Wall clock time and date at job start Tue Mar 31 2020 14:42:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.99656 * 2 1 4 4 C 1.54327 * 109.87925 * 121.08944 * 2 1 3 5 5 H 1.09000 * 110.87368 * 23.17761 * 4 2 1 6 6 N 1.46500 * 110.72384 * 259.97277 * 4 2 1 7 7 C 1.36930 * 120.00549 * 160.02619 * 6 4 2 8 8 H 1.08002 * 119.99985 * 0.02562 * 7 6 4 9 9 C 1.38814 * 120.00421 * 180.02562 * 7 6 4 10 10 N 1.31616 * 119.99934 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 120.00000 * 179.97438 * 9 7 6 12 12 H 1.48497 * 109.47343 * 359.97438 * 11 9 7 13 13 H 1.48502 * 109.47189 * 239.99987 * 11 9 7 14 14 H 1.48493 * 109.47005 * 120.00077 * 11 9 7 15 15 C 1.55162 * 102.94053 * 141.61080 * 4 2 1 16 16 C 1.54906 * 101.58069 * 324.49674 * 15 4 2 17 17 N 1.47014 * 109.88447 * 238.89685 * 2 1 3 18 18 C 1.34775 * 125.64734 * 61.60692 * 17 2 1 19 19 O 1.21550 * 120.00304 * 356.45778 * 18 17 2 20 20 C 1.47863 * 120.00170 * 176.45613 * 18 17 2 21 21 C 1.40633 * 120.26240 * 206.02877 * 20 18 17 22 22 N 1.30855 * 121.65669 * 179.68808 * 21 20 18 23 23 C 1.33587 * 121.58518 * 0.59598 * 22 21 20 24 24 C 1.40641 * 121.63044 * 179.72165 * 23 22 21 25 25 N 1.31151 * 120.03956 * 179.97438 * 24 23 22 26 26 C 1.32493 * 122.89440 * 0.02684 * 25 24 23 27 27 C 1.36321 * 121.70850 * 0.02562 * 26 25 24 28 28 C 1.40602 * 118.65013 * 359.96799 * 27 26 25 29 29 C 1.38986 * 120.26006 * 26.30946 * 20 18 17 30 30 H 1.08997 * 109.47328 * 298.90736 * 1 2 3 31 31 H 1.08995 * 109.47003 * 58.91349 * 1 2 3 32 32 H 1.09007 * 109.47174 * 178.91036 * 1 2 3 33 33 H 0.97005 * 119.99772 * 340.03146 * 6 4 2 34 34 H 0.97006 * 119.99753 * 359.97438 * 10 9 7 35 35 H 1.09007 * 111.00157 * 82.57163 * 15 4 2 36 36 H 1.08999 * 111.00482 * 206.42320 * 15 4 2 37 37 H 1.09002 * 110.36546 * 155.84703 * 16 15 4 38 38 H 1.08998 * 110.36975 * 278.17068 * 16 15 4 39 39 H 1.08003 * 119.16849 * 359.97438 * 21 20 18 40 40 H 1.07999 * 119.97760 * 359.97438 * 24 23 22 41 41 H 1.07991 * 119.14952 * 179.97438 * 26 25 24 42 42 H 1.07998 * 120.67574 * 180.02562 * 27 26 25 43 43 H 1.08003 * 121.11299 * 359.97438 * 29 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0548 -0.7494 1.2428 5 1 1.3064 -1.4457 1.6213 6 7 2.4554 0.1962 2.2876 7 6 2.5574 -0.2222 3.5874 8 1 2.3429 -1.2496 3.8424 9 6 2.9365 0.6739 4.5774 10 7 3.1984 1.9258 4.2667 11 14 3.0750 0.1031 6.3507 12 1 2.7295 -1.3386 6.4351 13 1 2.1394 0.8862 7.1973 14 1 4.4656 0.3083 6.8295 15 6 3.2876 -1.5142 0.6926 16 6 2.8145 -1.8795 -0.7365 17 7 2.0300 -0.7142 -1.1837 18 6 1.8074 -0.3623 -2.4656 19 8 1.0891 0.5847 -2.7199 20 6 2.4371 -1.1281 -3.5625 21 6 2.6848 -0.5150 -4.8037 22 7 3.2460 -1.1651 -5.7910 23 6 3.6008 -2.4475 -5.6723 24 6 4.1987 -3.1488 -6.7347 25 7 4.5351 -4.4074 -6.5837 26 6 4.3379 -5.0747 -5.4562 27 6 3.7648 -4.4880 -4.3672 28 6 3.3775 -3.1391 -4.4539 29 6 2.7836 -2.4613 -3.3770 30 1 -0.3634 0.4967 0.8996 31 1 -0.3633 0.5306 -0.8800 32 1 -0.3634 -1.0275 -0.0195 33 1 2.6483 1.1189 2.0586 34 1 3.1269 2.2220 3.3457 35 1 4.1654 -0.8688 0.6606 36 1 3.4851 -2.4110 1.2799 37 1 3.6716 -2.0340 -1.3919 38 1 2.1886 -2.7716 -0.7125 39 1 2.4091 0.5198 -4.9440 40 1 4.3809 -2.6506 -7.6754 41 1 4.6381 -6.1104 -5.3985 42 1 3.6123 -5.0476 -3.4562 43 1 2.6016 -2.9594 -2.4362 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986576127.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:43 Heat of formation + Delta-G solvation = 61.754205 kcal Electronic energy + Delta-G solvation = -26967.373407 eV Core-core repulsion = 23206.395207 eV Total energy + Delta-G solvation = -3760.978200 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.70943 -40.27472 -38.40756 -37.48396 -34.83288 -34.13444 -32.45567 -31.46248 -31.14172 -30.67094 -29.00450 -25.95060 -25.32088 -24.85977 -23.48701 -22.85496 -22.75526 -20.77276 -19.81791 -18.91281 -17.91887 -17.53233 -17.42383 -16.68006 -16.31337 -15.50808 -15.32280 -15.14515 -14.92580 -14.65282 -14.33698 -13.89873 -13.76424 -13.64361 -13.57174 -13.13332 -13.07071 -12.90022 -12.72628 -12.46662 -12.15721 -11.69517 -11.41711 -11.24548 -11.05838 -10.71547 -10.63900 -10.42589 -10.35866 -10.18868 -10.11752 -9.76168 -9.66155 -9.30843 -9.04675 -8.90320 -8.71143 -7.20075 -6.22541 -3.25309 -0.36672 0.10506 1.30979 2.22774 2.71699 2.94759 3.44793 3.50979 3.60012 3.62817 3.69078 3.88100 3.98457 4.08379 4.25182 4.28645 4.50636 4.56316 4.72219 4.82915 4.96642 5.01485 5.05583 5.09421 5.19895 5.24442 5.31439 5.47238 5.53863 5.54225 5.56484 5.69829 5.81930 5.85360 5.89284 6.06759 6.10485 6.22009 6.36258 6.41259 6.47236 6.69811 7.23181 7.40320 7.50188 7.68097 7.96847 8.62366 9.05805 9.92455 10.05462 11.25251 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.020873 B = 0.002707 C = 0.002506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.131633 B =10340.070109 C =11169.868393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.127 3.873 3 H 0.079 0.921 4 C 0.183 3.817 5 H 0.068 0.932 6 N -0.726 5.726 7 C -0.337 4.337 8 H 0.067 0.933 9 C -0.040 4.040 10 N -0.940 5.940 11 Si 1.086 2.914 12 H -0.294 1.294 13 H -0.292 1.292 14 H -0.292 1.292 15 C -0.156 4.156 16 C 0.086 3.914 17 N -0.599 5.599 18 C 0.573 3.427 19 O -0.528 6.528 20 C -0.157 4.157 21 C 0.183 3.817 22 N -0.459 5.459 23 C 0.080 3.920 24 C 0.163 3.837 25 N -0.470 5.470 26 C 0.072 3.928 27 C -0.134 4.134 28 C -0.085 4.085 29 C -0.036 4.036 30 H 0.071 0.929 31 H 0.065 0.935 32 H 0.052 0.948 33 H 0.369 0.631 34 H 0.257 0.743 35 H 0.076 0.924 36 H 0.080 0.920 37 H 0.075 0.925 38 H 0.072 0.928 39 H 0.176 0.824 40 H 0.174 0.826 41 H 0.161 0.839 42 H 0.145 0.855 43 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.187 -13.396 -18.296 22.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.024 3.976 3 H 0.097 0.903 4 C 0.071 3.929 5 H 0.086 0.914 6 N -0.367 5.367 7 C -0.468 4.468 8 H 0.085 0.915 9 C -0.239 4.239 10 N -0.584 5.584 11 Si 0.916 3.084 12 H -0.220 1.220 13 H -0.219 1.219 14 H -0.219 1.219 15 C -0.197 4.197 16 C -0.037 4.037 17 N -0.332 5.332 18 C 0.360 3.640 19 O -0.406 6.406 20 C -0.163 4.163 21 C 0.008 3.992 22 N -0.167 5.167 23 C -0.044 4.044 24 C -0.011 4.011 25 N -0.178 5.178 26 C -0.071 4.071 27 C -0.155 4.155 28 C -0.092 4.092 29 C -0.062 4.062 30 H 0.090 0.910 31 H 0.084 0.916 32 H 0.071 0.929 33 H 0.203 0.797 34 H 0.068 0.932 35 H 0.095 0.905 36 H 0.098 0.902 37 H 0.093 0.907 38 H 0.090 0.910 39 H 0.193 0.807 40 H 0.191 0.809 41 H 0.178 0.822 42 H 0.163 0.837 43 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 0.704 -12.843 -18.298 22.366 hybrid contribution -0.761 -0.318 -0.068 0.827 sum -0.057 -13.161 -18.365 22.594 Atomic orbital electron populations 1.22063 0.94394 1.01876 1.03019 1.21989 0.94796 0.96809 0.84026 0.90313 1.21182 0.93520 0.91483 0.86751 0.91438 1.42358 1.82035 1.08411 1.03931 1.20042 1.44938 0.97050 0.84755 0.91452 1.25811 0.99316 0.94425 1.04321 1.70825 1.51357 1.15875 1.20356 0.83149 0.76562 0.74035 0.74620 1.22044 1.21906 1.21937 1.23606 1.01498 1.02056 0.92545 1.22804 0.94702 0.88398 0.97791 1.48460 1.51411 1.28493 1.04809 1.17592 0.81349 0.83913 0.81141 1.90800 1.37829 1.28922 1.83000 1.21152 1.02893 0.95338 0.96930 1.23176 0.89515 1.00395 0.86078 1.67998 1.10856 1.06963 1.30861 1.20103 0.98724 0.91442 0.94096 1.23154 0.91378 0.89060 0.97468 1.67462 1.16115 1.08606 1.25649 1.22311 0.96198 1.00426 0.88123 1.21997 0.99017 0.93464 1.01002 1.18935 1.00005 0.95562 0.94738 1.22616 0.91494 0.93470 0.98624 0.90997 0.91617 0.92925 0.79706 0.93188 0.90535 0.90186 0.90707 0.91029 0.80680 0.80860 0.82211 0.83703 0.81968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.41 9.09 37.16 0.34 -2.07 16 2 C 0.13 2.07 3.23 -66.96 -0.22 1.85 16 3 H 0.08 1.44 7.69 -51.93 -0.40 1.04 16 4 C 0.18 3.25 3.11 -66.09 -0.21 3.05 16 5 H 0.07 1.22 7.84 -51.93 -0.41 0.81 16 6 N -0.73 -16.75 5.25 -51.65 -0.27 -17.02 16 7 C -0.34 -8.82 9.98 -15.06 -0.15 -8.97 16 8 H 0.07 1.73 7.83 -52.49 -0.41 1.32 16 9 C -0.04 -1.12 5.50 -17.43 -0.10 -1.21 16 10 N -0.94 -28.00 13.70 55.49 0.76 -27.24 16 11 Si 1.09 24.87 29.92 -169.99 -5.09 19.78 16 12 H -0.29 -6.27 7.11 56.52 0.40 -5.87 16 13 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 14 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 15 C -0.16 -2.32 6.77 -24.58 -0.17 -2.49 16 16 C 0.09 0.98 5.02 -2.53 -0.01 0.97 16 17 N -0.60 -8.36 3.06 -164.12 -0.50 -8.86 16 18 C 0.57 8.20 7.48 -12.32 -0.09 8.11 16 19 O -0.53 -9.07 15.56 5.32 0.08 -8.99 16 20 C -0.16 -1.84 5.73 -104.78 -0.60 -2.44 16 21 C 0.18 2.10 10.72 -17.06 -0.18 1.92 16 22 N -0.46 -5.30 10.33 -10.65 -0.11 -5.41 16 23 C 0.08 0.86 6.62 -84.81 -0.56 0.30 16 24 C 0.16 1.54 11.25 -16.94 -0.19 1.35 16 25 N -0.47 -4.50 10.28 -13.11 -0.13 -4.64 16 26 C 0.07 0.55 11.08 -17.96 -0.20 0.36 16 27 C -0.13 -1.00 9.88 -39.38 -0.39 -1.39 16 28 C -0.09 -0.83 5.75 -106.79 -0.61 -1.44 16 29 C -0.04 -0.35 7.85 -38.48 -0.30 -0.65 16 30 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 31 H 0.06 1.06 6.79 -51.93 -0.35 0.70 16 32 H 0.05 0.74 8.14 -51.92 -0.42 0.32 16 33 H 0.37 8.98 6.34 -40.82 -0.26 8.72 16 34 H 0.26 7.54 6.77 -40.82 -0.28 7.26 16 35 H 0.08 1.28 8.14 -51.92 -0.42 0.85 16 36 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.07 0.73 6.12 -51.93 -0.32 0.42 16 38 H 0.07 0.65 7.32 -51.93 -0.38 0.27 16 39 H 0.18 1.84 7.85 -52.48 -0.41 1.42 16 40 H 0.17 1.27 8.06 -52.49 -0.42 0.84 16 41 H 0.16 0.77 8.06 -52.49 -0.42 0.35 16 42 H 0.15 0.67 8.06 -52.49 -0.42 0.24 16 43 H 0.16 1.26 4.57 -52.48 -0.24 1.02 16 LS Contribution 354.32 15.07 5.34 5.34 Total: -1.00 -32.45 354.32 -8.77 -41.22 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: -5.21 Total: 8.60 kcal Atomic # 6 Polarization: 0.86 SS G_CDS: -3.64 Total: -2.78 kcal Atomic # 7 Polarization: -62.91 SS G_CDS: -0.26 Total: -63.17 kcal Atomic # 8 Polarization: -9.07 SS G_CDS: 0.08 Total: -8.99 kcal Atomic # 14 Polarization: 24.87 SS G_CDS: -5.09 Total: 19.78 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.45 -8.77 -41.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986576127.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.973 kcal (2) G-P(sol) polarization free energy of solvation -32.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.219 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds