Wall clock time and date at job start Tue Mar 31 2020 14:42:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.99656 * 2 1 4 4 C 1.54327 * 109.87925 * 121.08944 * 2 1 3 5 5 H 1.09000 * 110.87368 * 23.17761 * 4 2 1 6 6 N 1.46500 * 110.72384 * 259.97277 * 4 2 1 7 7 C 1.36930 * 120.00549 * 160.02619 * 6 4 2 8 8 H 1.08002 * 119.99985 * 0.02562 * 7 6 4 9 9 C 1.38814 * 120.00421 * 180.02562 * 7 6 4 10 10 N 1.31616 * 119.99934 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 120.00000 * 179.97438 * 9 7 6 12 12 H 1.48497 * 109.47343 * 359.97438 * 11 9 7 13 13 H 1.48502 * 109.47189 * 239.99987 * 11 9 7 14 14 H 1.48493 * 109.47005 * 120.00077 * 11 9 7 15 15 C 1.55162 * 102.94053 * 141.61080 * 4 2 1 16 16 C 1.54906 * 101.58069 * 324.49674 * 15 4 2 17 17 N 1.47014 * 109.88447 * 238.89685 * 2 1 3 18 18 C 1.34775 * 125.64734 * 61.60692 * 17 2 1 19 19 O 1.21550 * 120.00304 * 356.45778 * 18 17 2 20 20 C 1.47863 * 120.00170 * 176.45613 * 18 17 2 21 21 C 1.40633 * 120.26240 * 206.02877 * 20 18 17 22 22 N 1.30855 * 121.65669 * 179.68808 * 21 20 18 23 23 C 1.33587 * 121.58518 * 0.59598 * 22 21 20 24 24 C 1.40641 * 121.63044 * 179.72165 * 23 22 21 25 25 N 1.31151 * 120.03956 * 179.97438 * 24 23 22 26 26 C 1.32493 * 122.89440 * 0.02684 * 25 24 23 27 27 C 1.36321 * 121.70850 * 0.02562 * 26 25 24 28 28 C 1.40602 * 118.65013 * 359.96799 * 27 26 25 29 29 C 1.38986 * 120.26006 * 26.30946 * 20 18 17 30 30 H 1.08997 * 109.47328 * 298.90736 * 1 2 3 31 31 H 1.08995 * 109.47003 * 58.91349 * 1 2 3 32 32 H 1.09007 * 109.47174 * 178.91036 * 1 2 3 33 33 H 0.97005 * 119.99772 * 340.03146 * 6 4 2 34 34 H 0.97006 * 119.99753 * 359.97438 * 10 9 7 35 35 H 1.09007 * 111.00157 * 82.57163 * 15 4 2 36 36 H 1.08999 * 111.00482 * 206.42320 * 15 4 2 37 37 H 1.09002 * 110.36546 * 155.84703 * 16 15 4 38 38 H 1.08998 * 110.36975 * 278.17068 * 16 15 4 39 39 H 1.08003 * 119.16849 * 359.97438 * 21 20 18 40 40 H 1.07999 * 119.97760 * 359.97438 * 24 23 22 41 41 H 1.07991 * 119.14952 * 179.97438 * 26 25 24 42 42 H 1.07998 * 120.67574 * 180.02562 * 27 26 25 43 43 H 1.08003 * 121.11299 * 359.97438 * 29 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0548 -0.7494 1.2428 5 1 1.3064 -1.4457 1.6213 6 7 2.4554 0.1962 2.2876 7 6 2.5574 -0.2222 3.5874 8 1 2.3429 -1.2496 3.8424 9 6 2.9365 0.6739 4.5774 10 7 3.1984 1.9258 4.2667 11 14 3.0750 0.1031 6.3507 12 1 2.7295 -1.3386 6.4351 13 1 2.1394 0.8862 7.1973 14 1 4.4656 0.3083 6.8295 15 6 3.2876 -1.5142 0.6926 16 6 2.8145 -1.8795 -0.7365 17 7 2.0300 -0.7142 -1.1837 18 6 1.8074 -0.3623 -2.4656 19 8 1.0891 0.5847 -2.7199 20 6 2.4371 -1.1281 -3.5625 21 6 2.6848 -0.5150 -4.8037 22 7 3.2460 -1.1651 -5.7910 23 6 3.6008 -2.4475 -5.6723 24 6 4.1987 -3.1488 -6.7347 25 7 4.5351 -4.4074 -6.5837 26 6 4.3379 -5.0747 -5.4562 27 6 3.7648 -4.4880 -4.3672 28 6 3.3775 -3.1391 -4.4539 29 6 2.7836 -2.4613 -3.3770 30 1 -0.3634 0.4967 0.8996 31 1 -0.3633 0.5306 -0.8800 32 1 -0.3634 -1.0275 -0.0195 33 1 2.6483 1.1189 2.0586 34 1 3.1269 2.2220 3.3457 35 1 4.1654 -0.8688 0.6606 36 1 3.4851 -2.4110 1.2799 37 1 3.6716 -2.0340 -1.3919 38 1 2.1886 -2.7716 -0.7125 39 1 2.4091 0.5198 -4.9440 40 1 4.3809 -2.6506 -7.6754 41 1 4.6381 -6.1104 -5.3985 42 1 3.6123 -5.0476 -3.4562 43 1 2.6016 -2.9594 -2.4362 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986576127.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:42 Heat of formation + Delta-G solvation = 40.079307 kcal Electronic energy + Delta-G solvation = -26968.313301 eV Core-core repulsion = 23206.395207 eV Total energy + Delta-G solvation = -3761.918094 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.50197 -41.33979 -39.34951 -38.59229 -36.38582 -35.14211 -33.60676 -32.74835 -32.22732 -31.48888 -30.49935 -27.00463 -26.51035 -25.77195 -25.04958 -23.94319 -23.65279 -22.01482 -20.97369 -19.80147 -19.40587 -18.65000 -18.27989 -17.73566 -17.43023 -16.70306 -16.35944 -16.13270 -16.06320 -15.72446 -15.43341 -15.22988 -14.98213 -14.75172 -14.48746 -14.41659 -14.03250 -13.89005 -13.72475 -13.49214 -13.41701 -13.01552 -12.76512 -12.71594 -12.40941 -12.17053 -11.98321 -11.82892 -11.71433 -11.43729 -11.22753 -11.01422 -10.91416 -10.55828 -10.50024 -9.86912 -9.56342 -9.13804 -8.37262 -5.33591 -1.09898 -0.65383 0.60292 1.33351 1.59596 1.62760 1.72062 1.82797 2.04226 2.72716 2.89627 2.91955 3.09652 3.23810 3.39023 3.44352 3.46482 3.54041 3.59616 3.64585 3.78560 3.93557 4.05314 4.18458 4.20393 4.23913 4.26960 4.36011 4.45839 4.50576 4.56566 4.61757 4.78660 4.80503 4.89990 4.93140 5.11669 5.12924 5.14983 5.21800 5.34360 5.47412 5.63365 6.28459 6.48991 6.49763 6.83464 6.85376 7.06409 7.95124 8.08519 9.14141 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.020873 B = 0.002707 C = 0.002506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.131633 B =10340.070109 C =11169.868393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.134 3.866 3 H 0.048 0.952 4 C 0.176 3.824 5 H 0.073 0.927 6 N -0.742 5.742 7 C -0.322 4.322 8 H 0.077 0.923 9 C -0.106 4.106 10 N -0.979 5.979 11 Si 1.131 2.869 12 H -0.265 1.265 13 H -0.296 1.296 14 H -0.295 1.295 15 C -0.148 4.148 16 C 0.091 3.909 17 N -0.599 5.599 18 C 0.574 3.426 19 O -0.566 6.566 20 C -0.173 4.173 21 C 0.174 3.826 22 N -0.472 5.472 23 C 0.062 3.938 24 C 0.151 3.849 25 N -0.482 5.482 26 C 0.066 3.934 27 C -0.121 4.121 28 C -0.097 4.097 29 C -0.014 4.014 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.072 0.928 33 H 0.357 0.643 34 H 0.243 0.757 35 H 0.053 0.947 36 H 0.095 0.905 37 H 0.099 0.901 38 H 0.112 0.888 39 H 0.173 0.827 40 H 0.184 0.816 41 H 0.192 0.808 42 H 0.183 0.817 43 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.493 -17.576 -18.543 25.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.030 3.970 3 H 0.066 0.934 4 C 0.066 3.934 5 H 0.091 0.909 6 N -0.383 5.383 7 C -0.453 4.453 8 H 0.094 0.906 9 C -0.297 4.297 10 N -0.628 5.628 11 Si 0.956 3.044 12 H -0.189 1.189 13 H -0.224 1.224 14 H -0.222 1.222 15 C -0.189 4.189 16 C -0.030 4.030 17 N -0.331 5.331 18 C 0.364 3.636 19 O -0.446 6.446 20 C -0.180 4.180 21 C -0.001 4.001 22 N -0.180 5.180 23 C -0.061 4.061 24 C -0.022 4.022 25 N -0.191 5.191 26 C -0.077 4.077 27 C -0.141 4.141 28 C -0.104 4.104 29 C -0.040 4.040 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.091 0.909 33 H 0.189 0.811 34 H 0.054 0.946 35 H 0.072 0.928 36 H 0.113 0.887 37 H 0.117 0.883 38 H 0.130 0.870 39 H 0.190 0.810 40 H 0.201 0.799 41 H 0.208 0.792 42 H 0.201 0.799 43 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 1.010 -17.096 -18.603 25.286 hybrid contribution -0.840 0.848 -0.127 1.200 sum 0.170 -16.248 -18.730 24.796 Atomic orbital electron populations 1.21959 0.93786 1.02783 1.01871 1.21674 0.95177 0.95441 0.84742 0.93377 1.21392 0.95029 0.90925 0.86036 0.90877 1.42559 1.82513 1.08836 1.04394 1.20387 1.41955 0.97064 0.85885 0.90557 1.27151 1.00115 0.94216 1.08221 1.70941 1.54748 1.17484 1.19583 0.82571 0.76131 0.75160 0.70517 1.18938 1.22379 1.22209 1.23409 0.98875 1.01583 0.94984 1.23025 0.95966 0.88433 0.95582 1.48442 1.51545 1.29043 1.04081 1.17946 0.80711 0.83496 0.81477 1.90778 1.39584 1.30714 1.83554 1.20859 1.04854 0.96281 0.95978 1.23173 0.89971 1.00579 0.86369 1.67977 1.11344 1.07777 1.30947 1.20389 0.99130 0.91328 0.95256 1.23335 0.91726 0.89289 0.97821 1.67508 1.16109 1.08552 1.26891 1.22902 0.95555 1.01687 0.87546 1.22388 0.97179 0.92271 1.02273 1.19161 1.00321 0.96751 0.94213 1.22838 0.89466 0.92251 0.99415 0.92351 0.92522 0.90898 0.81087 0.94617 0.92818 0.88671 0.88257 0.87010 0.80973 0.79864 0.79161 0.79924 0.79373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.50 9.09 71.98 0.65 -3.84 16 2 C 0.13 4.36 3.23 45.34 0.15 4.50 16 3 H 0.05 1.86 7.69 -2.39 -0.02 1.84 16 4 C 0.18 6.09 3.11 46.18 0.14 6.23 16 5 H 0.07 2.48 7.84 -2.39 -0.02 2.46 16 6 N -0.74 -34.67 5.25 -317.32 -1.67 -36.34 16 7 C -0.32 -16.72 9.98 84.04 0.84 -15.88 16 8 H 0.08 3.77 7.83 -2.91 -0.02 3.75 16 9 C -0.11 -5.90 5.50 84.86 0.47 -5.43 16 10 N -0.98 -60.12 13.70 21.65 0.30 -59.82 16 11 Si 1.13 49.89 29.92 68.60 2.05 51.94 16 12 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 13 H -0.30 -13.18 7.11 99.48 0.71 -12.47 16 14 H -0.29 -13.01 7.11 99.48 0.71 -12.31 16 15 C -0.15 -4.05 6.77 31.99 0.22 -3.83 16 16 C 0.09 1.73 5.02 86.85 0.44 2.16 16 17 N -0.60 -15.77 3.06 -791.43 -2.43 -18.20 16 18 C 0.57 16.05 7.48 86.79 0.65 16.70 16 19 O -0.57 -19.93 15.56 -3.87 -0.06 -19.99 16 20 C -0.17 -3.82 5.73 -19.97 -0.11 -3.94 16 21 C 0.17 3.99 10.72 85.42 0.92 4.91 16 22 N -0.47 -10.75 10.33 -187.60 -1.94 -12.68 16 23 C 0.06 1.24 6.62 40.36 0.27 1.51 16 24 C 0.15 2.64 11.25 85.38 0.96 3.60 16 25 N -0.48 -8.06 10.28 -195.39 -2.01 -10.06 16 26 C 0.07 0.75 11.08 84.15 0.93 1.68 16 27 C -0.12 -1.23 9.88 22.40 0.22 -1.01 16 28 C -0.10 -1.57 5.75 -21.27 -0.12 -1.70 16 29 C -0.01 -0.22 7.85 22.98 0.18 -0.04 16 30 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.06 1.85 6.79 -2.39 -0.02 1.83 16 32 H 0.07 1.92 8.14 -2.38 -0.02 1.90 16 33 H 0.36 18.20 6.34 -92.70 -0.59 17.61 16 34 H 0.24 14.98 6.77 -92.70 -0.63 14.35 16 35 H 0.05 1.73 8.14 -2.38 -0.02 1.71 16 36 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 37 H 0.10 1.48 6.12 -2.39 -0.01 1.46 16 38 H 0.11 1.33 7.32 -2.39 -0.02 1.32 16 39 H 0.17 3.84 7.85 -2.91 -0.02 3.82 16 40 H 0.18 2.57 8.06 -2.91 -0.02 2.55 16 41 H 0.19 0.91 8.06 -2.92 -0.02 0.89 16 42 H 0.18 0.44 8.06 -2.91 -0.02 0.42 16 43 H 0.19 1.84 4.57 -2.91 -0.01 1.82 16 Total: -1.00 -73.55 354.32 1.66 -71.89 By element: Atomic # 1 Polarization: 27.02 SS G_CDS: 0.61 Total: 27.63 kcal Atomic # 6 Polarization: -1.16 SS G_CDS: 6.79 Total: 5.64 kcal Atomic # 7 Polarization: -129.36 SS G_CDS: -7.74 Total: -137.10 kcal Atomic # 8 Polarization: -19.93 SS G_CDS: -0.06 Total: -19.99 kcal Atomic # 14 Polarization: 49.89 SS G_CDS: 2.05 Total: 51.94 kcal Total: -73.55 1.66 -71.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986576127.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.968 kcal (2) G-P(sol) polarization free energy of solvation -73.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.888 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds