Wall clock time and date at job start Tue Mar 31 2020 14:42:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.99395 * 2 1 4 4 C 1.54323 * 109.88159 * 121.09139 * 2 1 3 5 5 H 1.09001 * 110.86869 * 260.04885 * 4 2 1 6 6 N 1.46507 * 110.71968 * 23.24572 * 4 2 1 7 7 C 1.36938 * 119.99863 * 202.69059 * 6 4 2 8 8 H 1.08000 * 119.99913 * 359.97438 * 7 6 4 9 9 C 1.38803 * 119.99901 * 179.72593 * 7 6 4 10 10 N 1.31623 * 120.00314 * 0.27765 * 9 7 6 11 11 Si 1.86805 * 120.00020 * 180.27403 * 9 7 6 12 12 H 1.48494 * 109.46868 * 90.00151 * 11 9 7 13 13 H 1.48506 * 109.47159 * 210.00352 * 11 9 7 14 14 H 1.48500 * 109.47330 * 330.00256 * 11 9 7 15 15 C 1.55156 * 102.94008 * 141.61023 * 4 2 1 16 16 C 1.54900 * 101.58189 * 324.49517 * 15 4 2 17 17 N 1.47012 * 109.88212 * 238.89911 * 2 1 3 18 18 C 1.34778 * 125.64961 * 61.68627 * 17 2 1 19 19 O 1.21547 * 120.00347 * 359.97310 * 18 17 2 20 20 C 1.47904 * 120.00467 * 179.97438 * 18 17 2 21 21 N 1.32137 * 120.02636 * 359.73127 * 20 18 17 22 22 C 1.31988 * 122.76280 * 179.69997 * 21 20 18 23 23 C 1.37773 * 121.72861 * 0.58184 * 22 21 20 24 24 C 1.40383 * 118.72830 * 359.71949 * 23 22 21 25 25 C 1.40642 * 122.28072 * 180.02562 * 24 23 22 26 26 C 1.36641 * 117.95385 * 179.97438 * 25 24 23 27 27 C 1.39397 * 119.92655 * 359.97438 * 26 25 24 28 28 N 1.31204 * 121.85357 * 0.02562 * 27 26 25 29 29 C 1.33260 * 121.22201 * 0.02562 * 28 27 26 30 30 H 1.09002 * 109.47215 * 291.88194 * 1 2 3 31 31 H 1.08994 * 109.47244 * 51.88554 * 1 2 3 32 32 H 1.09001 * 109.47190 * 171.88740 * 1 2 3 33 33 H 0.96994 * 120.00004 * 22.69183 * 6 4 2 34 34 H 0.97001 * 120.00496 * 179.97438 * 10 9 7 35 35 H 1.08993 * 111.00199 * 82.57534 * 15 4 2 36 36 H 1.09006 * 110.99986 * 206.42066 * 15 4 2 37 37 H 1.09009 * 110.36663 * 155.84591 * 16 15 4 38 38 H 1.09000 * 110.37179 * 278.06349 * 16 15 4 39 39 H 1.07998 * 119.12966 * 180.28277 * 22 21 20 40 40 H 1.08000 * 120.63118 * 179.74399 * 23 22 21 41 41 H 1.07996 * 121.02438 * 359.97438 * 25 24 23 42 42 H 1.08004 * 120.03880 * 180.02562 * 26 25 24 43 43 H 1.08002 * 119.07222 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0548 -0.7494 1.2428 5 1 2.3524 -0.0480 2.0223 6 7 1.0471 -1.6854 1.7476 7 6 1.0889 -2.0982 3.0526 8 1 1.8649 -1.7342 3.7095 9 6 0.1308 -2.9806 3.5323 10 7 -0.8147 -3.4247 2.7316 11 14 0.1832 -3.5378 5.3146 12 1 -0.6167 -2.6051 6.1485 13 1 -0.3820 -4.9068 5.4220 14 1 1.5900 -3.5444 5.7900 15 6 3.2876 -1.5142 0.6925 16 6 2.8145 -1.8795 -0.7366 17 7 2.0300 -0.7141 -1.1838 18 6 1.8087 -0.3614 -2.4656 19 8 1.1439 0.6243 -2.7186 20 6 2.3746 -1.1736 -3.5645 21 7 3.1018 -2.2422 -3.2902 22 6 3.6275 -3.0083 -4.2276 23 6 3.4595 -2.7329 -5.5670 24 6 2.7029 -1.6092 -5.9351 25 6 2.4835 -1.2590 -7.2795 26 6 1.7326 -0.1469 -7.5373 27 6 1.2110 0.6000 -6.4822 28 7 1.4189 0.2684 -5.2299 29 6 2.1430 -0.8036 -4.9102 30 1 -0.3634 0.3830 0.9536 31 1 -0.3633 0.6343 -0.8085 32 1 -0.3633 -1.0174 -0.1450 33 1 0.3504 -2.0126 1.1574 34 1 -1.4841 -4.0416 3.0667 35 1 4.1653 -0.8688 0.6605 36 1 3.4852 -2.4109 1.2798 37 1 3.6716 -2.0339 -1.3921 38 1 2.1901 -2.7726 -0.7128 39 1 4.2086 -3.8709 -3.9369 40 1 3.9012 -3.3696 -6.3193 41 1 2.8959 -1.8507 -8.0832 42 1 1.5428 0.1527 -8.5574 43 1 0.6191 1.4763 -6.7018 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986364911.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:10 Heat of formation + Delta-G solvation = 52.401752 kcal Electronic energy + Delta-G solvation = -27540.390324 eV Core-core repulsion = 23779.006571 eV Total energy + Delta-G solvation = -3761.383753 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.37881 -41.00020 -39.07113 -38.68759 -35.71789 -34.76399 -33.38179 -32.46976 -32.23817 -31.56217 -30.33580 -26.83512 -26.46458 -25.54974 -25.07540 -24.69303 -23.19866 -21.36615 -20.43700 -19.55917 -19.30279 -18.55929 -18.16954 -17.50410 -17.25582 -16.54647 -16.30150 -15.82675 -15.75909 -15.59677 -15.31387 -15.17567 -14.70566 -14.48984 -14.24618 -14.10326 -14.00180 -13.75334 -13.71805 -13.20754 -13.14765 -12.93482 -12.86348 -12.54892 -12.33380 -12.22045 -12.06320 -11.81454 -11.66838 -11.47666 -11.19623 -10.95268 -10.68387 -10.36901 -10.11471 -9.66635 -9.40282 -8.97755 -7.89896 -5.18694 -1.09809 -0.32642 0.65585 1.50170 1.51680 1.59855 1.65232 1.88281 2.17759 2.59130 2.99741 3.06425 3.20667 3.39116 3.42210 3.63635 3.71420 3.78687 3.88417 3.91991 3.95716 4.22980 4.25498 4.28396 4.36903 4.45819 4.48857 4.57666 4.62246 4.65514 4.79934 4.87536 4.95723 5.06233 5.11114 5.11520 5.23164 5.31238 5.33713 5.42451 5.52663 5.58478 5.63960 6.30705 6.51645 6.61060 6.92569 7.18055 7.37624 8.11101 8.36081 9.33691 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.022768 B = 0.003030 C = 0.002888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.488290 B = 9238.863045 C = 9693.547344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.131 3.869 3 H 0.084 0.916 4 C 0.165 3.835 5 H 0.077 0.923 6 N -0.725 5.725 7 C -0.233 4.233 8 H 0.082 0.918 9 C -0.076 4.076 10 N -0.972 5.972 11 Si 0.973 3.027 12 H -0.291 1.291 13 H -0.300 1.300 14 H -0.266 1.266 15 C -0.150 4.150 16 C 0.121 3.879 17 N -0.593 5.593 18 C 0.566 3.434 19 O -0.538 6.538 20 C 0.100 3.900 21 N -0.447 5.447 22 C 0.051 3.949 23 C -0.089 4.089 24 C -0.104 4.104 25 C -0.050 4.050 26 C -0.153 4.153 27 C 0.127 3.873 28 N -0.486 5.486 29 C 0.084 3.916 30 H 0.063 0.937 31 H 0.049 0.951 32 H 0.034 0.966 33 H 0.375 0.625 34 H 0.248 0.752 35 H 0.088 0.912 36 H 0.075 0.925 37 H 0.112 0.888 38 H 0.041 0.959 39 H 0.199 0.801 40 H 0.197 0.803 41 H 0.193 0.807 42 H 0.187 0.813 43 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.819 2.562 -25.225 28.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.027 3.973 3 H 0.101 0.899 4 C 0.055 3.945 5 H 0.095 0.905 6 N -0.366 5.366 7 C -0.365 4.365 8 H 0.100 0.900 9 C -0.268 4.268 10 N -0.623 5.623 11 Si 0.802 3.198 12 H -0.218 1.218 13 H -0.227 1.227 14 H -0.191 1.191 15 C -0.191 4.191 16 C -0.001 4.001 17 N -0.326 5.326 18 C 0.354 3.646 19 O -0.415 6.415 20 C -0.051 4.051 21 N -0.160 5.160 22 C -0.096 4.096 23 C -0.109 4.109 24 C -0.112 4.112 25 C -0.075 4.075 26 C -0.173 4.173 27 C -0.046 4.046 28 N -0.195 5.195 29 C -0.040 4.040 30 H 0.082 0.918 31 H 0.069 0.931 32 H 0.053 0.947 33 H 0.209 0.791 34 H 0.057 0.943 35 H 0.106 0.894 36 H 0.094 0.906 37 H 0.130 0.870 38 H 0.059 0.941 39 H 0.216 0.784 40 H 0.214 0.786 41 H 0.210 0.790 42 H 0.204 0.796 43 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 12.384 3.252 -23.596 26.846 hybrid contribution -0.745 -0.778 -0.278 1.112 sum 11.639 2.474 -23.874 26.675 Atomic orbital electron populations 1.21714 0.95564 1.00409 1.01256 1.21903 0.94241 0.96250 0.84913 0.89851 1.21420 0.89286 0.91328 0.92437 0.90536 1.42674 1.31969 1.52375 1.09568 1.19652 1.08855 1.19829 0.88146 0.89984 1.25534 0.98067 1.01404 1.01820 1.69847 1.18252 1.37801 1.36362 0.85146 0.77860 0.76506 0.80260 1.21834 1.22738 1.19082 1.23436 0.98599 1.01733 0.95300 1.22464 0.95586 0.86464 0.95543 1.48545 1.51269 1.28681 1.04115 1.17761 0.80936 0.84473 0.81454 1.90775 1.40062 1.27465 1.83151 1.21124 0.98364 0.94414 0.91178 1.67543 1.06069 1.02997 1.39382 1.23346 0.98182 0.98997 0.89087 1.22949 0.94556 0.94775 0.98586 1.19369 0.99376 0.96978 0.95450 1.21988 0.94958 0.96367 0.94203 1.22531 0.97053 0.95265 1.02456 1.23910 0.94517 0.99052 0.87127 1.68239 1.13483 1.14861 1.22922 1.19602 0.97063 0.93747 0.93610 0.91843 0.93149 0.94742 0.79123 0.94288 0.89351 0.90607 0.87034 0.94077 0.78384 0.78551 0.79003 0.79584 0.80102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.67 8.13 71.98 0.59 -5.08 16 2 C 0.13 5.15 3.43 45.34 0.16 5.31 16 3 H 0.08 3.09 8.14 -2.39 -0.02 3.07 16 4 C 0.17 6.68 3.47 46.18 0.16 6.84 16 5 H 0.08 2.97 8.10 -2.39 -0.02 2.95 16 6 N -0.73 -36.65 4.59 -317.32 -1.46 -38.11 16 7 C -0.23 -12.74 9.97 84.03 0.84 -11.90 16 8 H 0.08 4.23 7.83 -2.91 -0.02 4.20 16 9 C -0.08 -4.38 5.50 84.86 0.47 -3.92 16 10 N -0.97 -60.40 13.06 21.65 0.28 -60.12 16 11 Si 0.97 46.35 29.55 68.60 2.03 48.38 16 12 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 13 H -0.30 -14.57 7.11 99.48 0.71 -13.87 16 14 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 15 C -0.15 -5.20 6.77 31.98 0.22 -4.99 16 16 C 0.12 4.30 5.93 86.85 0.52 4.81 16 17 N -0.59 -22.88 3.06 -791.38 -2.42 -25.31 16 18 C 0.57 22.82 7.63 86.80 0.66 23.48 16 19 O -0.54 -24.32 14.39 -3.86 -0.06 -24.38 16 20 C 0.10 3.39 6.78 42.46 0.29 3.68 16 21 N -0.45 -12.68 6.55 -184.13 -1.21 -13.89 16 22 C 0.05 0.93 11.12 84.56 0.94 1.87 16 23 C -0.09 -1.18 9.93 22.68 0.23 -0.96 16 24 C -0.10 -1.98 5.75 -21.27 -0.12 -2.11 16 25 C -0.05 -0.52 9.94 22.48 0.22 -0.30 16 26 C -0.15 -1.64 10.03 22.18 0.22 -1.42 16 27 C 0.13 2.49 11.14 85.07 0.95 3.44 16 28 N -0.49 -15.14 8.49 -187.92 -1.60 -16.74 16 29 C 0.08 2.51 6.61 40.62 0.27 2.78 16 30 H 0.06 2.76 8.12 -2.39 -0.02 2.74 16 31 H 0.05 2.17 7.14 -2.39 -0.02 2.15 16 32 H 0.03 1.65 6.64 -2.39 -0.02 1.63 16 33 H 0.37 20.95 5.75 -92.71 -0.53 20.42 16 34 H 0.25 15.07 8.31 -92.71 -0.77 14.30 16 35 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 36 H 0.08 2.81 8.14 -2.38 -0.02 2.79 16 37 H 0.11 3.48 5.89 -2.38 -0.01 3.47 16 38 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.20 2.12 8.06 -2.91 -0.02 2.10 16 40 H 0.20 0.52 8.06 -2.91 -0.02 0.50 16 41 H 0.19 0.16 8.06 -2.91 -0.02 0.13 16 42 H 0.19 0.31 8.06 -2.91 -0.02 0.29 16 43 H 0.18 2.52 8.06 -2.91 -0.02 2.50 16 Total: -1.00 -81.93 353.82 2.68 -79.25 By element: Atomic # 1 Polarization: 28.86 SS G_CDS: 0.51 Total: 29.37 kcal Atomic # 6 Polarization: 14.95 SS G_CDS: 6.59 Total: 21.54 kcal Atomic # 7 Polarization: -147.76 SS G_CDS: -6.40 Total: -154.16 kcal Atomic # 8 Polarization: -24.32 SS G_CDS: -0.06 Total: -24.38 kcal Atomic # 14 Polarization: 46.35 SS G_CDS: 2.03 Total: 48.38 kcal Total: -81.93 2.68 -79.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986364911.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.650 kcal (2) G-P(sol) polarization free energy of solvation -81.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.248 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds