Wall clock time and date at job start Tue Mar 31 2020 14:43:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08993 * 109.99757 * 2 1 4 4 C 1.54322 * 109.76945 * 121.15110 * 2 1 3 5 5 H 1.08995 * 110.92396 * 23.46908 * 4 2 1 6 6 N 1.46508 * 110.74183 * 260.21118 * 4 2 1 7 7 C 1.36934 * 119.99665 * 160.10781 * 6 4 2 8 8 H 1.07996 * 120.00047 * 0.02562 * 7 6 4 9 9 C 1.38810 * 119.99363 * 180.02562 * 7 6 4 10 10 N 1.31616 * 120.00594 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 119.99629 * 180.02562 * 9 7 6 12 12 H 1.48507 * 109.47072 * 89.99962 * 11 9 7 13 13 H 1.48506 * 109.47327 * 209.99841 * 11 9 7 14 14 H 1.48498 * 109.47272 * 330.00027 * 11 9 7 15 15 C 1.55154 * 102.86122 * 141.88784 * 4 2 1 16 16 C 1.54915 * 101.58079 * 324.29805 * 15 4 2 17 17 N 1.47020 * 109.88296 * 238.89651 * 2 1 3 18 18 C 1.34775 * 125.64595 * 61.67981 * 17 2 1 19 19 O 1.21525 * 119.99942 * 355.77058 * 18 17 2 20 20 C 1.48005 * 119.99752 * 176.04724 * 18 17 2 21 21 C 1.38887 * 121.17029 * 35.94625 * 20 18 17 22 22 C 1.39353 * 119.66909 * 179.97438 * 21 20 18 23 23 N 1.31099 * 121.90397 * 359.97438 * 22 21 20 24 24 C 1.33286 * 121.61739 * 0.02562 * 23 22 21 25 25 C 1.40835 * 121.90661 * 179.97438 * 24 23 22 26 26 C 1.36166 * 118.76605 * 180.02562 * 25 24 23 27 27 N 1.32534 * 121.95668 * 359.97438 * 26 25 24 28 28 C 1.31339 * 122.60912 * 0.02562 * 27 26 25 29 29 C 1.40081 * 119.87202 * 359.73252 * 28 27 26 30 30 H 1.08997 * 109.47652 * 179.64763 * 1 2 3 31 31 H 1.09005 * 109.46817 * 299.65111 * 1 2 3 32 32 H 1.09000 * 109.47090 * 59.64433 * 1 2 3 33 33 H 0.97000 * 119.99477 * 340.11587 * 6 4 2 34 34 H 0.97001 * 120.00366 * 179.97438 * 10 9 7 35 35 H 1.09000 * 111.00215 * 206.22874 * 15 4 2 36 36 H 1.08992 * 111.01123 * 82.37415 * 15 4 2 37 37 H 1.08998 * 110.36833 * 278.17341 * 16 15 4 38 38 H 1.08996 * 110.36487 * 155.85163 * 16 15 4 39 39 H 1.07994 * 120.16648 * 359.97438 * 21 20 18 40 40 H 1.07997 * 119.04860 * 180.02562 * 22 21 20 41 41 H 1.07998 * 120.61914 * 359.97438 * 25 24 23 42 42 H 1.08004 * 119.01983 * 179.97438 * 26 25 24 43 43 H 1.08001 * 120.05995 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0520 -0.7513 1.2429 5 1 1.3049 -1.4511 1.6169 6 7 2.4467 0.1924 2.2917 7 6 2.5465 -0.2300 3.5905 8 1 2.3347 -1.2588 3.8415 9 6 2.9200 0.6642 4.5843 10 7 3.1786 1.9179 4.2783 11 14 3.0568 0.0879 6.3559 12 1 4.4380 -0.3926 6.6148 13 1 2.7461 1.2169 7.2692 14 1 2.0953 -1.0189 6.5921 15 6 3.2888 -1.5101 0.6936 16 6 2.8190 -1.8764 -0.7365 17 7 2.0300 -0.7142 -1.1838 18 6 1.8086 -0.3615 -2.4656 19 8 1.0815 0.5784 -2.7202 20 6 2.4460 -1.1227 -3.5632 21 6 2.6270 -2.4969 -3.4744 22 6 3.2304 -3.1826 -4.5269 23 7 3.6376 -2.5682 -5.6111 24 6 3.4956 -1.2517 -5.7633 25 6 3.9312 -0.5855 -6.9252 26 6 3.7547 0.7618 -7.0131 27 7 3.1865 1.4598 -6.0402 28 6 2.7567 0.9059 -4.9296 29 6 2.8871 -0.4764 -4.7434 30 1 -0.3634 -1.0276 -0.0063 31 1 -0.3633 0.5084 0.8932 32 1 -0.3633 0.5193 -0.8868 33 1 2.6372 1.1164 2.0661 34 1 3.4393 2.5429 4.9729 35 1 3.4896 -2.4064 1.2804 36 1 4.1638 -0.8610 0.6630 37 1 2.1971 -2.7712 -0.7139 38 1 3.6776 -2.0267 -1.3909 39 1 2.3017 -3.0314 -2.5942 40 1 3.3658 -4.2511 -4.4474 41 1 4.3974 -1.1329 -7.7310 42 1 4.0877 1.2769 -7.9020 43 1 2.2992 1.5143 -4.1634 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986616700.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:43:55 Heat of formation + Delta-G solvation = 37.354542 kcal Electronic energy + Delta-G solvation = -27217.644515 eV Core-core repulsion = 23455.608266 eV Total energy + Delta-G solvation = -3762.036249 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.55584 -41.16560 -39.11683 -38.90325 -36.00381 -34.87966 -33.36324 -32.68165 -32.33453 -31.59527 -30.65090 -27.00931 -26.59965 -25.40342 -25.07533 -24.55676 -23.36533 -21.70467 -20.71381 -19.77429 -19.20328 -18.73510 -18.14983 -17.78458 -17.17661 -16.64468 -16.34620 -15.96113 -15.76689 -15.62127 -15.50519 -15.30752 -15.04230 -14.75551 -14.59524 -14.29647 -13.99516 -13.90359 -13.60258 -13.31172 -13.13099 -13.06583 -12.90657 -12.66431 -12.53488 -12.15069 -12.12014 -11.86772 -11.71266 -11.54472 -11.42823 -10.94495 -10.86802 -10.48172 -10.46351 -9.82753 -9.61648 -9.02092 -7.93163 -5.23141 -1.14905 -0.43934 0.40018 1.47089 1.50990 1.51634 1.59877 1.68837 1.95341 2.57985 2.91779 3.02218 3.11415 3.30095 3.39383 3.42734 3.56002 3.59679 3.67560 3.73347 3.96571 4.12352 4.16255 4.22768 4.28934 4.35218 4.38813 4.49991 4.54511 4.61921 4.65800 4.67557 4.77604 4.82689 4.91024 5.02912 5.21463 5.23455 5.23824 5.29744 5.44840 5.51419 5.56479 6.26671 6.33661 6.60926 6.77818 6.86028 7.33692 8.05766 8.28599 9.30365 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.022047 B = 0.002798 C = 0.002695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.734661 B =10003.822200 C =10388.629576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.134 3.866 3 H 0.048 0.952 4 C 0.172 3.828 5 H 0.077 0.923 6 N -0.730 5.730 7 C -0.233 4.233 8 H 0.086 0.914 9 C -0.076 4.076 10 N -0.972 5.972 11 Si 0.972 3.028 12 H -0.288 1.288 13 H -0.303 1.303 14 H -0.265 1.265 15 C -0.149 4.149 16 C 0.095 3.905 17 N -0.594 5.594 18 C 0.567 3.433 19 O -0.561 6.561 20 C -0.057 4.057 21 C -0.127 4.127 22 C 0.161 3.839 23 N -0.477 5.477 24 C 0.138 3.862 25 C -0.139 4.139 26 C 0.084 3.916 27 N -0.507 5.507 28 C 0.145 3.855 29 C -0.148 4.148 30 H 0.073 0.927 31 H 0.059 0.941 32 H 0.054 0.946 33 H 0.370 0.630 34 H 0.249 0.751 35 H 0.096 0.904 36 H 0.052 0.948 37 H 0.114 0.886 38 H 0.096 0.904 39 H 0.185 0.815 40 H 0.220 0.780 41 H 0.175 0.825 42 H 0.193 0.807 43 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.582 -14.930 -20.607 25.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.030 3.970 3 H 0.066 0.934 4 C 0.062 3.938 5 H 0.095 0.905 6 N -0.370 5.370 7 C -0.365 4.365 8 H 0.104 0.896 9 C -0.269 4.269 10 N -0.623 5.623 11 Si 0.801 3.199 12 H -0.215 1.215 13 H -0.230 1.230 14 H -0.189 1.189 15 C -0.190 4.190 16 C -0.027 4.027 17 N -0.325 5.325 18 C 0.356 3.644 19 O -0.441 6.441 20 C -0.070 4.070 21 C -0.148 4.148 22 C -0.013 4.013 23 N -0.185 5.185 24 C 0.012 3.988 25 C -0.159 4.159 26 C -0.061 4.061 27 N -0.215 5.215 28 C -0.026 4.026 29 C -0.153 4.153 30 H 0.092 0.908 31 H 0.078 0.922 32 H 0.073 0.927 33 H 0.202 0.798 34 H 0.058 0.942 35 H 0.115 0.885 36 H 0.070 0.930 37 H 0.132 0.868 38 H 0.114 0.886 39 H 0.203 0.797 40 H 0.236 0.764 41 H 0.193 0.807 42 H 0.210 0.790 43 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 0.545 -14.000 -21.643 25.782 hybrid contribution -0.130 0.652 1.986 2.094 sum 0.415 -13.348 -19.657 23.765 Atomic orbital electron populations 1.21963 0.93757 1.02817 1.01856 1.21706 0.95195 0.95478 0.84667 0.93382 1.21464 0.95087 0.91113 0.86148 0.90494 1.42539 1.81508 1.09227 1.03683 1.19614 1.36873 0.95304 0.84705 0.89582 1.25566 1.03325 0.95843 1.02126 1.69829 1.54981 1.04224 1.33227 0.85166 0.77835 0.76828 0.80070 1.21539 1.22984 1.18935 1.23428 0.98930 1.01607 0.95053 1.22925 0.95930 0.88286 0.95528 1.48456 1.51050 1.29204 1.03830 1.18027 0.81108 0.83523 0.81734 1.90751 1.39164 1.30744 1.83462 1.20192 0.98268 0.95713 0.92876 1.23169 0.97004 0.92219 1.02367 1.23964 0.88627 1.02699 0.85981 1.67959 1.17676 1.07989 1.24911 1.19150 0.95391 0.90287 0.93946 1.22062 1.00961 0.95462 0.97400 1.22915 0.93968 0.91627 0.97566 1.67608 1.10380 1.41784 1.01745 1.23456 0.92766 0.91540 0.94818 1.19656 1.03026 0.96629 0.96008 0.90756 0.92234 0.92733 0.79791 0.94197 0.88532 0.92958 0.86797 0.88572 0.79750 0.76392 0.80721 0.78978 0.82442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.49 9.10 71.98 0.65 -3.83 16 2 C 0.13 4.36 3.23 45.34 0.15 4.51 16 3 H 0.05 1.89 7.69 -2.39 -0.02 1.88 16 4 C 0.17 5.87 3.11 46.18 0.14 6.01 16 5 H 0.08 2.51 7.84 -2.39 -0.02 2.49 16 6 N -0.73 -34.18 5.25 -317.33 -1.67 -35.85 16 7 C -0.23 -11.96 9.98 84.03 0.84 -11.13 16 8 H 0.09 4.10 7.83 -2.91 -0.02 4.08 16 9 C -0.08 -4.20 5.50 84.86 0.47 -3.74 16 10 N -0.97 -58.33 13.06 21.65 0.28 -58.04 16 11 Si 0.97 44.22 29.55 68.60 2.03 46.25 16 12 H -0.29 -12.92 7.11 99.48 0.71 -12.22 16 13 H -0.30 -14.23 7.11 99.48 0.71 -13.53 16 14 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 15 C -0.15 -4.07 6.76 31.99 0.22 -3.85 16 16 C 0.09 1.78 5.16 86.86 0.45 2.23 16 17 N -0.59 -15.72 3.07 -791.27 -2.43 -18.15 16 18 C 0.57 16.23 7.13 86.83 0.62 16.84 16 19 O -0.56 -20.06 13.60 -3.80 -0.05 -20.11 16 20 C -0.06 -1.32 5.56 -19.70 -0.11 -1.43 16 21 C -0.13 -1.76 8.03 22.69 0.18 -1.58 16 22 C 0.16 1.90 11.14 85.07 0.95 2.85 16 23 N -0.48 -8.75 10.33 -188.56 -1.95 -10.70 16 24 C 0.14 3.05 6.63 40.45 0.27 3.32 16 25 C -0.14 -2.54 10.08 22.42 0.23 -2.32 16 26 C 0.08 1.64 11.06 84.10 0.93 2.57 16 27 N -0.51 -13.71 10.31 -195.81 -2.02 -15.73 16 28 C 0.15 4.23 10.45 85.21 0.89 5.12 16 29 C -0.15 -3.82 5.76 -21.11 -0.12 -3.94 16 30 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.06 1.96 8.14 -2.38 -0.02 1.94 16 32 H 0.05 1.79 6.75 -2.39 -0.02 1.77 16 33 H 0.37 19.47 7.51 -92.71 -0.70 18.77 16 34 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 35 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 36 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 37 H 0.11 1.29 7.28 -2.39 -0.02 1.28 16 38 H 0.10 1.45 6.64 -2.39 -0.02 1.43 16 39 H 0.19 1.33 5.57 -2.91 -0.02 1.32 16 40 H 0.22 0.43 8.06 -2.91 -0.02 0.41 16 41 H 0.18 2.11 8.06 -2.91 -0.02 2.09 16 42 H 0.19 2.27 8.06 -2.91 -0.02 2.25 16 43 H 0.16 5.13 5.93 -2.91 -0.02 5.11 16 Total: -1.00 -73.61 353.26 1.31 -72.30 By element: Atomic # 1 Polarization: 28.02 SS G_CDS: 0.36 Total: 28.39 kcal Atomic # 6 Polarization: 4.89 SS G_CDS: 6.75 Total: 11.64 kcal Atomic # 7 Polarization: -130.69 SS G_CDS: -7.78 Total: -138.47 kcal Atomic # 8 Polarization: -20.06 SS G_CDS: -0.05 Total: -20.11 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Total: -73.61 1.31 -72.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986616700.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.653 kcal (2) G-P(sol) polarization free energy of solvation -73.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.298 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds