Wall clock time and date at job start Tue Mar 31 2020 14:42:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09005 * 109.87255 * 2 1 4 4 C 1.54322 * 110.01294 * 121.10261 * 2 1 3 5 5 H 1.08996 * 110.72143 * 23.31728 * 4 2 1 6 6 N 1.46501 * 110.71641 * 260.22327 * 4 2 1 7 7 C 1.36944 * 119.99646 * 155.00331 * 6 4 2 8 8 H 1.07999 * 119.99834 * 359.97438 * 7 6 4 9 9 C 1.38809 * 119.99441 * 179.97438 * 7 6 4 10 10 N 1.31620 * 120.00376 * 359.97438 * 9 7 6 11 11 Si 1.86807 * 119.99603 * 179.97438 * 9 7 6 12 12 H 1.48497 * 109.47022 * 359.97438 * 11 9 7 13 13 H 1.48498 * 109.46754 * 120.00102 * 11 9 7 14 14 H 1.48504 * 109.47008 * 239.99720 * 11 9 7 15 15 C 1.55151 * 102.94280 * 141.68098 * 4 2 1 16 16 C 1.55130 * 101.48763 * 324.33249 * 15 4 2 17 17 N 1.47020 * 109.87869 * 238.98931 * 2 1 3 18 18 C 1.34781 * 125.65206 * 61.44594 * 17 2 1 19 19 O 1.21539 * 119.99707 * 0.02562 * 18 17 2 20 20 C 1.47896 * 119.99867 * 179.97438 * 18 17 2 21 21 N 1.32136 * 120.03800 * 0.02562 * 20 18 17 22 22 C 1.31977 * 122.77215 * 179.97438 * 21 20 18 23 23 C 1.37777 * 121.72685 * 0.26017 * 22 21 20 24 24 C 1.40389 * 118.72751 * 359.49162 * 23 22 21 25 25 C 1.40637 * 122.27811 * 180.25844 * 24 23 22 26 26 C 1.36647 * 117.95183 * 180.23151 * 25 24 23 27 27 C 1.39398 * 119.92365 * 0.02562 * 26 25 24 28 28 N 1.31201 * 121.85287 * 359.97438 * 27 26 25 29 29 C 1.33260 * 121.22618 * 0.02562 * 28 27 26 30 30 H 1.09001 * 109.47123 * 179.56431 * 1 2 3 31 31 H 1.08998 * 109.46950 * 299.55638 * 1 2 3 32 32 H 1.08991 * 109.47600 * 59.55868 * 1 2 3 33 33 H 0.97000 * 120.00289 * 334.99341 * 6 4 2 34 34 H 0.96998 * 119.99669 * 180.02562 * 10 9 7 35 35 H 1.09003 * 111.00262 * 82.57050 * 15 4 2 36 36 H 1.08996 * 111.00865 * 206.38405 * 15 4 2 37 37 H 1.09004 * 110.49427 * 278.45339 * 16 15 4 38 38 H 1.08996 * 110.34659 * 156.06012 * 16 15 4 39 39 H 1.08002 * 119.13320 * 179.97438 * 22 21 20 40 40 H 1.08005 * 120.63338 * 179.74335 * 23 22 21 41 41 H 1.08000 * 121.02845 * 0.25691 * 25 24 23 42 42 H 1.08002 * 120.03713 * 179.97438 * 26 25 24 43 43 H 1.08000 * 119.07138 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0582 -0.7490 1.2416 5 1 1.3105 -1.4473 1.6177 6 7 2.4542 0.1968 2.2879 7 6 2.4586 -0.1959 3.5998 8 1 2.1698 -1.2027 3.8631 9 6 2.8343 0.7002 4.5911 10 7 3.1868 1.9270 4.2702 11 14 2.8397 0.1648 6.3808 12 1 2.4052 -1.2521 6.4749 13 1 4.2111 0.3004 6.9339 14 1 1.9063 1.0208 7.1564 15 6 3.2918 -1.5108 0.6892 16 6 2.8130 -1.8793 -0.7396 17 7 2.0300 -0.7123 -1.1850 18 6 1.8048 -0.3601 -2.4663 19 8 1.1370 0.6238 -2.7177 20 6 2.3712 -1.1704 -3.5664 21 7 3.0977 -2.2399 -3.2938 22 6 3.6282 -3.0013 -4.2322 23 6 3.4608 -2.7234 -5.5713 24 6 2.6955 -1.6050 -5.9378 25 6 2.4722 -1.2554 -7.2816 26 6 1.7174 -0.1455 -7.5378 27 6 1.1967 0.6003 -6.4815 28 7 1.4084 0.2693 -5.2297 29 6 2.1356 -0.8011 -4.9116 30 1 -0.3633 -1.0276 -0.0078 31 1 -0.3633 0.5069 0.8939 32 1 -0.3634 0.5206 -0.8859 33 1 2.7134 1.1011 2.0515 34 1 3.4497 2.5530 4.9630 35 1 4.1682 -0.8634 0.6563 36 1 3.4926 -2.4070 1.2760 37 1 2.1852 -2.7700 -0.7138 38 1 3.6681 -2.0358 -1.3972 39 1 4.2126 -3.8622 -3.9428 40 1 3.9063 -3.3563 -6.3245 41 1 2.8843 -1.8462 -8.0863 42 1 1.5251 0.1539 -8.5575 43 1 0.6017 1.4748 -6.6997 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986364913.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:17 Heat of formation + Delta-G solvation = 70.330918 kcal Electronic energy + Delta-G solvation = -27188.056970 eV Core-core repulsion = 23427.450685 eV Total energy + Delta-G solvation = -3760.606286 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.57666 -39.66706 -38.23100 -37.19567 -34.09564 -33.94309 -31.99998 -31.49746 -30.83717 -30.48992 -28.90963 -25.73389 -25.06447 -24.40977 -23.92665 -22.86902 -22.03269 -20.22732 -19.54977 -18.66878 -17.80827 -17.26438 -17.12186 -16.36230 -15.93344 -15.38678 -15.07072 -14.74606 -14.68616 -14.47411 -13.94505 -13.61536 -13.48109 -13.46328 -13.18375 -12.98474 -12.82161 -12.64202 -12.40362 -11.96754 -11.73153 -11.48800 -11.12015 -11.06499 -10.94390 -10.80748 -10.48220 -10.22129 -10.10163 -9.95919 -9.83199 -9.67961 -9.62869 -9.20613 -8.85610 -8.76713 -8.17812 -6.96123 -5.76342 -3.06117 -0.34278 0.36297 1.36894 2.49909 3.06533 3.17308 3.44404 3.49974 3.52319 3.85807 3.90420 3.97509 4.11010 4.26251 4.38811 4.45476 4.59949 4.79180 4.92928 5.03011 5.17124 5.25777 5.26902 5.39571 5.51998 5.53126 5.71006 5.73274 5.73809 5.85604 5.92611 5.99965 6.18287 6.22023 6.22293 6.34209 6.49598 6.59428 6.72307 6.74142 6.87891 7.03923 7.36837 7.63964 7.71501 7.88154 8.40904 8.46877 9.52622 10.08211 10.43120 11.46048 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.026986 B = 0.002737 C = 0.002574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.325562 B =10226.858707 C =10873.703338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.126 3.874 3 H 0.078 0.922 4 C 0.176 3.824 5 H 0.067 0.933 6 N -0.715 5.715 7 C -0.240 4.240 8 H 0.073 0.927 9 C -0.012 4.012 10 N -0.930 5.930 11 Si 0.907 3.093 12 H -0.280 1.280 13 H -0.292 1.292 14 H -0.292 1.292 15 C -0.159 4.159 16 C 0.102 3.898 17 N -0.590 5.590 18 C 0.572 3.428 19 O -0.500 6.500 20 C 0.153 3.847 21 N -0.437 5.437 22 C 0.074 3.926 23 C -0.128 4.128 24 C -0.084 4.084 25 C -0.065 4.065 26 C -0.156 4.156 27 C 0.129 3.871 28 N -0.418 5.418 29 C 0.105 3.895 30 H 0.049 0.951 31 H 0.070 0.930 32 H 0.062 0.938 33 H 0.386 0.614 34 H 0.255 0.745 35 H 0.072 0.928 36 H 0.074 0.926 37 H 0.061 0.939 38 H 0.095 0.905 39 H 0.167 0.833 40 H 0.145 0.855 41 H 0.144 0.856 42 H 0.143 0.857 43 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.312 -10.560 -26.445 28.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.023 3.977 3 H 0.096 0.904 4 C 0.065 3.935 5 H 0.085 0.915 6 N -0.355 5.355 7 C -0.371 4.371 8 H 0.091 0.909 9 C -0.208 4.208 10 N -0.578 5.578 11 Si 0.738 3.262 12 H -0.205 1.205 13 H -0.219 1.219 14 H -0.219 1.219 15 C -0.200 4.200 16 C -0.021 4.021 17 N -0.323 5.323 18 C 0.357 3.643 19 O -0.373 6.373 20 C 0.000 4.000 21 N -0.150 5.150 22 C -0.072 4.072 23 C -0.149 4.149 24 C -0.091 4.091 25 C -0.092 4.092 26 C -0.177 4.177 27 C -0.045 4.045 28 N -0.126 5.126 29 C -0.020 4.020 30 H 0.068 0.932 31 H 0.089 0.911 32 H 0.081 0.919 33 H 0.220 0.780 34 H 0.065 0.935 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.079 0.921 38 H 0.113 0.887 39 H 0.184 0.816 40 H 0.163 0.837 41 H 0.162 0.838 42 H 0.161 0.839 43 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -0.831 -9.923 -24.816 26.739 hybrid contribution 0.523 -0.400 -0.772 1.015 sum -0.308 -10.323 -25.588 27.594 Atomic orbital electron populations 1.22041 0.94890 1.01555 1.02728 1.21998 0.94441 0.96965 0.84307 0.90390 1.21246 0.93736 0.91540 0.87014 0.91542 1.42365 1.79540 1.11678 1.01915 1.19266 1.38114 0.96753 0.82937 0.90949 1.24762 1.02139 0.95884 0.98045 1.69680 1.51516 1.04531 1.32099 0.86116 0.77160 0.77603 0.85280 1.20513 1.21896 1.21876 1.23646 1.01037 1.01490 0.93876 1.22699 0.95839 0.87294 0.96257 1.48412 1.51057 1.28592 1.04256 1.17189 0.81728 0.84528 0.80890 1.90844 1.38336 1.25622 1.82486 1.21614 0.94530 0.92492 0.91341 1.67744 1.06373 1.03555 1.37280 1.22708 0.97527 0.98448 0.88530 1.22366 0.97919 0.96349 0.98236 1.18972 0.98819 0.96637 0.94670 1.21408 0.96406 0.96533 0.94808 1.22134 0.98117 0.95946 1.01476 1.23349 0.95323 0.98396 0.87389 1.68328 1.10951 1.12924 1.20350 1.19472 0.96338 0.92839 0.93308 0.93185 0.91108 0.91929 0.78015 0.93490 0.90908 0.90771 0.92088 0.88679 0.81615 0.83732 0.83783 0.83942 0.81757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.77 9.11 37.16 0.34 -2.43 16 2 C 0.13 2.41 3.20 -66.95 -0.21 2.20 16 3 H 0.08 1.65 7.72 -51.93 -0.40 1.25 16 4 C 0.18 3.56 3.13 -66.10 -0.21 3.35 16 5 H 0.07 1.34 7.80 -51.93 -0.41 0.93 16 6 N -0.71 -17.88 5.23 -51.66 -0.27 -18.15 16 7 C -0.24 -6.56 9.96 -15.06 -0.15 -6.71 16 8 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 9 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 10 N -0.93 -28.13 13.06 55.49 0.72 -27.40 16 11 Si 0.91 22.29 29.55 -169.99 -5.02 17.27 16 12 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 13 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 14 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 15 C -0.16 -2.81 6.79 -24.47 -0.17 -2.97 16 16 C 0.10 1.57 5.97 -2.41 -0.01 1.56 16 17 N -0.59 -10.36 3.06 -163.96 -0.50 -10.87 16 18 C 0.57 10.38 7.63 -12.30 -0.09 10.29 16 19 O -0.50 -10.30 14.24 5.33 0.08 -10.22 16 20 C 0.15 2.35 6.78 -82.55 -0.56 1.79 16 21 N -0.44 -5.62 6.55 -9.55 -0.06 -5.68 16 22 C 0.07 0.67 11.12 -17.66 -0.20 0.47 16 23 C -0.13 -1.00 9.93 -38.94 -0.39 -1.38 16 24 C -0.08 -0.85 5.75 -106.79 -0.61 -1.46 16 25 C -0.07 -0.46 9.94 -39.25 -0.39 -0.85 16 26 C -0.16 -1.05 10.03 -39.72 -0.40 -1.45 16 27 C 0.13 1.26 11.14 -17.39 -0.19 1.07 16 28 N -0.42 -6.05 8.49 -10.75 -0.09 -6.14 16 29 C 0.11 1.47 6.61 -84.62 -0.56 0.91 16 30 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 32 H 0.06 1.16 6.87 -51.93 -0.36 0.80 16 33 H 0.39 10.40 7.56 -40.82 -0.31 10.09 16 34 H 0.26 7.46 8.31 -40.82 -0.34 7.13 16 35 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 36 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 37 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.10 1.38 5.88 -51.93 -0.31 1.07 16 39 H 0.17 0.94 8.06 -52.49 -0.42 0.52 16 40 H 0.14 0.58 8.06 -52.48 -0.42 0.15 16 41 H 0.14 0.50 8.06 -52.49 -0.42 0.08 16 42 H 0.14 0.45 8.06 -52.49 -0.42 0.03 16 43 H 0.17 1.14 8.06 -52.49 -0.42 0.72 16 LS Contribution 357.09 15.07 5.38 5.38 Total: -1.00 -34.73 357.09 -9.22 -43.95 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: -5.55 Total: 7.92 kcal Atomic # 6 Polarization: 7.85 SS G_CDS: -3.90 Total: 3.95 kcal Atomic # 7 Polarization: -68.04 SS G_CDS: -0.20 Total: -68.24 kcal Atomic # 8 Polarization: -10.30 SS G_CDS: 0.08 Total: -10.22 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -34.73 -9.22 -43.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986364913.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.279 kcal (2) G-P(sol) polarization free energy of solvation -34.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.948 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds