Wall clock time and date at job start Tue Mar 31 2020 14:44:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.99803 * 2 1 4 4 C 1.54323 * 109.88097 * 238.90718 * 2 1 3 5 5 H 1.09005 * 110.71676 * 99.84755 * 4 2 1 6 6 N 1.46503 * 110.72280 * 336.75383 * 4 2 1 7 7 C 1.36933 * 120.00104 * 157.43941 * 6 4 2 8 8 H 1.08001 * 120.00079 * 359.97438 * 7 6 4 9 9 C 1.38813 * 120.00111 * 179.97438 * 7 6 4 10 10 N 1.31628 * 119.99817 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 120.00403 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47153 * 180.02562 * 11 9 7 13 13 H 1.48502 * 109.46743 * 299.99963 * 11 9 7 14 14 H 1.48497 * 109.47209 * 59.99610 * 11 9 7 15 15 C 1.55153 * 103.10263 * 218.30176 * 4 2 1 16 16 C 1.55382 * 101.36540 * 35.49565 * 15 4 2 17 17 N 1.47016 * 109.88219 * 121.09869 * 2 1 3 18 18 C 1.34776 * 125.64999 * 298.32362 * 17 2 1 19 19 O 1.21544 * 119.99837 * 354.70704 * 18 17 2 20 20 C 1.47871 * 120.00010 * 174.71152 * 18 17 2 21 21 C 1.38949 * 121.42403 * 322.47733 * 20 18 17 22 22 N 1.32579 * 120.34544 * 180.02562 * 21 20 18 23 23 N 1.28380 * 123.42708 * 359.97438 * 22 21 20 24 24 C 1.33466 * 121.85364 * 359.97438 * 23 22 21 25 25 C 1.40584 * 121.73495 * 180.02562 * 24 23 22 26 26 C 1.36129 * 119.60511 * 179.23826 * 25 24 23 27 27 C 1.39366 * 121.12820 * 0.73183 * 26 25 24 28 28 C 1.36337 * 120.88832 * 359.52736 * 27 26 25 29 29 C 1.39852 * 119.49908 * 359.97311 * 28 27 26 30 30 H 1.08998 * 109.47407 * 181.09164 * 1 2 3 31 31 H 1.09003 * 109.47382 * 301.09173 * 1 2 3 32 32 H 1.09007 * 109.47272 * 61.09287 * 1 2 3 33 33 H 0.97001 * 119.99952 * 337.44223 * 6 4 2 34 34 H 0.96995 * 119.99692 * 180.02562 * 10 9 7 35 35 H 1.09002 * 111.00351 * 153.66746 * 15 4 2 36 36 H 1.09000 * 111.00252 * 277.51742 * 15 4 2 37 37 H 1.09005 * 110.34438 * 204.17180 * 16 15 4 38 38 H 1.08994 * 110.35029 * 81.87127 * 16 15 4 39 39 H 1.08009 * 119.83140 * 359.97438 * 21 20 18 40 40 H 1.07996 * 120.20247 * 359.97283 * 25 24 23 41 41 H 1.08003 * 119.43141 * 180.21341 * 26 25 24 42 42 H 1.08004 * 119.55635 * 179.49576 * 27 26 25 43 43 H 1.07999 * 120.25381 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0548 -0.7495 -1.2428 5 1 2.3499 -0.0459 -2.0213 6 7 1.0471 -1.6854 -1.7476 7 6 1.0905 -2.1004 -3.0518 8 1 1.8673 -1.7373 -3.7085 9 6 0.1360 -2.9876 -3.5300 10 7 -0.8110 -3.4297 -2.7298 11 14 0.1955 -3.5543 -5.3089 12 1 -0.9265 -4.4921 -5.5675 13 1 0.0739 -2.3781 -6.2073 14 1 1.4859 -4.2425 -5.5664 15 6 3.2896 -1.5141 -0.6970 16 6 2.8145 -1.8795 0.7366 17 7 2.0300 -0.7141 1.1838 18 6 1.8085 -0.3614 2.4656 19 8 1.2268 0.6753 2.7188 20 6 2.2733 -1.2357 3.5639 21 6 2.2191 -2.6202 3.4600 22 7 2.6412 -3.3838 4.4583 23 7 3.1149 -2.9153 5.5557 24 6 3.2189 -1.6028 5.7744 25 6 3.7386 -1.0924 6.9769 26 6 3.8395 0.2543 7.1479 27 6 3.4220 1.1398 6.1560 28 6 2.9082 0.6812 4.9794 29 6 2.7997 -0.6967 4.7660 30 1 -0.3634 -1.0274 0.0196 31 1 -0.3634 0.5307 0.8800 32 1 -0.3634 0.4968 -0.8997 33 1 0.3492 -2.0112 -1.1579 34 1 -1.4777 -4.0500 -3.0638 35 1 3.4870 -2.4092 -1.2868 36 1 4.1667 -0.8677 -0.6653 37 1 3.6716 -2.0339 1.3921 38 1 2.1886 -2.7715 0.7126 39 1 1.8303 -3.0768 2.5617 40 1 4.0668 -1.7649 7.7556 41 1 4.2423 0.6432 8.0714 42 1 3.5062 2.2037 6.3218 43 1 2.5875 1.3766 4.2179 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987058533.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:11 Heat of formation + Delta-G solvation = 74.875701 kcal Electronic energy + Delta-G solvation = -27538.083098 eV Core-core repulsion = 23777.673889 eV Total energy + Delta-G solvation = -3760.409209 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.73216 -39.98415 -38.13323 -37.65238 -34.32674 -33.80603 -31.89048 -31.77162 -30.95966 -30.53478 -28.93817 -26.08138 -25.44469 -24.56436 -23.76275 -23.33601 -22.24779 -20.11995 -19.19564 -18.82127 -18.39126 -17.61501 -17.08313 -16.42929 -15.96893 -15.41807 -15.27874 -15.09414 -14.73941 -14.39837 -14.20633 -13.95540 -13.66269 -13.35891 -12.99670 -12.88138 -12.66023 -12.61581 -12.38937 -12.08123 -11.94005 -11.41894 -11.15916 -11.06278 -11.04802 -10.95816 -10.81178 -10.71091 -10.52530 -10.32997 -10.12822 -9.70283 -9.66812 -9.59188 -9.02601 -8.69940 -8.54247 -7.11255 -5.88200 -3.18586 -0.48976 0.35723 1.32397 2.42149 2.70631 2.86569 3.37524 3.42721 3.43779 3.64213 3.71863 4.05495 4.10697 4.19118 4.47240 4.48992 4.61521 4.78494 4.85142 4.89789 5.05903 5.19991 5.30501 5.32834 5.44009 5.49720 5.53577 5.61473 5.65419 5.67261 5.83477 5.86798 5.91509 5.94999 6.03305 6.19442 6.30394 6.35809 6.37827 6.48334 6.57512 6.71944 6.88072 7.50732 7.59979 8.00911 8.29743 8.36170 9.41611 9.94862 10.29813 11.33743 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.023976 B = 0.003023 C = 0.002853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.569177 B = 9260.224142 C = 9810.903689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.127 3.873 3 H 0.076 0.924 4 C 0.172 3.828 5 H 0.072 0.928 6 N -0.714 5.714 7 C -0.247 4.247 8 H 0.072 0.928 9 C -0.007 4.007 10 N -0.930 5.930 11 Si 0.908 3.092 12 H -0.291 1.291 13 H -0.286 1.286 14 H -0.285 1.285 15 C -0.158 4.158 16 C 0.096 3.904 17 N -0.594 5.594 18 C 0.576 3.424 19 O -0.528 6.528 20 C -0.095 4.095 21 C 0.047 3.953 22 N -0.218 5.218 23 N -0.193 5.193 24 C 0.059 3.941 25 C -0.078 4.078 26 C -0.098 4.098 27 C -0.094 4.094 28 C -0.097 4.097 29 C -0.028 4.028 30 H 0.067 0.933 31 H 0.053 0.947 32 H 0.071 0.929 33 H 0.388 0.612 34 H 0.257 0.743 35 H 0.092 0.908 36 H 0.063 0.937 37 H 0.065 0.935 38 H 0.078 0.922 39 H 0.183 0.817 40 H 0.145 0.855 41 H 0.137 0.863 42 H 0.136 0.864 43 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.422 7.951 16.943 21.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.024 3.976 3 H 0.094 0.906 4 C 0.060 3.940 5 H 0.090 0.910 6 N -0.356 5.356 7 C -0.378 4.378 8 H 0.090 0.910 9 C -0.204 4.204 10 N -0.577 5.577 11 Si 0.739 3.261 12 H -0.217 1.217 13 H -0.212 1.212 14 H -0.212 1.212 15 C -0.199 4.199 16 C -0.026 4.026 17 N -0.327 5.327 18 C 0.362 3.638 19 O -0.406 6.406 20 C -0.111 4.111 21 C -0.105 4.105 22 N -0.071 5.071 23 N -0.048 5.048 24 C -0.070 4.070 25 C -0.099 4.099 26 C -0.119 4.119 27 C -0.113 4.113 28 C -0.115 4.115 29 C -0.038 4.038 30 H 0.086 0.914 31 H 0.072 0.928 32 H 0.090 0.910 33 H 0.225 0.775 34 H 0.067 0.933 35 H 0.110 0.890 36 H 0.081 0.919 37 H 0.084 0.916 38 H 0.097 0.903 39 H 0.199 0.801 40 H 0.163 0.837 41 H 0.155 0.845 42 H 0.154 0.846 43 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 10.277 6.974 17.425 21.398 hybrid contribution -0.487 0.750 -1.358 1.626 sum 9.789 7.724 16.067 20.338 Atomic orbital electron populations 1.21943 0.93883 1.03144 1.01936 1.22102 0.95583 0.95827 0.84049 0.90608 1.21203 0.89124 0.91724 0.91941 0.91038 1.42566 1.30955 1.51587 1.10524 1.19168 1.09980 1.21462 0.87218 0.91037 1.24750 0.97640 0.99989 0.98040 1.69643 1.17049 1.36112 1.34884 0.86265 0.76995 0.78232 0.84624 1.21703 1.21217 1.21201 1.23615 0.99324 1.02675 0.94304 1.22634 0.94455 0.88626 0.96891 1.48580 1.50931 1.28682 1.04490 1.17355 0.80167 0.85055 0.81200 1.90756 1.42577 1.24139 1.83117 1.21200 0.99334 0.95339 0.95227 1.24596 0.95723 0.90436 0.99755 1.73079 1.05741 1.31975 0.96258 1.73617 1.07191 1.11349 1.12599 1.20351 0.99721 0.91326 0.95582 1.20797 0.98136 0.95799 0.95192 1.21084 0.98321 0.92911 0.99563 1.21205 0.96323 1.00763 0.93045 1.21331 0.97497 0.93752 0.98932 1.18643 0.96745 0.95626 0.92740 0.91365 0.92815 0.90974 0.77493 0.93270 0.88956 0.91880 0.91639 0.90342 0.80053 0.83699 0.84491 0.84649 0.83051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.66 8.47 37.16 0.31 -2.34 16 2 C 0.13 2.06 3.40 -66.96 -0.23 1.83 16 3 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 4 C 0.17 3.03 3.46 -66.10 -0.23 2.80 16 5 H 0.07 1.25 8.11 -51.93 -0.42 0.83 16 6 N -0.71 -15.94 4.61 -51.65 -0.24 -16.18 16 7 C -0.25 -6.28 9.97 -15.06 -0.15 -6.43 16 8 H 0.07 1.75 7.83 -52.49 -0.41 1.34 16 9 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 10 N -0.93 -26.52 13.06 55.49 0.72 -25.80 16 11 Si 0.91 21.30 29.55 -169.99 -5.02 16.28 16 12 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 13 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 14 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 15 C -0.16 -2.38 6.81 -24.33 -0.17 -2.54 16 16 C 0.10 1.36 5.26 -2.27 -0.01 1.35 16 17 N -0.59 -9.01 3.07 -163.81 -0.50 -9.51 16 18 C 0.58 8.96 7.00 -12.32 -0.09 8.87 16 19 O -0.53 -9.22 14.10 5.33 0.08 -9.15 16 20 C -0.10 -1.36 5.43 -104.31 -0.57 -1.93 16 21 C 0.05 0.65 9.53 -16.97 -0.16 0.49 16 22 N -0.22 -3.24 11.47 30.73 0.35 -2.89 16 23 N -0.19 -2.75 11.52 32.21 0.37 -2.38 16 24 C 0.06 0.75 6.69 -84.87 -0.57 0.19 16 25 C -0.08 -0.72 10.01 -39.46 -0.39 -1.11 16 26 C -0.10 -0.72 9.94 -39.92 -0.40 -1.11 16 27 C -0.09 -0.78 9.96 -39.85 -0.40 -1.17 16 28 C -0.10 -1.11 9.21 -39.66 -0.37 -1.47 16 29 C -0.03 -0.38 5.77 -106.50 -0.61 -0.99 16 30 H 0.07 1.34 6.21 -51.93 -0.32 1.02 16 31 H 0.05 0.94 7.09 -51.93 -0.37 0.57 16 32 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 33 H 0.39 9.33 5.58 -40.82 -0.23 9.10 16 34 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 35 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 36 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 37 H 0.07 0.81 7.32 -51.93 -0.38 0.43 16 38 H 0.08 1.17 7.02 -51.93 -0.36 0.81 16 39 H 0.18 2.33 5.98 -52.48 -0.31 2.02 16 40 H 0.15 1.02 8.06 -52.49 -0.42 0.59 16 41 H 0.14 0.54 8.06 -52.48 -0.42 0.12 16 42 H 0.14 0.75 8.06 -52.48 -0.42 0.33 16 43 H 0.15 1.87 6.04 -52.49 -0.32 1.55 16 LS Contribution 351.32 15.07 5.29 5.29 Total: -1.00 -30.23 351.32 -8.28 -38.51 By element: Atomic # 1 Polarization: 14.92 SS G_CDS: -5.22 Total: 9.70 kcal Atomic # 6 Polarization: 0.24 SS G_CDS: -4.11 Total: -3.87 kcal Atomic # 7 Polarization: -57.47 SS G_CDS: 0.71 Total: -56.76 kcal Atomic # 8 Polarization: -9.22 SS G_CDS: 0.08 Total: -9.15 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -30.23 -8.28 -38.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987058533.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.382 kcal (2) G-P(sol) polarization free energy of solvation -30.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.507 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds