Wall clock time and date at job start Tue Mar 31 2020 14:42:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09006 * 109.99648 * 2 1 4 4 C 1.54327 * 109.77983 * 121.16883 * 2 1 3 5 5 H 1.09007 * 110.66743 * 215.87524 * 4 2 1 6 6 N 1.46493 * 110.85375 * 339.03032 * 4 2 1 7 7 C 1.36937 * 120.00154 * 200.14503 * 6 4 2 8 8 H 1.07994 * 120.00206 * 0.02562 * 7 6 4 9 9 C 1.38822 * 119.99737 * 179.97438 * 7 6 4 10 10 N 1.31613 * 120.00246 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 119.99566 * 180.02562 * 9 7 6 12 12 H 1.48496 * 109.47121 * 90.00206 * 11 9 7 13 13 H 1.48503 * 109.46604 * 210.00030 * 11 9 7 14 14 H 1.48501 * 109.46941 * 329.99817 * 11 9 7 15 15 C 1.55165 * 103.01991 * 97.49947 * 4 2 1 16 16 C 1.54911 * 101.57897 * 35.30597 * 15 4 2 17 17 N 1.47027 * 109.88491 * 238.91170 * 2 1 3 18 18 C 1.34779 * 125.64335 * 59.55260 * 17 2 1 19 19 O 1.21541 * 120.00325 * 359.72057 * 18 17 2 20 20 C 1.47927 * 119.99356 * 179.71876 * 18 17 2 21 21 C 1.38938 * 119.84162 * 180.02562 * 20 18 17 22 22 C 1.40655 * 117.38214 * 180.02562 * 21 20 18 23 23 C 1.40263 * 122.02689 * 179.97438 * 22 21 20 24 24 C 1.36263 * 119.47007 * 180.02562 * 23 22 21 25 25 C 1.39323 * 120.87436 * 359.97438 * 24 23 22 26 26 C 1.36225 * 121.15812 * 359.97438 * 25 24 23 27 27 C 1.40334 * 119.68668 * 0.04019 * 26 25 24 28 28 N 1.33810 * 121.63296 * 179.97438 * 27 26 25 29 29 N 1.28444 * 121.68630 * 180.02562 * 28 27 26 30 30 H 1.09002 * 109.46870 * 179.63416 * 1 2 3 31 31 H 1.08996 * 109.46939 * 299.63291 * 1 2 3 32 32 H 1.08999 * 109.46985 * 59.63786 * 1 2 3 33 33 H 0.97002 * 120.00101 * 20.14513 * 6 4 2 34 34 H 0.96996 * 120.00522 * 179.97438 * 10 9 7 35 35 H 1.08993 * 111.00039 * 277.22878 * 15 4 2 36 36 H 1.09004 * 111.00410 * 153.38094 * 15 4 2 37 37 H 1.09000 * 110.36565 * 204.15185 * 16 15 4 38 38 H 1.09004 * 110.36727 * 81.83294 * 16 15 4 39 39 H 1.07999 * 121.31358 * 0.02562 * 21 20 18 40 40 H 1.08004 * 120.26340 * 0.04997 * 23 22 21 41 41 H 1.08003 * 119.55945 * 179.97438 * 24 23 22 42 42 H 1.08005 * 119.42164 * 180.02562 * 25 24 23 43 43 H 1.08002 * 120.15957 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0523 -0.7516 1.2426 5 1 2.9602 -0.2828 1.6224 6 7 1.0259 -0.8103 2.2862 7 6 1.3840 -1.0490 3.5861 8 1 2.4231 -1.1937 3.8421 9 6 0.4113 -1.1041 4.5751 10 7 -0.8550 -0.9273 4.2632 11 14 0.9000 -1.4291 6.3485 12 1 1.1689 -0.1386 7.0323 13 1 -0.2044 -2.1373 7.0443 14 1 2.1237 -2.2698 6.3786 15 6 2.3563 -2.1698 0.6912 16 6 2.8614 -1.8464 -0.7371 17 7 2.0301 -0.7139 -1.1840 18 6 1.7753 -0.3841 -2.4658 19 8 1.0730 0.5751 -2.7184 20 6 2.3505 -1.1898 -3.5650 21 6 2.0862 -0.8467 -4.8851 22 6 2.6589 -1.6484 -5.8890 23 6 2.4558 -1.3909 -7.2527 24 6 3.0355 -2.2020 -8.1817 25 6 3.8264 -3.2816 -7.7943 26 6 4.0448 -3.5591 -6.4786 27 6 3.4649 -2.7474 -5.4915 28 7 3.6532 -2.9846 -4.1882 29 7 3.1226 -2.2426 -3.2839 30 1 -0.3633 -1.0277 -0.0066 31 1 -0.3633 0.5081 0.8932 32 1 -0.3633 0.5194 -0.8867 33 1 0.0925 -0.6800 2.0564 34 1 -1.5347 -0.9662 4.9541 35 1 1.4523 -2.7778 0.6576 36 1 3.1329 -2.6593 1.2788 37 1 2.7179 -2.7046 -1.3936 38 1 3.9125 -1.5587 -0.7117 39 1 1.4655 0.0022 -5.1310 40 1 1.8452 -0.5562 -7.5640 41 1 2.8797 -2.0053 -9.2322 42 1 4.2749 -3.9090 -8.5504 43 1 4.6610 -4.3999 -6.1964 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986635298.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:22 Heat of formation + Delta-G solvation = 79.922294 kcal Electronic energy + Delta-G solvation = -26887.959112 eV Core-core repulsion = 23127.768739 eV Total energy + Delta-G solvation = -3760.190373 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.71425 -39.94239 -38.17075 -37.47648 -34.20067 -34.04142 -32.34050 -31.43500 -30.82811 -30.59536 -28.83119 -25.73033 -25.38362 -25.06634 -23.43793 -22.89624 -22.52859 -20.55079 -19.11710 -18.96641 -18.12393 -17.42348 -16.96691 -16.35621 -15.91746 -15.54633 -15.16169 -15.12428 -14.73829 -14.49243 -14.18189 -13.89281 -13.68003 -13.38181 -12.98770 -12.84810 -12.69711 -12.52930 -12.38141 -12.04696 -11.79233 -11.60938 -11.29071 -11.09626 -11.08991 -10.95135 -10.76151 -10.40601 -10.19612 -10.04381 -9.88988 -9.82816 -9.78293 -9.60058 -8.90110 -8.86328 -8.37167 -6.98394 -5.78586 -3.07955 -0.45765 0.02523 1.28225 2.07897 2.91725 2.99761 3.43783 3.49039 3.50658 3.57698 3.60046 3.87555 4.09376 4.11814 4.30084 4.55624 4.57904 4.59358 4.67047 5.05824 5.17154 5.20778 5.22217 5.33748 5.39181 5.51103 5.64147 5.67998 5.71548 5.75587 5.81078 5.81764 5.95071 6.14023 6.17004 6.24820 6.30773 6.43564 6.58772 6.68075 6.74184 6.84279 7.03928 7.67848 7.70053 8.07837 8.28347 8.40094 9.51655 10.06958 10.42101 11.44034 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.031801 B = 0.002484 C = 0.002355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.260245 B =11270.677431 C =11889.249250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.127 3.873 3 H 0.075 0.925 4 C 0.173 3.827 5 H 0.064 0.936 6 N -0.718 5.718 7 C -0.242 4.242 8 H 0.072 0.928 9 C -0.012 4.012 10 N -0.932 5.932 11 Si 0.908 3.092 12 H -0.290 1.290 13 H -0.292 1.292 14 H -0.281 1.281 15 C -0.155 4.155 16 C 0.097 3.903 17 N -0.584 5.584 18 C 0.584 3.416 19 O -0.537 6.537 20 C 0.003 3.997 21 C -0.030 4.030 22 C -0.074 4.074 23 C -0.094 4.094 24 C -0.099 4.099 25 C -0.094 4.094 26 C -0.079 4.079 27 C 0.070 3.930 28 N -0.204 5.204 29 N -0.183 5.183 30 H 0.057 0.943 31 H 0.081 0.919 32 H 0.060 0.940 33 H 0.391 0.609 34 H 0.256 0.744 35 H 0.073 0.927 36 H 0.076 0.924 37 H 0.097 0.903 38 H 0.066 0.934 39 H 0.167 0.833 40 H 0.141 0.859 41 H 0.136 0.864 42 H 0.138 0.862 43 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.264 -3.314 -26.970 28.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.024 3.976 3 H 0.093 0.907 4 C 0.061 3.939 5 H 0.081 0.919 6 N -0.361 5.361 7 C -0.373 4.373 8 H 0.090 0.910 9 C -0.208 4.208 10 N -0.580 5.580 11 Si 0.739 3.261 12 H -0.217 1.217 13 H -0.218 1.218 14 H -0.207 1.207 15 C -0.196 4.196 16 C -0.026 4.026 17 N -0.315 5.315 18 C 0.370 3.630 19 O -0.414 6.414 20 C -0.131 4.131 21 C -0.061 4.061 22 C -0.082 4.082 23 C -0.113 4.113 24 C -0.118 4.118 25 C -0.114 4.114 26 C -0.100 4.100 27 C -0.057 4.057 28 N -0.060 5.060 29 N -0.041 5.041 30 H 0.076 0.924 31 H 0.100 0.900 32 H 0.079 0.921 33 H 0.229 0.771 34 H 0.066 0.934 35 H 0.092 0.908 36 H 0.095 0.905 37 H 0.115 0.885 38 H 0.085 0.915 39 H 0.184 0.816 40 H 0.159 0.841 41 H 0.154 0.846 42 H 0.155 0.845 43 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 9.559 -3.654 -25.800 27.755 hybrid contribution -0.674 0.609 -0.166 0.923 sum 8.884 -3.046 -25.966 27.613 Atomic orbital electron populations 1.22014 0.94334 1.02612 1.02770 1.21936 0.95566 0.95796 0.84283 0.90708 1.21197 0.93150 0.92323 0.87192 0.91854 1.42668 1.05103 1.85347 1.03015 1.19244 0.93011 1.41014 0.83988 0.91028 1.24753 0.95301 1.02625 0.98127 1.69654 0.99268 1.56530 1.32544 0.86173 0.77189 0.77720 0.84984 1.21717 1.21816 1.20709 1.23590 1.01719 1.00877 0.93443 1.22749 0.93930 0.89149 0.96781 1.48442 1.48378 1.30367 1.04303 1.17058 0.81074 0.83786 0.81125 1.90782 1.38998 1.28513 1.83132 1.22612 0.99391 0.96599 0.94450 1.22586 0.94527 0.97869 0.91113 1.18830 0.98118 0.95884 0.95409 1.21058 0.99564 1.00130 0.90544 1.21128 0.95946 0.94369 1.00370 1.21110 0.97183 0.97047 0.96103 1.20829 0.98861 0.98986 0.91291 1.20462 0.96537 0.94725 0.94009 1.73939 1.14244 1.19731 0.98043 1.73553 1.03326 1.00876 1.26308 0.92378 0.90002 0.92118 0.77141 0.93424 0.90790 0.90491 0.88540 0.91524 0.81571 0.84140 0.84645 0.84463 0.83655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.04 7.93 37.16 0.29 -2.75 16 2 C 0.13 2.33 3.49 -66.95 -0.23 2.10 16 3 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 4 C 0.17 3.43 3.45 -66.09 -0.23 3.20 16 5 H 0.06 1.25 8.12 -51.93 -0.42 0.82 16 6 N -0.72 -17.60 5.02 -51.65 -0.26 -17.86 16 7 C -0.24 -6.55 9.98 -15.06 -0.15 -6.70 16 8 H 0.07 1.88 7.83 -52.49 -0.41 1.46 16 9 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 10 N -0.93 -27.82 13.06 55.49 0.72 -27.10 16 11 Si 0.91 22.18 29.55 -169.99 -5.02 17.16 16 12 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 13 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 14 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 15 C -0.15 -2.73 6.77 -24.58 -0.17 -2.89 16 16 C 0.10 1.50 5.93 -2.53 -0.02 1.48 16 17 N -0.58 -9.81 3.08 -164.08 -0.51 -10.31 16 18 C 0.58 9.70 7.62 -12.29 -0.09 9.61 16 19 O -0.54 -9.87 15.24 5.33 0.08 -9.79 16 20 C 0.00 0.04 6.79 -82.89 -0.56 -0.52 16 21 C -0.03 -0.35 9.51 -38.41 -0.37 -0.71 16 22 C -0.07 -0.73 5.75 -106.80 -0.61 -1.35 16 23 C -0.09 -0.62 9.81 -39.53 -0.39 -1.01 16 24 C -0.10 -0.49 9.96 -39.89 -0.40 -0.88 16 25 C -0.09 -0.48 9.94 -39.90 -0.40 -0.88 16 26 C -0.08 -0.59 10.00 -39.52 -0.40 -0.98 16 27 C 0.07 0.76 6.69 -84.79 -0.57 0.19 16 28 N -0.20 -2.69 11.55 32.23 0.37 -2.32 16 29 N -0.18 -2.63 7.75 33.24 0.26 -2.37 16 30 H 0.06 1.15 8.05 -51.93 -0.42 0.73 16 31 H 0.08 1.68 6.73 -51.93 -0.35 1.33 16 32 H 0.06 1.14 6.73 -51.93 -0.35 0.79 16 33 H 0.39 10.09 4.94 -40.82 -0.20 9.89 16 34 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 35 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 36 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 37 H 0.10 1.47 5.88 -51.93 -0.31 1.16 16 38 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.17 1.61 7.69 -52.49 -0.40 1.21 16 40 H 0.14 0.60 8.06 -52.48 -0.42 0.18 16 41 H 0.14 0.29 8.06 -52.48 -0.42 -0.13 16 42 H 0.14 0.31 8.06 -52.48 -0.42 -0.12 16 43 H 0.15 0.86 8.06 -52.49 -0.42 0.44 16 LS Contribution 354.76 15.07 5.35 5.35 Total: -1.00 -32.59 354.76 -8.76 -41.35 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: -5.38 Total: 8.43 kcal Atomic # 6 Polarization: 1.84 SS G_CDS: -4.37 Total: -2.53 kcal Atomic # 7 Polarization: -60.55 SS G_CDS: 0.59 Total: -59.96 kcal Atomic # 8 Polarization: -9.87 SS G_CDS: 0.08 Total: -9.79 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -32.59 -8.76 -41.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986635298.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.272 kcal (2) G-P(sol) polarization free energy of solvation -32.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.350 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds