Wall clock time and date at job start Tue Mar 31 2020 14:43:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08993 * 109.99757 * 2 1 4 4 C 1.54322 * 109.76945 * 121.15110 * 2 1 3 5 5 H 1.08995 * 110.92396 * 23.46908 * 4 2 1 6 6 N 1.46508 * 110.74183 * 260.21118 * 4 2 1 7 7 C 1.36934 * 119.99665 * 160.10781 * 6 4 2 8 8 H 1.07996 * 120.00047 * 0.02562 * 7 6 4 9 9 C 1.38810 * 119.99363 * 180.02562 * 7 6 4 10 10 N 1.31616 * 120.00594 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 119.99629 * 180.02562 * 9 7 6 12 12 H 1.48507 * 109.47072 * 89.99962 * 11 9 7 13 13 H 1.48506 * 109.47327 * 209.99841 * 11 9 7 14 14 H 1.48498 * 109.47272 * 330.00027 * 11 9 7 15 15 C 1.55154 * 102.86122 * 141.88784 * 4 2 1 16 16 C 1.54915 * 101.58079 * 324.29805 * 15 4 2 17 17 N 1.47020 * 109.88296 * 238.89651 * 2 1 3 18 18 C 1.34775 * 125.64595 * 61.67981 * 17 2 1 19 19 O 1.21525 * 119.99942 * 355.77058 * 18 17 2 20 20 C 1.48005 * 119.99752 * 176.04724 * 18 17 2 21 21 C 1.38887 * 121.17029 * 35.94625 * 20 18 17 22 22 C 1.39353 * 119.66909 * 179.97438 * 21 20 18 23 23 N 1.31099 * 121.90397 * 359.97438 * 22 21 20 24 24 C 1.33286 * 121.61739 * 0.02562 * 23 22 21 25 25 C 1.40835 * 121.90661 * 179.97438 * 24 23 22 26 26 C 1.36166 * 118.76605 * 180.02562 * 25 24 23 27 27 N 1.32534 * 121.95668 * 359.97438 * 26 25 24 28 28 C 1.31339 * 122.60912 * 0.02562 * 27 26 25 29 29 C 1.40081 * 119.87202 * 359.73252 * 28 27 26 30 30 H 1.08997 * 109.47652 * 179.64763 * 1 2 3 31 31 H 1.09005 * 109.46817 * 299.65111 * 1 2 3 32 32 H 1.09000 * 109.47090 * 59.64433 * 1 2 3 33 33 H 0.97000 * 119.99477 * 340.11587 * 6 4 2 34 34 H 0.97001 * 120.00366 * 179.97438 * 10 9 7 35 35 H 1.09000 * 111.00215 * 206.22874 * 15 4 2 36 36 H 1.08992 * 111.01123 * 82.37415 * 15 4 2 37 37 H 1.08998 * 110.36833 * 278.17341 * 16 15 4 38 38 H 1.08996 * 110.36487 * 155.85163 * 16 15 4 39 39 H 1.07994 * 120.16648 * 359.97438 * 21 20 18 40 40 H 1.07997 * 119.04860 * 180.02562 * 22 21 20 41 41 H 1.07998 * 120.61914 * 359.97438 * 25 24 23 42 42 H 1.08004 * 119.01983 * 179.97438 * 26 25 24 43 43 H 1.08001 * 120.05995 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0520 -0.7513 1.2429 5 1 1.3049 -1.4511 1.6169 6 7 2.4467 0.1924 2.2917 7 6 2.5465 -0.2300 3.5905 8 1 2.3347 -1.2588 3.8415 9 6 2.9200 0.6642 4.5843 10 7 3.1786 1.9179 4.2783 11 14 3.0568 0.0879 6.3559 12 1 4.4380 -0.3926 6.6148 13 1 2.7461 1.2169 7.2692 14 1 2.0953 -1.0189 6.5921 15 6 3.2888 -1.5101 0.6936 16 6 2.8190 -1.8764 -0.7365 17 7 2.0300 -0.7142 -1.1838 18 6 1.8086 -0.3615 -2.4656 19 8 1.0815 0.5784 -2.7202 20 6 2.4460 -1.1227 -3.5632 21 6 2.6270 -2.4969 -3.4744 22 6 3.2304 -3.1826 -4.5269 23 7 3.6376 -2.5682 -5.6111 24 6 3.4956 -1.2517 -5.7633 25 6 3.9312 -0.5855 -6.9252 26 6 3.7547 0.7618 -7.0131 27 7 3.1865 1.4598 -6.0402 28 6 2.7567 0.9059 -4.9296 29 6 2.8871 -0.4764 -4.7434 30 1 -0.3634 -1.0276 -0.0063 31 1 -0.3633 0.5084 0.8932 32 1 -0.3633 0.5193 -0.8868 33 1 2.6372 1.1164 2.0661 34 1 3.4393 2.5429 4.9729 35 1 3.4896 -2.4064 1.2804 36 1 4.1638 -0.8610 0.6630 37 1 2.1971 -2.7712 -0.7139 38 1 3.6776 -2.0267 -1.3909 39 1 2.3017 -3.0314 -2.5942 40 1 3.3658 -4.2511 -4.4474 41 1 4.3974 -1.1329 -7.7310 42 1 4.0877 1.2769 -7.9020 43 1 2.2992 1.5143 -4.1634 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986616700.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:43:55 Heat of formation + Delta-G solvation = 58.760693 kcal Electronic energy + Delta-G solvation = -27216.716274 eV Core-core repulsion = 23455.608266 eV Total energy + Delta-G solvation = -3761.108009 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.68541 -40.06089 -38.28054 -37.66499 -34.42886 -33.84913 -31.86654 -31.84200 -31.09481 -30.58538 -29.20145 -25.83084 -25.39704 -24.47420 -23.96921 -23.11352 -22.28994 -20.40198 -19.63183 -18.88498 -17.88429 -17.35512 -17.24959 -16.58065 -16.14294 -15.45608 -15.13165 -14.92750 -14.78981 -14.58431 -14.47497 -13.92207 -13.73010 -13.56806 -13.41180 -13.10494 -13.00381 -12.74942 -12.34267 -12.31601 -12.01840 -11.71157 -11.30548 -11.12953 -10.96807 -10.88872 -10.71807 -10.49564 -10.34980 -10.11226 -9.95874 -9.81478 -9.66749 -9.55509 -9.02784 -8.81987 -8.65549 -7.11950 -5.88583 -3.19837 -0.31206 0.34455 1.28556 2.48957 2.67711 2.87049 3.36272 3.41718 3.43750 3.75545 3.77076 4.01157 4.12649 4.24043 4.36154 4.38156 4.47856 4.76146 4.86340 4.95413 4.96891 5.15473 5.20865 5.25557 5.31407 5.39924 5.45113 5.54639 5.56774 5.60237 5.63947 5.78412 5.94363 6.00744 6.01651 6.16728 6.30024 6.31620 6.44899 6.49619 6.54690 6.79751 7.36643 7.42238 7.58668 7.65758 7.94693 8.28191 9.40038 9.93055 10.27555 11.33362 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.022047 B = 0.002798 C = 0.002695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.734661 B =10003.822200 C =10388.629576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.127 3.873 3 H 0.082 0.918 4 C 0.177 3.823 5 H 0.067 0.933 6 N -0.714 5.714 7 C -0.246 4.246 8 H 0.073 0.927 9 C -0.008 4.008 10 N -0.928 5.928 11 Si 0.908 3.092 12 H -0.289 1.289 13 H -0.291 1.291 14 H -0.281 1.281 15 C -0.157 4.157 16 C 0.089 3.911 17 N -0.594 5.594 18 C 0.567 3.433 19 O -0.525 6.525 20 C -0.031 4.031 21 C -0.153 4.153 22 C 0.152 3.848 23 N -0.467 5.467 24 C 0.155 3.845 25 C -0.149 4.149 26 C 0.094 3.906 27 N -0.486 5.486 28 C 0.172 3.828 29 C -0.135 4.135 30 H 0.051 0.949 31 H 0.073 0.927 32 H 0.064 0.936 33 H 0.386 0.614 34 H 0.257 0.743 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.072 0.928 38 H 0.073 0.927 39 H 0.154 0.846 40 H 0.171 0.829 41 H 0.147 0.853 42 H 0.161 0.839 43 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.117 -10.465 -19.309 21.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.024 3.976 3 H 0.100 0.900 4 C 0.065 3.935 5 H 0.085 0.915 6 N -0.355 5.355 7 C -0.377 4.377 8 H 0.090 0.910 9 C -0.205 4.205 10 N -0.576 5.576 11 Si 0.739 3.261 12 H -0.216 1.216 13 H -0.217 1.217 14 H -0.207 1.207 15 C -0.198 4.198 16 C -0.034 4.034 17 N -0.326 5.326 18 C 0.355 3.645 19 O -0.402 6.402 20 C -0.045 4.045 21 C -0.174 4.174 22 C -0.022 4.022 23 N -0.176 5.176 24 C 0.029 3.971 25 C -0.169 4.169 26 C -0.050 4.050 27 N -0.194 5.194 28 C 0.000 4.000 29 C -0.139 4.139 30 H 0.070 0.930 31 H 0.091 0.909 32 H 0.083 0.917 33 H 0.221 0.779 34 H 0.067 0.933 35 H 0.098 0.902 36 H 0.096 0.904 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.172 0.828 40 H 0.188 0.812 41 H 0.165 0.835 42 H 0.178 0.822 43 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 0.087 -9.467 -20.312 22.410 hybrid contribution 0.017 -0.635 1.707 1.821 sum 0.104 -10.102 -18.606 21.172 Atomic orbital electron populations 1.22072 0.94406 1.01833 1.03079 1.22029 0.94781 0.96972 0.83834 0.89956 1.21251 0.93522 0.91691 0.87003 0.91498 1.42341 1.81110 1.08968 1.03043 1.19174 1.39773 0.95061 0.83720 0.90950 1.24772 1.01915 0.95601 0.98211 1.69658 1.52349 1.02949 1.32611 0.86184 0.77764 0.77432 0.84712 1.21628 1.21701 1.20660 1.23624 1.01609 1.02037 0.92562 1.22707 0.94685 0.88210 0.97767 1.48481 1.50887 1.28652 1.04601 1.17649 0.81650 0.83900 0.81328 1.90769 1.37490 1.29072 1.82900 1.20372 0.96102 0.94373 0.93637 1.22770 0.99404 0.93860 1.01365 1.23147 0.90773 1.00819 0.87457 1.67861 1.17212 1.08799 1.23713 1.18876 0.94960 0.89601 0.93646 1.21713 1.02317 0.95512 0.97400 1.22398 0.94277 0.91049 0.97323 1.67672 1.09881 1.40594 1.01273 1.23740 0.90972 0.90810 0.94498 1.19597 1.02282 0.96981 0.95085 0.92967 0.90853 0.91689 0.77933 0.93281 0.90222 0.90449 0.91013 0.90871 0.82823 0.81158 0.83479 0.82167 0.80180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.38 9.10 37.16 0.34 -2.04 16 2 C 0.13 2.04 3.23 -66.95 -0.22 1.83 16 3 H 0.08 1.50 7.69 -51.93 -0.40 1.10 16 4 C 0.18 3.11 3.11 -66.09 -0.21 2.90 16 5 H 0.07 1.17 7.84 -51.93 -0.41 0.76 16 6 N -0.71 -16.42 5.25 -51.65 -0.27 -16.69 16 7 C -0.25 -6.34 9.98 -15.06 -0.15 -6.49 16 8 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 9 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 10 N -0.93 -26.88 13.06 55.49 0.72 -26.15 16 11 Si 0.91 21.34 29.55 -169.99 -5.02 16.31 16 12 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 13 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 14 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 15 C -0.16 -2.31 6.76 -24.58 -0.17 -2.47 16 16 C 0.09 1.01 5.16 -2.53 -0.01 0.99 16 17 N -0.59 -8.21 3.07 -164.06 -0.50 -8.71 16 18 C 0.57 8.15 7.13 -12.26 -0.09 8.06 16 19 O -0.52 -8.88 13.60 5.34 0.07 -8.80 16 20 C -0.03 -0.38 5.56 -104.37 -0.58 -0.96 16 21 C -0.15 -1.39 8.03 -38.93 -0.31 -1.71 16 22 C 0.15 1.27 11.14 -17.45 -0.19 1.08 16 23 N -0.47 -5.13 10.33 -10.95 -0.11 -5.24 16 24 C 0.16 1.87 6.63 -84.88 -0.56 1.30 16 25 C -0.15 -1.51 10.08 -39.34 -0.40 -1.90 16 26 C 0.09 0.96 11.06 -17.99 -0.20 0.76 16 27 N -0.49 -6.36 10.31 -13.24 -0.14 -6.49 16 28 C 0.17 2.35 10.45 -17.07 -0.18 2.17 16 29 C -0.13 -1.75 5.76 -106.55 -0.61 -2.36 16 30 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 32 H 0.06 1.03 6.75 -51.93 -0.35 0.68 16 33 H 0.39 9.66 7.51 -40.82 -0.31 9.35 16 34 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 35 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 37 H 0.07 0.64 7.28 -51.93 -0.38 0.26 16 38 H 0.07 0.72 6.64 -51.93 -0.34 0.37 16 39 H 0.15 1.05 5.57 -52.49 -0.29 0.75 16 40 H 0.17 0.77 8.06 -52.49 -0.42 0.35 16 41 H 0.15 1.12 8.06 -52.49 -0.42 0.70 16 42 H 0.16 1.09 8.06 -52.48 -0.42 0.67 16 43 H 0.18 2.60 5.93 -52.49 -0.31 2.29 16 LS Contribution 353.26 15.07 5.32 5.32 Total: -1.00 -31.52 353.26 -8.86 -40.37 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: -5.30 Total: 9.24 kcal Atomic # 6 Polarization: 4.47 SS G_CDS: -3.63 Total: 0.83 kcal Atomic # 7 Polarization: -62.99 SS G_CDS: -0.30 Total: -63.28 kcal Atomic # 8 Polarization: -8.88 SS G_CDS: 0.07 Total: -8.80 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.52 -8.86 -40.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986616700.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.134 kcal (2) G-P(sol) polarization free energy of solvation -31.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.373 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds