Wall clock time and date at job start Tue Mar 31 2020 14:42:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.99395 * 2 1 4 4 C 1.54323 * 109.88159 * 121.09139 * 2 1 3 5 5 H 1.09001 * 110.86869 * 260.04885 * 4 2 1 6 6 N 1.46507 * 110.71968 * 23.24572 * 4 2 1 7 7 C 1.36938 * 119.99863 * 202.69059 * 6 4 2 8 8 H 1.08000 * 119.99913 * 359.97438 * 7 6 4 9 9 C 1.38803 * 119.99901 * 179.72593 * 7 6 4 10 10 N 1.31623 * 120.00314 * 0.27765 * 9 7 6 11 11 Si 1.86805 * 120.00020 * 180.27403 * 9 7 6 12 12 H 1.48494 * 109.46868 * 90.00151 * 11 9 7 13 13 H 1.48506 * 109.47159 * 210.00352 * 11 9 7 14 14 H 1.48500 * 109.47330 * 330.00256 * 11 9 7 15 15 C 1.55156 * 102.94008 * 141.61023 * 4 2 1 16 16 C 1.54900 * 101.58189 * 324.49517 * 15 4 2 17 17 N 1.47012 * 109.88212 * 238.89911 * 2 1 3 18 18 C 1.34778 * 125.64961 * 61.68627 * 17 2 1 19 19 O 1.21547 * 120.00347 * 359.97310 * 18 17 2 20 20 C 1.47904 * 120.00467 * 179.97438 * 18 17 2 21 21 N 1.32137 * 120.02636 * 359.73127 * 20 18 17 22 22 C 1.31988 * 122.76280 * 179.69997 * 21 20 18 23 23 C 1.37773 * 121.72861 * 0.58184 * 22 21 20 24 24 C 1.40383 * 118.72830 * 359.71949 * 23 22 21 25 25 C 1.40642 * 122.28072 * 180.02562 * 24 23 22 26 26 C 1.36641 * 117.95385 * 179.97438 * 25 24 23 27 27 C 1.39397 * 119.92655 * 359.97438 * 26 25 24 28 28 N 1.31204 * 121.85357 * 0.02562 * 27 26 25 29 29 C 1.33260 * 121.22201 * 0.02562 * 28 27 26 30 30 H 1.09002 * 109.47215 * 291.88194 * 1 2 3 31 31 H 1.08994 * 109.47244 * 51.88554 * 1 2 3 32 32 H 1.09001 * 109.47190 * 171.88740 * 1 2 3 33 33 H 0.96994 * 120.00004 * 22.69183 * 6 4 2 34 34 H 0.97001 * 120.00496 * 179.97438 * 10 9 7 35 35 H 1.08993 * 111.00199 * 82.57534 * 15 4 2 36 36 H 1.09006 * 110.99986 * 206.42066 * 15 4 2 37 37 H 1.09009 * 110.36663 * 155.84591 * 16 15 4 38 38 H 1.09000 * 110.37179 * 278.06349 * 16 15 4 39 39 H 1.07998 * 119.12966 * 180.28277 * 22 21 20 40 40 H 1.08000 * 120.63118 * 179.74399 * 23 22 21 41 41 H 1.07996 * 121.02438 * 359.97438 * 25 24 23 42 42 H 1.08004 * 120.03880 * 180.02562 * 26 25 24 43 43 H 1.08002 * 119.07222 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0548 -0.7494 1.2428 5 1 2.3524 -0.0480 2.0223 6 7 1.0471 -1.6854 1.7476 7 6 1.0889 -2.0982 3.0526 8 1 1.8649 -1.7342 3.7095 9 6 0.1308 -2.9806 3.5323 10 7 -0.8147 -3.4247 2.7316 11 14 0.1832 -3.5378 5.3146 12 1 -0.6167 -2.6051 6.1485 13 1 -0.3820 -4.9068 5.4220 14 1 1.5900 -3.5444 5.7900 15 6 3.2876 -1.5142 0.6925 16 6 2.8145 -1.8795 -0.7366 17 7 2.0300 -0.7141 -1.1838 18 6 1.8087 -0.3614 -2.4656 19 8 1.1439 0.6243 -2.7186 20 6 2.3746 -1.1736 -3.5645 21 7 3.1018 -2.2422 -3.2902 22 6 3.6275 -3.0083 -4.2276 23 6 3.4595 -2.7329 -5.5670 24 6 2.7029 -1.6092 -5.9351 25 6 2.4835 -1.2590 -7.2795 26 6 1.7326 -0.1469 -7.5373 27 6 1.2110 0.6000 -6.4822 28 7 1.4189 0.2684 -5.2299 29 6 2.1430 -0.8036 -4.9102 30 1 -0.3634 0.3830 0.9536 31 1 -0.3633 0.6343 -0.8085 32 1 -0.3633 -1.0174 -0.1450 33 1 0.3504 -2.0126 1.1574 34 1 -1.4841 -4.0416 3.0667 35 1 4.1653 -0.8688 0.6605 36 1 3.4852 -2.4109 1.2798 37 1 3.6716 -2.0339 -1.3921 38 1 2.1901 -2.7726 -0.7128 39 1 4.2086 -3.8709 -3.9369 40 1 3.9012 -3.3696 -6.3193 41 1 2.8959 -1.8507 -8.0832 42 1 1.5428 0.1527 -8.5574 43 1 0.6191 1.4763 -6.7018 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986364911.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:11 Heat of formation + Delta-G solvation = 75.297209 kcal Electronic energy + Delta-G solvation = -27539.397503 eV Core-core repulsion = 23779.006571 eV Total energy + Delta-G solvation = -3760.390931 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.50621 -39.63771 -38.17491 -37.21338 -33.99681 -33.80925 -31.93165 -31.43509 -30.71810 -30.44457 -28.66135 -25.67679 -25.00870 -24.33775 -23.89360 -23.32655 -21.94710 -20.04027 -19.22739 -18.41395 -17.71696 -17.35137 -17.14160 -16.24656 -15.95179 -15.32976 -15.00130 -14.69993 -14.61585 -14.38469 -13.87511 -13.66169 -13.52044 -13.40279 -13.08994 -12.88774 -12.74295 -12.46688 -12.29295 -12.12132 -11.60537 -11.15636 -11.03428 -10.93412 -10.85449 -10.72091 -10.50223 -10.20843 -10.05500 -9.90207 -9.74952 -9.61759 -9.52241 -9.11097 -8.86709 -8.69557 -8.07612 -6.94416 -5.75232 -3.04229 -0.27048 0.43013 1.43416 2.57427 3.16031 3.24900 3.44847 3.50143 3.51634 3.93374 3.97828 4.05832 4.18128 4.32944 4.45761 4.51110 4.60194 4.85999 5.00212 5.09204 5.23587 5.31934 5.32599 5.43976 5.58996 5.61587 5.71955 5.78030 5.83996 5.93108 5.98807 6.07330 6.21457 6.29295 6.47895 6.50425 6.58708 6.70386 6.74036 6.93092 6.99188 7.10664 7.45247 7.70537 7.72259 7.97391 8.43014 8.54849 9.54624 10.11425 10.46817 11.47092 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.022768 B = 0.003030 C = 0.002888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.488290 B = 9238.863045 C = 9693.547344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.127 3.873 3 H 0.072 0.928 4 C 0.172 3.828 5 H 0.068 0.932 6 N -0.714 5.714 7 C -0.240 4.240 8 H 0.071 0.929 9 C -0.012 4.012 10 N -0.931 5.931 11 Si 0.907 3.093 12 H -0.290 1.290 13 H -0.293 1.293 14 H -0.282 1.282 15 C -0.163 4.163 16 C 0.109 3.891 17 N -0.588 5.588 18 C 0.572 3.428 19 O -0.503 6.503 20 C 0.154 3.846 21 N -0.435 5.435 22 C 0.075 3.925 23 C -0.129 4.129 24 C -0.084 4.084 25 C -0.065 4.065 26 C -0.156 4.156 27 C 0.128 3.872 28 N -0.417 5.417 29 C 0.105 3.895 30 H 0.070 0.930 31 H 0.053 0.947 32 H 0.061 0.939 33 H 0.388 0.612 34 H 0.255 0.745 35 H 0.058 0.942 36 H 0.085 0.915 37 H 0.091 0.909 38 H 0.068 0.932 39 H 0.167 0.833 40 H 0.145 0.855 41 H 0.144 0.856 42 H 0.142 0.858 43 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.118 3.367 -22.274 24.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.024 3.976 3 H 0.090 0.910 4 C 0.060 3.940 5 H 0.086 0.914 6 N -0.356 5.356 7 C -0.371 4.371 8 H 0.089 0.911 9 C -0.208 4.208 10 N -0.579 5.579 11 Si 0.738 3.262 12 H -0.218 1.218 13 H -0.219 1.219 14 H -0.208 1.208 15 C -0.205 4.205 16 C -0.013 4.013 17 N -0.321 5.321 18 C 0.357 3.643 19 O -0.377 6.377 20 C 0.001 3.999 21 N -0.148 5.148 22 C -0.071 4.071 23 C -0.150 4.150 24 C -0.091 4.091 25 C -0.092 4.092 26 C -0.177 4.177 27 C -0.046 4.046 28 N -0.125 5.125 29 C -0.020 4.020 30 H 0.089 0.911 31 H 0.072 0.928 32 H 0.080 0.920 33 H 0.224 0.776 34 H 0.065 0.935 35 H 0.076 0.924 36 H 0.104 0.896 37 H 0.109 0.891 38 H 0.086 0.914 39 H 0.184 0.816 40 H 0.162 0.838 41 H 0.162 0.838 42 H 0.160 0.840 43 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 9.632 4.018 -20.649 23.136 hybrid contribution 0.046 -1.070 -0.916 1.410 sum 9.678 2.948 -21.565 23.820 Atomic orbital electron populations 1.21905 0.94179 1.02467 1.01990 1.22022 0.95433 0.95596 0.84556 0.91028 1.21217 0.89289 0.91625 0.91898 0.91440 1.42538 1.31158 1.51634 1.10292 1.19237 1.09525 1.21163 0.87187 0.91066 1.24737 0.97822 1.00318 0.97892 1.69669 1.17138 1.36522 1.34552 0.86202 0.77359 0.77745 0.84921 1.21776 1.21900 1.20777 1.23567 0.98921 1.02151 0.95845 1.22564 0.95649 0.87822 0.95269 1.48503 1.50928 1.28520 1.04179 1.17170 0.81657 0.84553 0.80933 1.90833 1.38527 1.25835 1.82518 1.21623 0.94476 0.92512 0.91335 1.67772 1.06363 1.03342 1.37279 1.22725 0.97448 0.98361 0.88526 1.22357 0.98094 0.96336 0.98211 1.18970 0.98859 0.96587 0.94656 1.21401 0.96467 0.96493 0.94797 1.22118 0.98201 0.95992 1.01435 1.23332 0.95385 0.98471 0.87429 1.68323 1.10815 1.13086 1.20257 1.19472 0.96329 0.92867 0.93331 0.91119 0.92770 0.92019 0.77553 0.93514 0.92368 0.89600 0.89091 0.91408 0.81616 0.83751 0.83818 0.84001 0.81824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.97 8.13 37.16 0.30 -2.67 16 2 C 0.13 2.41 3.43 -66.96 -0.23 2.18 16 3 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 4 C 0.17 3.42 3.47 -66.09 -0.23 3.19 16 5 H 0.07 1.32 8.10 -51.93 -0.42 0.90 16 6 N -0.71 -17.49 4.59 -51.65 -0.24 -17.73 16 7 C -0.24 -6.48 9.97 -15.06 -0.15 -6.63 16 8 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 9 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 10 N -0.93 -27.90 13.06 55.49 0.72 -27.18 16 11 Si 0.91 22.19 29.55 -169.99 -5.02 17.16 16 12 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 13 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 14 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 15 C -0.16 -2.86 6.77 -24.59 -0.17 -3.03 16 16 C 0.11 1.88 5.93 -2.53 -0.02 1.87 16 17 N -0.59 -10.82 3.06 -164.10 -0.50 -11.32 16 18 C 0.57 10.81 7.63 -12.30 -0.09 10.72 16 19 O -0.50 -10.57 14.39 5.32 0.08 -10.49 16 20 C 0.15 2.51 6.78 -82.55 -0.56 1.95 16 21 N -0.43 -6.17 6.55 -9.55 -0.06 -6.23 16 22 C 0.08 0.78 11.12 -17.65 -0.20 0.58 16 23 C -0.13 -1.13 9.93 -38.94 -0.39 -1.52 16 24 C -0.08 -0.91 5.75 -106.79 -0.61 -1.52 16 25 C -0.07 -0.50 9.94 -39.25 -0.39 -0.89 16 26 C -0.16 -1.14 10.03 -39.73 -0.40 -1.54 16 27 C 0.13 1.31 11.14 -17.39 -0.19 1.12 16 28 N -0.42 -6.29 8.49 -10.75 -0.09 -6.38 16 29 C 0.10 1.55 6.61 -84.63 -0.56 0.99 16 30 H 0.07 1.45 8.12 -51.93 -0.42 1.03 16 31 H 0.05 1.08 7.14 -51.93 -0.37 0.71 16 32 H 0.06 1.37 6.64 -51.93 -0.34 1.02 16 33 H 0.39 10.29 5.75 -40.82 -0.23 10.05 16 34 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 35 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 36 H 0.09 1.61 8.14 -51.93 -0.42 1.19 16 37 H 0.09 1.42 5.89 -51.92 -0.31 1.11 16 38 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 39 H 0.17 1.17 8.06 -52.49 -0.42 0.75 16 40 H 0.14 0.71 8.06 -52.49 -0.42 0.29 16 41 H 0.14 0.60 8.06 -52.49 -0.42 0.18 16 42 H 0.14 0.52 8.06 -52.48 -0.42 0.10 16 43 H 0.16 1.20 8.06 -52.49 -0.42 0.78 16 LS Contribution 353.82 15.07 5.33 5.33 Total: -1.00 -34.27 353.82 -9.21 -43.48 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: -5.45 Total: 8.98 kcal Atomic # 6 Polarization: 8.34 SS G_CDS: -3.98 Total: 4.37 kcal Atomic # 7 Polarization: -68.66 SS G_CDS: -0.17 Total: -68.83 kcal Atomic # 8 Polarization: -10.57 SS G_CDS: 0.08 Total: -10.49 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -34.27 -9.21 -43.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986364911.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.777 kcal (2) G-P(sol) polarization free energy of solvation -34.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.480 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds