Wall clock time and date at job start Tue Mar 31 2020 14:42:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09002 * 109.87860 * 2 1 4 4 C 1.54330 * 109.88638 * 121.01855 * 2 1 3 5 5 H 1.08997 * 110.71429 * 23.06844 * 4 2 1 6 6 N 1.46495 * 110.71816 * 259.97307 * 4 2 1 7 7 C 1.36936 * 119.99739 * 154.99895 * 6 4 2 8 8 H 1.07999 * 120.00389 * 359.97438 * 7 6 4 9 9 C 1.38813 * 120.00038 * 179.72549 * 7 6 4 10 10 N 1.31614 * 120.00147 * 0.27307 * 9 7 6 11 11 Si 1.86805 * 120.00002 * 180.27310 * 9 7 6 12 12 H 1.48503 * 109.46896 * 89.99915 * 11 9 7 13 13 H 1.48493 * 109.47108 * 209.99852 * 11 9 7 14 14 H 1.48499 * 109.47285 * 329.99928 * 11 9 7 15 15 C 1.55155 * 102.94333 * 141.61122 * 4 2 1 16 16 C 1.54912 * 101.57864 * 324.49763 * 15 4 2 17 17 N 1.47020 * 109.88543 * 238.82833 * 2 1 3 18 18 C 1.34781 * 125.64609 * 61.60061 * 17 2 1 19 19 O 1.21536 * 120.00246 * 0.02562 * 18 17 2 20 20 C 1.47911 * 119.99904 * 180.02562 * 18 17 2 21 21 N 1.32385 * 120.63683 * 5.42608 * 20 18 17 22 22 N 1.28085 * 123.17699 * 179.73639 * 21 20 18 23 23 C 1.31798 * 123.50225 * 0.56366 * 22 21 20 24 24 C 1.40406 * 119.13452 * 359.72277 * 23 22 21 25 25 C 1.40236 * 122.74257 * 179.97438 * 24 23 22 26 26 C 1.36258 * 119.37001 * 180.02562 * 25 24 23 27 27 C 1.39375 * 121.07646 * 0.02562 * 26 25 24 28 28 C 1.36363 * 121.08467 * 359.92602 * 27 26 25 29 29 C 1.39829 * 119.41921 * 0.09980 * 28 27 26 30 30 H 1.09003 * 109.46920 * 298.98375 * 1 2 3 31 31 H 1.08992 * 109.47369 * 58.97952 * 1 2 3 32 32 H 1.09003 * 109.47316 * 178.98491 * 1 2 3 33 33 H 0.97000 * 120.00752 * 334.99684 * 6 4 2 34 34 H 0.96996 * 120.00509 * 179.97438 * 10 9 7 35 35 H 1.08994 * 111.00522 * 82.57093 * 15 4 2 36 36 H 1.08996 * 111.00309 * 206.43069 * 15 4 2 37 37 H 1.09003 * 110.37094 * 278.16996 * 16 15 4 38 38 H 1.09001 * 110.45710 * 155.90109 * 16 15 4 39 39 H 1.07992 * 120.43413 * 179.75112 * 23 22 21 40 40 H 1.08003 * 120.31906 * 0.07307 * 25 24 23 41 41 H 1.07995 * 119.46293 * 179.97438 * 26 25 24 42 42 H 1.08001 * 119.45824 * 179.97438 * 27 26 25 43 43 H 1.08003 * 120.29128 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0549 -0.7479 1.2437 5 1 1.3040 -1.4414 1.6220 6 7 2.4555 0.1992 2.2872 7 6 2.4583 -0.1896 3.6002 8 1 2.1648 -1.1943 3.8665 9 6 2.8434 0.7059 4.5884 10 7 3.2007 1.9304 4.2639 11 14 2.8545 0.1732 6.3788 12 1 4.1854 -0.3910 6.7191 13 1 2.5778 1.3464 7.2461 14 1 1.8093 -0.8594 6.5946 15 6 3.2876 -1.5133 0.6944 16 6 2.8144 -1.8804 -0.7343 17 7 2.0300 -0.7156 -1.1829 18 6 1.8073 -0.3653 -2.4652 19 8 1.1420 0.6195 -2.7194 20 6 2.3726 -1.1794 -3.5631 21 7 3.0078 -2.3119 -3.3052 22 7 3.5114 -3.0566 -4.2175 23 6 3.4592 -2.7687 -5.5026 24 6 2.8166 -1.5899 -5.9135 25 6 2.7174 -1.2099 -7.2598 26 6 2.0784 -0.0502 -7.5814 27 6 1.5235 0.7630 -6.5948 28 6 1.6010 0.4231 -5.2765 29 6 2.2499 -0.7598 -4.9091 30 1 -0.3633 0.4980 0.8990 31 1 -0.3634 0.5296 -0.8806 32 1 -0.3634 -1.0275 -0.0182 33 1 2.7188 1.1016 2.0481 34 1 3.4694 2.5563 4.9545 35 1 4.1654 -0.8679 0.6615 36 1 3.4852 -2.4093 1.2827 37 1 2.1886 -2.7724 -0.7091 38 1 3.6704 -2.0369 -1.3907 39 1 3.9045 -3.4311 -6.2301 40 1 3.1426 -1.8309 -8.0344 41 1 2.0015 0.2441 -8.6176 42 1 1.0232 1.6769 -6.8792 43 1 1.1660 1.0626 -4.5226 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986547191.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:08 Heat of formation + Delta-G solvation = 73.207644 kcal Electronic energy + Delta-G solvation = -27195.041067 eV Core-core repulsion = 23434.559525 eV Total energy + Delta-G solvation = -3760.481542 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.77582 -39.82147 -38.35544 -37.51765 -34.20495 -33.66858 -32.11005 -31.76229 -30.88429 -30.57053 -29.07289 -26.00001 -25.19390 -24.56411 -23.55125 -22.88563 -22.37392 -20.33635 -19.63054 -18.59246 -18.34957 -17.26633 -17.00720 -16.31145 -16.25993 -15.66677 -15.12661 -14.93019 -14.64221 -14.40005 -14.18658 -13.75180 -13.60055 -13.31703 -13.02391 -12.89146 -12.81949 -12.61735 -12.12065 -11.98547 -11.89649 -11.70700 -11.37003 -11.07128 -11.01683 -10.86302 -10.79750 -10.54573 -10.22584 -10.02805 -9.88115 -9.74591 -9.71523 -9.60956 -8.91984 -8.83976 -8.44054 -7.02039 -5.80626 -3.10855 -0.33411 0.27017 1.27490 2.39201 2.84113 2.93429 3.42433 3.47794 3.49328 3.65242 3.68863 4.02311 4.10300 4.24255 4.36549 4.55832 4.64672 4.69348 4.86199 5.07526 5.13563 5.23218 5.29560 5.40696 5.42865 5.58818 5.62653 5.65195 5.76443 5.82359 5.88055 5.97457 6.03705 6.08282 6.11426 6.23972 6.37447 6.38671 6.47004 6.61013 6.66134 6.68877 6.95506 7.61709 7.67475 8.06375 8.36649 8.45795 9.48273 10.02423 10.37312 11.41610 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.026439 B = 0.002735 C = 0.002579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.768663 B =10234.243765 C =10853.103503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.123 3.877 3 H 0.082 0.918 4 C 0.177 3.823 5 H 0.069 0.931 6 N -0.714 5.714 7 C -0.242 4.242 8 H 0.073 0.927 9 C -0.010 4.010 10 N -0.931 5.931 11 Si 0.908 3.092 12 H -0.289 1.289 13 H -0.292 1.292 14 H -0.281 1.281 15 C -0.159 4.159 16 C 0.100 3.900 17 N -0.578 5.578 18 C 0.585 3.415 19 O -0.534 6.534 20 C 0.077 3.923 21 N -0.223 5.223 22 N -0.267 5.267 23 C 0.098 3.902 24 C -0.086 4.086 25 C -0.098 4.098 26 C -0.096 4.096 27 C -0.104 4.104 28 C -0.088 4.088 29 C -0.047 4.047 30 H 0.073 0.927 31 H 0.061 0.939 32 H 0.051 0.949 33 H 0.386 0.614 34 H 0.256 0.744 35 H 0.073 0.927 36 H 0.078 0.922 37 H 0.070 0.930 38 H 0.092 0.908 39 H 0.180 0.820 40 H 0.140 0.860 41 H 0.132 0.868 42 H 0.134 0.866 43 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.954 -6.909 -25.659 26.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.020 3.980 3 H 0.100 0.900 4 C 0.065 3.935 5 H 0.087 0.913 6 N -0.354 5.354 7 C -0.373 4.373 8 H 0.091 0.909 9 C -0.207 4.207 10 N -0.578 5.578 11 Si 0.739 3.261 12 H -0.217 1.217 13 H -0.218 1.218 14 H -0.207 1.207 15 C -0.200 4.200 16 C -0.022 4.022 17 N -0.309 5.309 18 C 0.370 3.630 19 O -0.412 6.412 20 C -0.080 4.080 21 N -0.060 5.060 22 N -0.098 5.098 23 C -0.076 4.076 24 C -0.093 4.093 25 C -0.118 4.118 26 C -0.115 4.115 27 C -0.123 4.123 28 C -0.107 4.107 29 C -0.055 4.055 30 H 0.092 0.908 31 H 0.080 0.920 32 H 0.070 0.930 33 H 0.220 0.780 34 H 0.066 0.934 35 H 0.092 0.908 36 H 0.096 0.904 37 H 0.088 0.912 38 H 0.110 0.890 39 H 0.197 0.803 40 H 0.158 0.842 41 H 0.150 0.850 42 H 0.152 0.848 43 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -1.800 -7.563 -24.364 25.574 hybrid contribution -0.164 0.902 -0.353 0.982 sum -1.964 -6.662 -24.717 25.674 Atomic orbital electron populations 1.22050 0.94561 1.01782 1.02868 1.22109 0.94677 0.97043 0.84179 0.89992 1.21264 0.93789 0.91540 0.86940 0.91273 1.42347 1.79299 1.11845 1.01928 1.19218 1.38233 0.97007 0.82877 0.90938 1.24762 1.01928 0.95887 0.98108 1.69660 1.51121 1.04656 1.32385 0.86178 0.77704 0.77255 0.84957 1.21668 1.21783 1.20679 1.23628 1.01104 1.01770 0.93489 1.22704 0.95734 0.87247 0.96546 1.48458 1.49796 1.28379 1.04270 1.17038 0.80987 0.83900 0.81070 1.90597 1.41041 1.27267 1.82251 1.23032 0.96928 0.94806 0.93209 1.73042 1.04617 1.01929 1.26411 1.72691 1.14001 1.23685 0.99457 1.24805 0.93312 0.93926 0.95574 1.18919 0.99458 0.96013 0.94953 1.20936 0.99472 0.97478 0.93943 1.21169 0.96023 0.94101 1.00223 1.21286 0.98340 0.99894 0.92797 1.22077 0.95405 0.95138 0.98079 1.18610 0.98382 0.96418 0.92096 0.90822 0.91964 0.92970 0.78007 0.93393 0.90785 0.90358 0.91224 0.89027 0.80342 0.84228 0.84963 0.84784 0.80734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.56 9.09 37.15 0.34 -2.23 16 2 C 0.12 2.20 3.21 -66.95 -0.22 1.99 16 3 H 0.08 1.61 7.71 -51.93 -0.40 1.21 16 4 C 0.18 3.43 3.14 -66.10 -0.21 3.22 16 5 H 0.07 1.34 7.80 -51.93 -0.40 0.94 16 6 N -0.71 -17.37 5.22 -51.65 -0.27 -17.64 16 7 C -0.24 -6.51 9.96 -15.06 -0.15 -6.66 16 8 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 9 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 10 N -0.93 -27.68 13.06 55.49 0.72 -26.96 16 11 Si 0.91 22.04 29.55 -169.99 -5.02 17.01 16 12 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 13 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 14 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 15 C -0.16 -2.75 6.77 -24.58 -0.17 -2.92 16 16 C 0.10 1.55 5.88 -2.53 -0.01 1.53 16 17 N -0.58 -9.57 3.07 -164.10 -0.50 -10.07 16 18 C 0.58 9.59 7.61 -12.30 -0.09 9.50 16 19 O -0.53 -9.29 12.64 5.33 0.07 -9.22 16 20 C 0.08 1.14 6.84 -82.42 -0.56 0.57 16 21 N -0.22 -3.27 7.87 33.56 0.26 -3.01 16 22 N -0.27 -3.47 11.41 30.90 0.35 -3.12 16 23 C 0.10 0.93 11.20 -16.75 -0.19 0.74 16 24 C -0.09 -0.86 5.75 -106.85 -0.61 -1.47 16 25 C -0.10 -0.67 9.84 -39.54 -0.39 -1.06 16 26 C -0.10 -0.62 9.95 -39.87 -0.40 -1.01 16 27 C -0.10 -0.85 9.95 -39.83 -0.40 -1.24 16 28 C -0.09 -1.01 9.27 -39.66 -0.37 -1.37 16 29 C -0.05 -0.60 5.77 -106.57 -0.61 -1.21 16 30 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 31 H 0.06 1.03 6.90 -51.93 -0.36 0.68 16 32 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.39 10.09 7.56 -40.82 -0.31 9.78 16 34 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 35 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 36 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 37 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.09 1.40 6.10 -51.93 -0.32 1.08 16 39 H 0.18 0.91 8.06 -52.49 -0.42 0.48 16 40 H 0.14 0.48 8.06 -52.48 -0.42 0.06 16 41 H 0.13 0.46 8.06 -52.49 -0.42 0.03 16 42 H 0.13 0.78 8.06 -52.49 -0.42 0.35 16 43 H 0.18 2.27 5.12 -52.48 -0.27 2.00 16 LS Contribution 354.14 15.07 5.34 5.34 Total: -1.00 -31.88 354.14 -8.60 -40.48 By element: Atomic # 1 Polarization: 14.60 SS G_CDS: -5.41 Total: 9.19 kcal Atomic # 6 Polarization: 2.13 SS G_CDS: -4.14 Total: -2.01 kcal Atomic # 7 Polarization: -61.36 SS G_CDS: 0.57 Total: -60.79 kcal Atomic # 8 Polarization: -9.29 SS G_CDS: 0.07 Total: -9.22 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.88 -8.60 -40.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986547191.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.686 kcal (2) G-P(sol) polarization free energy of solvation -31.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.479 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds