Wall clock time and date at job start Tue Mar 31 2020 14:42:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08993 * 109.87605 * 2 1 4 4 C 1.54326 * 110.00981 * 121.10408 * 2 1 3 5 5 H 1.09001 * 110.71846 * 260.03806 * 4 2 1 6 6 N 1.46492 * 110.72193 * 23.13617 * 4 2 1 7 7 C 1.36940 * 120.00200 * 205.00162 * 6 4 2 8 8 H 1.08003 * 119.99894 * 359.97438 * 7 6 4 9 9 C 1.38808 * 120.00062 * 180.02562 * 7 6 4 10 10 N 1.31619 * 120.00531 * 359.97438 * 9 7 6 11 11 Si 1.86806 * 120.00079 * 180.02562 * 9 7 6 12 12 H 1.48504 * 109.46930 * 59.99270 * 11 9 7 13 13 H 1.48500 * 109.47274 * 179.97438 * 11 9 7 14 14 H 1.48505 * 109.46939 * 299.99779 * 11 9 7 15 15 C 1.55154 * 102.94205 * 141.67927 * 4 2 1 16 16 C 1.55126 * 101.48835 * 324.33103 * 15 4 2 17 17 N 1.47023 * 109.88001 * 238.98587 * 2 1 3 18 18 C 1.34780 * 125.65063 * 61.45124 * 17 2 1 19 19 O 1.21540 * 119.99371 * 0.02562 * 18 17 2 20 20 C 1.47913 * 119.99978 * 180.02562 * 18 17 2 21 21 N 1.32368 * 120.63816 * 5.68290 * 20 18 17 22 22 N 1.28087 * 123.18547 * 180.02562 * 21 20 18 23 23 C 1.31799 * 123.49552 * 359.97438 * 22 21 20 24 24 C 1.40410 * 119.13355 * 359.97438 * 23 22 21 25 25 C 1.40234 * 122.73227 * 180.02562 * 24 23 22 26 26 C 1.36248 * 119.36885 * 180.22642 * 25 24 23 27 27 C 1.39380 * 121.07512 * 359.49557 * 26 25 24 28 28 C 1.36368 * 121.08470 * 0.48665 * 27 26 25 29 29 C 1.39830 * 119.42232 * 359.77551 * 28 27 26 30 30 H 1.08997 * 109.47422 * 179.55978 * 1 2 3 31 31 H 1.08998 * 109.47052 * 299.55750 * 1 2 3 32 32 H 1.08999 * 109.47339 * 59.55894 * 1 2 3 33 33 H 0.97001 * 120.00241 * 25.00440 * 6 4 2 34 34 H 0.96995 * 120.00781 * 180.02562 * 10 9 7 35 35 H 1.09001 * 111.00445 * 82.57272 * 15 4 2 36 36 H 1.09001 * 111.00663 * 206.37890 * 15 4 2 37 37 H 1.09005 * 110.49425 * 278.45345 * 16 15 4 38 38 H 1.09006 * 110.34477 * 156.06096 * 16 15 4 39 39 H 1.07994 * 120.43315 * 180.02562 * 23 22 21 40 40 H 1.07999 * 120.31373 * 359.95020 * 25 24 23 41 41 H 1.08005 * 119.46822 * 179.71898 * 26 25 24 42 42 H 1.08000 * 119.45964 * 180.26331 * 27 26 25 43 43 H 1.07998 * 120.28724 * 179.74976 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0250 0.0000 4 6 2.0580 -0.7491 1.2416 5 1 2.3557 -0.0453 2.0189 6 7 1.0515 -1.6844 1.7497 7 6 1.0685 -2.0599 3.0665 8 1 1.8243 -1.6669 3.7304 9 6 0.1151 -2.9466 3.5477 10 7 -0.8057 -3.4260 2.7386 11 14 0.1379 -3.4583 5.3442 12 1 -0.0227 -2.2575 6.2030 13 1 -0.9767 -4.4047 5.6035 14 1 1.4312 -4.1191 5.6542 15 6 3.2917 -1.5109 0.6892 16 6 2.8129 -1.8794 -0.7395 17 7 2.0299 -0.7124 -1.1850 18 6 1.8048 -0.3602 -2.4663 19 8 1.1372 0.6238 -2.7177 20 6 2.3703 -1.1712 -3.5665 21 7 3.0038 -2.3053 -3.3118 22 7 3.5122 -3.0448 -4.2257 23 6 3.4573 -2.7549 -5.5102 24 6 2.8109 -1.5771 -5.9182 25 6 2.7078 -1.1958 -7.2638 26 6 2.0690 -0.0353 -7.5824 27 6 1.5083 0.7719 -6.5942 28 6 1.5897 0.4309 -5.2763 29 6 2.2427 -0.7505 -4.9116 30 1 -0.3634 -1.0276 -0.0079 31 1 -0.3633 0.5069 0.8939 32 1 -0.3634 0.5207 -0.8860 33 1 0.3729 -2.0378 1.1534 34 1 -1.4722 -4.0453 3.0750 35 1 4.1681 -0.8636 0.6564 36 1 3.4924 -2.4072 1.2762 37 1 2.1850 -2.7701 -0.7137 38 1 3.6680 -2.0360 -1.3972 39 1 3.9031 -3.4150 -6.2395 40 1 3.1347 -1.8139 -8.0397 41 1 1.9927 0.2622 -8.6178 42 1 1.0040 1.6843 -6.8765 43 1 1.1541 1.0681 -4.5209 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986547182.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:02 Heat of formation + Delta-G solvation = 79.454806 kcal Electronic energy + Delta-G solvation = -27535.938807 eV Core-core repulsion = 23775.728162 eV Total energy + Delta-G solvation = -3760.210644 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.70508 -39.78761 -38.29167 -37.53691 -34.06666 -33.57038 -32.04490 -31.70416 -30.75508 -30.51218 -28.81319 -25.92703 -25.16876 -24.48843 -23.65716 -23.20287 -22.29750 -20.15726 -19.22967 -18.43627 -18.26313 -17.42444 -16.89180 -16.33984 -16.16261 -15.57442 -15.13956 -14.88912 -14.50708 -14.31360 -14.06078 -13.80477 -13.71051 -13.18792 -12.93075 -12.81247 -12.72473 -12.56485 -12.22487 -11.88395 -11.71270 -11.55284 -11.15414 -10.94383 -10.90288 -10.80003 -10.65571 -10.55423 -10.22557 -10.03970 -9.78013 -9.66642 -9.58437 -9.52941 -8.91621 -8.77728 -8.34064 -6.99821 -5.78570 -3.08225 -0.26218 0.33558 1.33491 2.46411 2.94007 3.00666 3.43784 3.48529 3.49395 3.73202 3.76819 4.09506 4.17630 4.30639 4.42105 4.57279 4.70880 4.75241 4.91977 5.13935 5.18101 5.28736 5.34690 5.47287 5.52297 5.62519 5.66349 5.75959 5.81547 5.88105 5.93695 6.04085 6.05775 6.14430 6.32859 6.38741 6.43511 6.48560 6.59323 6.65572 6.78747 6.87889 7.02404 7.68646 7.71262 8.14519 8.39482 8.54625 9.51005 10.06198 10.41215 11.43578 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.023442 B = 0.003007 C = 0.002858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.158888 B = 9310.267832 C = 9795.257050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.124 3.876 3 H 0.075 0.925 4 C 0.172 3.828 5 H 0.071 0.929 6 N -0.713 5.713 7 C -0.244 4.244 8 H 0.072 0.928 9 C -0.010 4.010 10 N -0.931 5.931 11 Si 0.908 3.092 12 H -0.286 1.286 13 H -0.292 1.292 14 H -0.286 1.286 15 C -0.163 4.163 16 C 0.107 3.893 17 N -0.577 5.577 18 C 0.584 3.416 19 O -0.537 6.537 20 C 0.077 3.923 21 N -0.221 5.221 22 N -0.265 5.265 23 C 0.097 3.903 24 C -0.086 4.086 25 C -0.098 4.098 26 C -0.097 4.097 27 C -0.105 4.105 28 C -0.088 4.088 29 C -0.047 4.047 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.054 0.946 33 H 0.388 0.612 34 H 0.256 0.744 35 H 0.060 0.940 36 H 0.089 0.911 37 H 0.076 0.924 38 H 0.088 0.912 39 H 0.179 0.821 40 H 0.140 0.860 41 H 0.132 0.868 42 H 0.134 0.866 43 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.430 6.901 -21.571 24.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.021 3.979 3 H 0.093 0.907 4 C 0.060 3.940 5 H 0.089 0.911 6 N -0.355 5.355 7 C -0.375 4.375 8 H 0.089 0.911 9 C -0.206 4.206 10 N -0.578 5.578 11 Si 0.739 3.261 12 H -0.213 1.213 13 H -0.218 1.218 14 H -0.212 1.212 15 C -0.204 4.204 16 C -0.015 4.015 17 N -0.307 5.307 18 C 0.370 3.630 19 O -0.416 6.416 20 C -0.080 4.080 21 N -0.057 5.057 22 N -0.097 5.097 23 C -0.078 4.078 24 C -0.094 4.094 25 C -0.118 4.118 26 C -0.116 4.116 27 C -0.124 4.124 28 C -0.107 4.107 29 C -0.055 4.055 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.073 0.927 33 H 0.225 0.775 34 H 0.066 0.934 35 H 0.079 0.921 36 H 0.107 0.893 37 H 0.095 0.905 38 H 0.106 0.894 39 H 0.196 0.804 40 H 0.157 0.843 41 H 0.150 0.850 42 H 0.151 0.849 43 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 8.600 6.245 -20.280 22.896 hybrid contribution -0.655 0.267 -0.489 0.860 sum 7.944 6.512 -20.768 23.170 Atomic orbital electron populations 1.21929 0.93911 1.03167 1.01782 1.22169 0.95668 0.95748 0.84363 0.90697 1.21200 0.89235 0.91738 0.91822 0.91081 1.42544 1.32535 1.51501 1.08934 1.19190 1.10766 1.21379 0.86133 0.91054 1.24742 0.97938 1.00033 0.97882 1.69648 1.18318 1.35502 1.34347 0.86269 0.76959 0.78032 0.84883 1.21267 1.21777 1.21242 1.23625 0.98984 1.02379 0.95451 1.22671 0.95545 0.87646 0.95630 1.48565 1.49645 1.28300 1.04225 1.17018 0.80940 0.83927 0.81122 1.90581 1.41001 1.27594 1.82398 1.23038 0.96984 0.94771 0.93233 1.73074 1.04567 1.01739 1.26324 1.72717 1.13966 1.23598 0.99389 1.24816 0.93443 0.93850 0.95641 1.18925 0.99460 0.96044 0.94934 1.20929 0.99517 0.97395 0.93963 1.21155 0.96136 0.94166 1.00164 1.21272 0.98423 0.99949 0.92802 1.22068 0.95365 0.95161 0.98067 1.18614 0.98324 0.96446 0.92114 0.91450 0.91187 0.92665 0.77525 0.93383 0.92137 0.89285 0.90537 0.89384 0.80368 0.84263 0.85020 0.84858 0.80761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.83 8.51 37.16 0.32 -2.51 16 2 C 0.12 2.20 3.42 -66.95 -0.23 1.97 16 3 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 4 C 0.17 3.31 3.47 -66.10 -0.23 3.08 16 5 H 0.07 1.33 8.09 -51.93 -0.42 0.91 16 6 N -0.71 -17.08 4.56 -51.66 -0.24 -17.31 16 7 C -0.24 -6.49 9.96 -15.06 -0.15 -6.64 16 8 H 0.07 1.83 7.83 -52.48 -0.41 1.42 16 9 C -0.01 -0.27 5.50 -17.43 -0.10 -0.36 16 10 N -0.93 -27.63 13.06 55.49 0.72 -26.91 16 11 Si 0.91 22.03 29.55 -169.99 -5.02 17.00 16 12 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 13 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 14 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 15 C -0.16 -2.80 6.79 -24.47 -0.17 -2.97 16 16 C 0.11 1.84 5.87 -2.41 -0.01 1.83 16 17 N -0.58 -10.02 3.06 -163.95 -0.50 -10.52 16 18 C 0.58 10.03 7.61 -12.30 -0.09 9.93 16 19 O -0.54 -9.56 12.61 5.33 0.07 -9.49 16 20 C 0.08 1.21 6.84 -82.43 -0.56 0.64 16 21 N -0.22 -3.53 7.87 33.56 0.26 -3.27 16 22 N -0.27 -3.78 11.42 30.90 0.35 -3.43 16 23 C 0.10 1.01 11.20 -16.75 -0.19 0.83 16 24 C -0.09 -0.92 5.75 -106.85 -0.61 -1.54 16 25 C -0.10 -0.73 9.84 -39.55 -0.39 -1.11 16 26 C -0.10 -0.67 9.95 -39.87 -0.40 -1.07 16 27 C -0.10 -0.90 9.95 -39.83 -0.40 -1.30 16 28 C -0.09 -1.04 9.27 -39.66 -0.37 -1.41 16 29 C -0.05 -0.63 5.77 -106.57 -0.61 -1.25 16 30 H 0.07 1.44 6.21 -51.93 -0.32 1.11 16 31 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 32 H 0.05 1.01 6.87 -51.93 -0.36 0.66 16 33 H 0.39 10.05 5.68 -40.82 -0.23 9.82 16 34 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 35 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 36 H 0.09 1.66 8.14 -51.93 -0.42 1.23 16 37 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 38 H 0.09 1.44 6.10 -51.93 -0.32 1.12 16 39 H 0.18 1.07 8.06 -52.49 -0.42 0.65 16 40 H 0.14 0.56 8.06 -52.49 -0.42 0.14 16 41 H 0.13 0.51 8.06 -52.48 -0.42 0.09 16 42 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 43 H 0.18 2.32 5.12 -52.49 -0.27 2.05 16 LS Contribution 350.30 15.07 5.28 5.28 Total: -1.00 -31.72 350.30 -8.53 -40.26 By element: Atomic # 1 Polarization: 15.55 SS G_CDS: -5.27 Total: 10.28 kcal Atomic # 6 Polarization: 2.31 SS G_CDS: -4.19 Total: -1.88 kcal Atomic # 7 Polarization: -62.05 SS G_CDS: 0.60 Total: -61.45 kcal Atomic # 8 Polarization: -9.56 SS G_CDS: 0.07 Total: -9.49 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.72 -8.53 -40.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986547182.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.713 kcal (2) G-P(sol) polarization free energy of solvation -31.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.258 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds