7 Polarization: -67.37 SS G_CDS: -0.18 Total: -67.55 kcal Atomic # 8 Polarization: -9.47 SS G_CDS: 0.08 Total: -9.39 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -4.71 Total: 17.48 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -34.77 -9.66 -44.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986294328.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.594 kcal (2) G-P(sol) polarization free energy of solvation -34.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.438 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds