Wall clock time and date at job start Tue Mar 31 2020 14:43:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.99938 * 2 1 4 4 C 1.54323 * 109.87970 * 121.09423 * 2 1 3 5 5 H 1.08995 * 110.87587 * 23.17758 * 4 2 1 6 6 N 1.46495 * 110.72207 * 259.97072 * 4 2 1 7 7 C 1.36941 * 120.00263 * 160.02546 * 6 4 2 8 8 H 1.08000 * 119.99712 * 0.02562 * 7 6 4 9 9 C 1.38810 * 120.00173 * 180.02562 * 7 6 4 10 10 N 1.31625 * 120.00022 * 179.97438 * 9 7 6 11 11 Si 1.86800 * 120.00070 * 359.97438 * 9 7 6 12 12 H 1.48496 * 109.47260 * 90.00081 * 11 9 7 13 13 H 1.48505 * 109.47209 * 210.00256 * 11 9 7 14 14 H 1.48499 * 109.47189 * 330.00156 * 11 9 7 15 15 C 1.55157 * 102.94177 * 141.61239 * 4 2 1 16 16 C 1.54918 * 101.58155 * 324.49419 * 15 4 2 17 17 N 1.47019 * 109.88029 * 238.90245 * 2 1 3 18 18 C 1.34771 * 125.65248 * 61.66659 * 17 2 1 19 19 O 1.21499 * 119.99812 * 359.97438 * 18 17 2 20 20 C 1.48352 * 120.00513 * 179.97438 * 18 17 2 21 21 C 1.40171 * 119.20160 * 179.73321 * 20 18 17 22 22 C 1.36624 * 119.69794 * 179.71698 * 21 20 18 23 23 C 1.40594 * 118.21072 * 0.53578 * 22 21 20 24 24 C 1.40739 * 121.36534 * 179.70018 * 23 22 21 25 25 C 1.36586 * 118.12755 * 180.02562 * 24 23 22 26 26 C 1.39428 * 119.84710 * 359.97438 * 25 24 23 27 27 N 1.31020 * 121.84267 * 0.02562 * 26 25 24 28 28 C 1.33863 * 121.42570 * 359.97438 * 27 26 25 29 29 N 1.31886 * 119.19750 * 359.97438 * 20 18 17 30 30 H 1.09003 * 109.47312 * 298.90743 * 1 2 3 31 31 H 1.09004 * 109.47322 * 58.90380 * 1 2 3 32 32 H 1.09000 * 109.47636 * 178.90411 * 1 2 3 33 33 H 0.97002 * 120.00155 * 340.02713 * 6 4 2 34 34 H 0.96997 * 119.99777 * 179.97438 * 10 9 7 35 35 H 1.09001 * 111.00846 * 82.57128 * 15 4 2 36 36 H 1.09000 * 111.00346 * 206.42659 * 15 4 2 37 37 H 1.08998 * 110.36791 * 155.84693 * 16 15 4 38 38 H 1.08991 * 110.36593 * 278.17392 * 16 15 4 39 39 H 1.07995 * 120.14764 * 359.97438 * 21 20 18 40 40 H 1.08003 * 120.89085 * 180.26448 * 22 21 20 41 41 H 1.08002 * 120.93430 * 0.02562 * 24 23 22 42 42 H 1.08001 * 120.07481 * 179.97438 * 25 24 23 43 43 H 1.07997 * 119.07722 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0242 0.0000 4 6 2.0547 -0.7495 1.2427 5 1 1.3064 -1.4458 1.6211 6 7 2.4554 0.1960 2.2875 7 6 2.5574 -0.2225 3.5874 8 1 2.3429 -1.2499 3.8422 9 6 2.9366 0.6735 4.5774 10 7 3.0341 0.2713 5.8269 11 14 3.3083 2.4503 4.1364 12 1 2.0638 3.2548 4.2319 13 1 4.3215 2.9922 5.0772 14 1 3.8352 2.5163 2.7496 15 6 3.2875 -1.5142 0.6925 16 6 2.8145 -1.8795 -0.7367 17 7 2.0299 -0.7141 -1.1839 18 6 1.8083 -0.3615 -2.4656 19 8 1.1435 0.6235 -2.7185 20 6 2.3759 -1.1762 -3.5679 21 6 2.1302 -0.7973 -4.8949 22 6 2.6529 -1.5368 -5.9178 23 6 3.4180 -2.6712 -5.5945 24 6 3.9823 -3.4838 -6.5954 25 6 4.7134 -4.5701 -6.2067 26 6 4.8813 -4.8441 -4.8499 27 7 4.3543 -4.0851 -3.9211 28 6 3.6267 -3.0053 -4.2317 29 7 3.0956 -2.2420 -3.2755 30 1 -0.3634 0.4968 0.8996 31 1 -0.3634 0.5308 -0.8800 32 1 -0.3634 -1.0274 -0.0197 33 1 2.6484 1.1187 2.0586 34 1 3.2994 0.8974 6.5186 35 1 4.1654 -0.8689 0.6605 36 1 3.4851 -2.4110 1.2797 37 1 3.6715 -2.0339 -1.3922 38 1 2.1886 -2.7715 -0.7127 39 1 1.5339 0.0776 -5.1076 40 1 2.4792 -1.2600 -6.9473 41 1 3.8413 -3.2549 -7.6414 42 1 5.1602 -5.2154 -6.9485 43 1 5.4621 -5.7060 -4.5565 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986294328.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:43:03 Heat of formation + Delta-G solvation = 50.103342 kcal Electronic energy + Delta-G solvation = -27072.859388 eV Core-core repulsion = 23311.375968 eV Total energy + Delta-G solvation = -3761.483419 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.40018 -41.24667 -39.27235 -38.36823 -36.12567 -35.17733 -33.64806 -32.56747 -32.12040 -31.94703 -31.00573 -27.06351 -26.75605 -25.38031 -24.51849 -23.97556 -23.45306 -21.95901 -21.10198 -19.68515 -19.58675 -18.76066 -18.13022 -17.64964 -17.17884 -16.60159 -16.52954 -16.01612 -15.83852 -15.74997 -15.33229 -15.16249 -14.81980 -14.67183 -14.48470 -14.21630 -13.98183 -13.83278 -13.54506 -13.42189 -13.16807 -13.06075 -12.86683 -12.72702 -12.60112 -12.22529 -12.14905 -12.09230 -11.83623 -11.80172 -11.48083 -11.16994 -10.95050 -10.11314 -10.02528 -9.90571 -9.72734 -9.33763 -8.03042 -5.37659 -1.00463 -0.54750 0.83316 1.25798 1.37960 1.39454 1.46168 1.67634 2.09006 2.46999 2.49682 3.05088 3.22400 3.30057 3.38168 3.47012 3.62219 3.64237 3.73708 3.90526 3.94415 4.04278 4.08852 4.23073 4.28555 4.33605 4.44568 4.47751 4.62715 4.66635 4.76421 4.82222 4.94727 4.97633 5.03015 5.13956 5.15810 5.18360 5.20651 5.30625 5.35310 5.62313 5.75893 6.16883 6.20231 6.34964 6.83632 7.03942 7.08526 7.78025 7.97298 9.17958 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.020182 B = 0.002949 C = 0.002715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.072458 B = 9493.125892 C =10309.472780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.128 3.872 3 H 0.065 0.935 4 C 0.176 3.824 5 H 0.072 0.928 6 N -0.742 5.742 7 C -0.226 4.226 8 H 0.064 0.936 9 C -0.058 4.058 10 N -0.980 5.980 11 Si 0.948 3.052 12 H -0.278 1.278 13 H -0.295 1.295 14 H -0.258 1.258 15 C -0.150 4.150 16 C 0.119 3.881 17 N -0.587 5.587 18 C 0.573 3.427 19 O -0.557 6.557 20 C 0.128 3.872 21 C -0.144 4.144 22 C -0.023 4.023 23 C -0.154 4.154 24 C -0.041 4.041 25 C -0.162 4.162 26 C 0.159 3.841 27 N -0.509 5.509 28 C 0.267 3.733 29 N -0.457 5.457 30 H 0.070 0.930 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.364 0.636 34 H 0.258 0.742 35 H 0.061 0.939 36 H 0.081 0.919 37 H 0.104 0.896 38 H 0.072 0.928 39 H 0.162 0.838 40 H 0.198 0.802 41 H 0.188 0.812 42 H 0.188 0.812 43 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.143 -10.001 -34.541 36.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.025 3.975 3 H 0.083 0.917 4 C 0.067 3.933 5 H 0.090 0.910 6 N -0.385 5.385 7 C -0.357 4.357 8 H 0.082 0.918 9 C -0.249 4.249 10 N -0.630 5.630 11 Si 0.776 3.224 12 H -0.204 1.204 13 H -0.222 1.222 14 H -0.183 1.183 15 C -0.191 4.191 16 C -0.003 4.003 17 N -0.318 5.318 18 C 0.361 3.639 19 O -0.435 6.435 20 C -0.027 4.027 21 C -0.164 4.164 22 C -0.049 4.049 23 C -0.159 4.159 24 C -0.067 4.067 25 C -0.181 4.181 26 C -0.018 4.018 27 N -0.219 5.219 28 C 0.029 3.971 29 N -0.171 5.171 30 H 0.089 0.911 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.198 0.802 34 H 0.067 0.933 35 H 0.080 0.920 36 H 0.099 0.901 37 H 0.122 0.878 38 H 0.090 0.910 39 H 0.180 0.820 40 H 0.215 0.785 41 H 0.205 0.795 42 H 0.205 0.795 43 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 1.994 -9.984 -32.715 34.262 hybrid contribution 0.071 1.526 -0.640 1.656 sum 2.065 -8.457 -33.355 34.472 Atomic orbital electron populations 1.21980 0.93316 1.02576 1.02609 1.21781 0.95580 0.95836 0.84349 0.91674 1.21363 0.94890 0.90900 0.86145 0.91019 1.42659 1.82844 1.09040 1.03943 1.18972 1.37277 0.96018 0.83391 0.91753 1.25392 1.02419 1.02085 0.95045 1.69862 1.56202 1.36108 1.00858 0.85516 0.77863 0.81177 0.77860 1.20362 1.22183 1.18342 1.23435 0.99185 1.01296 0.95161 1.22603 0.96236 0.86829 0.94641 1.48458 1.50505 1.28537 1.04335 1.17941 0.80438 0.84058 0.81473 1.90738 1.41462 1.27830 1.83486 1.21202 0.95338 0.92288 0.93849 1.21930 1.01214 1.02473 0.90823 1.21952 0.90840 0.90335 1.01808 1.20061 1.01471 0.99102 0.95238 1.22025 0.92156 0.91994 1.00512 1.22545 0.99149 0.98736 0.97683 1.23866 0.92115 0.96334 0.89437 1.67632 1.09937 1.04552 1.39789 1.19617 0.96127 0.93392 0.87926 1.67562 1.08210 1.04419 1.36881 0.91132 0.91954 0.91844 0.80215 0.93294 0.92040 0.90052 0.87847 0.90998 0.82004 0.78543 0.79524 0.79465 0.78727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.80 9.10 71.98 0.65 -4.14 16 2 C 0.13 4.59 3.21 45.34 0.15 4.74 16 3 H 0.07 2.49 7.69 -2.39 -0.02 2.47 16 4 C 0.18 6.96 3.11 46.18 0.14 7.10 16 5 H 0.07 2.88 7.84 -2.39 -0.02 2.86 16 6 N -0.74 -35.26 5.05 -317.34 -1.60 -36.87 16 7 C -0.23 -12.83 10.46 84.03 0.88 -11.95 16 8 H 0.06 3.96 8.06 -2.91 -0.02 3.94 16 9 C -0.06 -3.42 5.50 84.86 0.47 -2.95 16 10 N -0.98 -63.01 13.97 21.65 0.30 -62.71 16 11 Si 0.95 46.47 27.74 68.60 1.90 48.38 16 12 H -0.28 -13.28 7.11 99.48 0.71 -12.58 16 13 H -0.30 -14.61 7.11 99.48 0.71 -13.91 16 14 H -0.26 -11.73 6.52 99.48 0.65 -11.08 16 15 C -0.15 -5.41 6.77 31.99 0.22 -5.19 16 16 C 0.12 3.82 5.93 86.86 0.52 4.33 16 17 N -0.59 -19.70 3.06 -790.86 -2.42 -22.13 16 18 C 0.57 18.82 7.64 86.94 0.66 19.49 16 19 O -0.56 -20.07 15.33 -3.71 -0.06 -20.13 16 20 C 0.13 3.53 6.73 42.30 0.28 3.82 16 21 C -0.14 -2.81 9.54 22.36 0.21 -2.60 16 22 C -0.02 -0.29 9.89 22.47 0.22 -0.06 16 23 C -0.15 -2.37 5.75 -21.20 -0.12 -2.50 16 24 C -0.04 -0.27 9.90 22.49 0.22 -0.05 16 25 C -0.16 -0.86 10.04 22.17 0.22 -0.64 16 26 C 0.16 1.89 11.14 85.10 0.95 2.83 16 27 N -0.51 -11.60 10.43 -193.76 -2.02 -13.62 16 28 C 0.27 6.47 7.62 135.12 1.03 7.49 16 29 N -0.46 -13.07 6.60 -182.97 -1.21 -14.27 16 30 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 31 H 0.06 2.05 6.90 -2.39 -0.02 2.03 16 32 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.36 17.00 5.37 -92.71 -0.50 16.50 16 34 H 0.26 15.85 8.31 -92.71 -0.77 15.08 16 35 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 36 H 0.08 2.90 8.14 -2.39 -0.02 2.88 16 37 H 0.10 3.37 5.87 -2.39 -0.01 3.36 16 38 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 39 H 0.16 2.85 7.60 -2.91 -0.02 2.83 16 40 H 0.20 0.44 8.06 -2.91 -0.02 0.42 16 41 H 0.19 -0.39 8.06 -2.91 -0.02 -0.42 16 42 H 0.19 -0.61 8.06 -2.91 -0.02 -0.63 16 43 H 0.20 0.97 8.06 -2.91 -0.02 0.94 16 Total: -1.00 -80.30 355.80 2.09 -78.21 By element: Atomic # 1 Polarization: 22.93 SS G_CDS: 0.49 Total: 23.42 kcal Atomic # 6 Polarization: 13.01 SS G_CDS: 6.71 Total: 19.71 kcal Atomic # 7 Polarization: -142.64 SS G_CDS: -6.95 Total: -149.60 kcal Atomic # 8 Polarization: -20.07 SS G_CDS: -0.06 Total: -20.13 kcal Atomic # 14 Polarization: 46.47 SS G_CDS: 1.90 Total: 48.38 kcal Total: -80.30 2.09 -78.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986294328.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.315 kcal (2) G-P(sol) polarization free energy of solvation -80.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.212 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds