Wall clock time and date at job start Tue Mar 31 2020 14:44:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.99803 * 2 1 4 4 C 1.54323 * 109.88097 * 238.90718 * 2 1 3 5 5 H 1.09005 * 110.71676 * 99.84755 * 4 2 1 6 6 N 1.46503 * 110.72280 * 336.75383 * 4 2 1 7 7 C 1.36933 * 120.00104 * 157.43941 * 6 4 2 8 8 H 1.08001 * 120.00079 * 359.97438 * 7 6 4 9 9 C 1.38813 * 120.00111 * 179.97438 * 7 6 4 10 10 N 1.31628 * 119.99817 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 120.00403 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47153 * 180.02562 * 11 9 7 13 13 H 1.48502 * 109.46743 * 299.99963 * 11 9 7 14 14 H 1.48497 * 109.47209 * 59.99610 * 11 9 7 15 15 C 1.55153 * 103.10263 * 218.30176 * 4 2 1 16 16 C 1.55382 * 101.36540 * 35.49565 * 15 4 2 17 17 N 1.47016 * 109.88219 * 121.09869 * 2 1 3 18 18 C 1.34776 * 125.64999 * 298.32362 * 17 2 1 19 19 O 1.21544 * 119.99837 * 354.70704 * 18 17 2 20 20 C 1.47871 * 120.00010 * 174.71152 * 18 17 2 21 21 C 1.38949 * 121.42403 * 322.47733 * 20 18 17 22 22 N 1.32579 * 120.34544 * 180.02562 * 21 20 18 23 23 N 1.28380 * 123.42708 * 359.97438 * 22 21 20 24 24 C 1.33466 * 121.85364 * 359.97438 * 23 22 21 25 25 C 1.40584 * 121.73495 * 180.02562 * 24 23 22 26 26 C 1.36129 * 119.60511 * 179.23826 * 25 24 23 27 27 C 1.39366 * 121.12820 * 0.73183 * 26 25 24 28 28 C 1.36337 * 120.88832 * 359.52736 * 27 26 25 29 29 C 1.39852 * 119.49908 * 359.97311 * 28 27 26 30 30 H 1.08998 * 109.47407 * 181.09164 * 1 2 3 31 31 H 1.09003 * 109.47382 * 301.09173 * 1 2 3 32 32 H 1.09007 * 109.47272 * 61.09287 * 1 2 3 33 33 H 0.97001 * 119.99952 * 337.44223 * 6 4 2 34 34 H 0.96995 * 119.99692 * 180.02562 * 10 9 7 35 35 H 1.09002 * 111.00351 * 153.66746 * 15 4 2 36 36 H 1.09000 * 111.00252 * 277.51742 * 15 4 2 37 37 H 1.09005 * 110.34438 * 204.17180 * 16 15 4 38 38 H 1.08994 * 110.35029 * 81.87127 * 16 15 4 39 39 H 1.08009 * 119.83140 * 359.97438 * 21 20 18 40 40 H 1.07996 * 120.20247 * 359.97283 * 25 24 23 41 41 H 1.08003 * 119.43141 * 180.21341 * 26 25 24 42 42 H 1.08004 * 119.55635 * 179.49576 * 27 26 25 43 43 H 1.07999 * 120.25381 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0548 -0.7495 -1.2428 5 1 2.3499 -0.0459 -2.0213 6 7 1.0471 -1.6854 -1.7476 7 6 1.0905 -2.1004 -3.0518 8 1 1.8673 -1.7373 -3.7085 9 6 0.1360 -2.9876 -3.5300 10 7 -0.8110 -3.4297 -2.7298 11 14 0.1955 -3.5543 -5.3089 12 1 -0.9265 -4.4921 -5.5675 13 1 0.0739 -2.3781 -6.2073 14 1 1.4859 -4.2425 -5.5664 15 6 3.2896 -1.5141 -0.6970 16 6 2.8145 -1.8795 0.7366 17 7 2.0300 -0.7141 1.1838 18 6 1.8085 -0.3614 2.4656 19 8 1.2268 0.6753 2.7188 20 6 2.2733 -1.2357 3.5639 21 6 2.2191 -2.6202 3.4600 22 7 2.6412 -3.3838 4.4583 23 7 3.1149 -2.9153 5.5557 24 6 3.2189 -1.6028 5.7744 25 6 3.7386 -1.0924 6.9769 26 6 3.8395 0.2543 7.1479 27 6 3.4220 1.1398 6.1560 28 6 2.9082 0.6812 4.9794 29 6 2.7997 -0.6967 4.7660 30 1 -0.3634 -1.0274 0.0196 31 1 -0.3634 0.5307 0.8800 32 1 -0.3634 0.4968 -0.8997 33 1 0.3492 -2.0112 -1.1579 34 1 -1.4777 -4.0500 -3.0638 35 1 3.4870 -2.4092 -1.2868 36 1 4.1667 -0.8677 -0.6653 37 1 3.6716 -2.0339 1.3921 38 1 2.1886 -2.7715 0.7126 39 1 1.8303 -3.0768 2.5617 40 1 4.0668 -1.7649 7.7556 41 1 4.2423 0.6432 8.0714 42 1 3.5062 2.2037 6.3218 43 1 2.5875 1.3766 4.2179 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987058533.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:10 Heat of formation + Delta-G solvation = 56.212790 kcal Electronic energy + Delta-G solvation = -27538.892383 eV Core-core repulsion = 23777.673889 eV Total energy + Delta-G solvation = -3761.218494 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.71841 -41.21578 -39.12372 -38.83315 -35.86709 -34.99473 -33.34307 -32.76750 -32.30258 -31.52786 -30.49167 -27.16074 -26.82964 -25.61497 -25.40580 -24.41266 -23.34990 -21.39250 -20.37300 -19.77096 -19.50372 -19.27796 -18.30181 -17.72987 -16.97322 -16.50687 -16.36813 -16.21068 -16.09209 -15.71379 -15.55296 -15.19435 -14.88651 -14.68150 -14.27425 -14.23000 -13.92362 -13.48847 -13.43323 -13.33907 -13.01404 -12.88481 -12.84731 -12.58500 -12.45284 -12.29517 -12.10925 -12.05125 -11.92620 -11.67951 -11.59526 -11.47048 -10.90970 -10.72744 -10.49393 -9.84916 -9.50156 -8.99673 -7.91183 -5.19346 -1.43733 -0.53343 0.46700 1.37292 1.51380 1.52469 1.58400 1.61744 1.78282 2.58570 2.74649 2.78068 3.00011 3.13269 3.26066 3.40136 3.62767 3.66197 3.72285 3.86008 3.91294 4.07348 4.14951 4.16925 4.22426 4.30362 4.35184 4.43753 4.50057 4.60987 4.72748 4.77860 4.87306 4.90606 4.99990 5.00704 5.14821 5.20924 5.25630 5.30869 5.31676 5.39902 5.58209 5.66645 6.27089 6.30055 6.77974 7.34901 7.38078 8.10880 8.34301 9.31700 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.023976 B = 0.003023 C = 0.002853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.569177 B = 9260.224142 C = 9810.903689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.134 3.866 3 H 0.092 0.908 4 C 0.165 3.835 5 H 0.079 0.921 6 N -0.725 5.725 7 C -0.234 4.234 8 H 0.081 0.919 9 C -0.072 4.072 10 N -0.968 5.968 11 Si 0.967 3.033 12 H -0.303 1.303 13 H -0.280 1.280 14 H -0.278 1.278 15 C -0.145 4.145 16 C 0.101 3.899 17 N -0.593 5.593 18 C 0.579 3.421 19 O -0.550 6.550 20 C -0.113 4.113 21 C 0.046 3.954 22 N -0.245 5.245 23 N -0.205 5.205 24 C 0.045 3.955 25 C -0.082 4.082 26 C -0.081 4.081 27 C -0.066 4.066 28 C -0.129 4.129 29 C -0.037 4.037 30 H 0.042 0.958 31 H 0.052 0.948 32 H 0.065 0.935 33 H 0.377 0.623 34 H 0.249 0.751 35 H 0.079 0.921 36 H 0.092 0.908 37 H 0.087 0.913 38 H 0.066 0.934 39 H 0.183 0.817 40 H 0.168 0.832 41 H 0.184 0.816 42 H 0.171 0.829 43 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.963 9.844 18.932 24.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.031 3.969 3 H 0.110 0.890 4 C 0.055 3.945 5 H 0.097 0.903 6 N -0.366 5.366 7 C -0.366 4.366 8 H 0.099 0.901 9 C -0.264 4.264 10 N -0.619 5.619 11 Si 0.797 3.203 12 H -0.230 1.230 13 H -0.206 1.206 14 H -0.204 1.204 15 C -0.186 4.186 16 C -0.021 4.021 17 N -0.325 5.325 18 C 0.367 3.633 19 O -0.430 6.430 20 C -0.128 4.128 21 C -0.106 4.106 22 N -0.097 5.097 23 N -0.059 5.059 24 C -0.086 4.086 25 C -0.103 4.103 26 C -0.101 4.101 27 C -0.085 4.085 28 C -0.147 4.147 29 C -0.046 4.046 30 H 0.061 0.939 31 H 0.071 0.929 32 H 0.084 0.916 33 H 0.212 0.788 34 H 0.057 0.943 35 H 0.098 0.902 36 H 0.111 0.889 37 H 0.105 0.895 38 H 0.084 0.916 39 H 0.200 0.800 40 H 0.186 0.814 41 H 0.202 0.798 42 H 0.189 0.811 43 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 12.877 8.879 19.412 24.930 hybrid contribution -1.172 0.356 -1.764 2.148 sum 11.705 9.235 17.648 23.103 Atomic orbital electron populations 1.21792 0.95207 1.01274 1.01479 1.21957 0.94394 0.96527 0.84039 0.88988 1.21414 0.89053 0.91362 0.92660 0.90298 1.42698 1.31934 1.52378 1.09615 1.19567 1.08944 1.19718 0.88390 0.90067 1.25460 0.98139 1.01352 1.01445 1.69803 1.18195 1.37515 1.36383 0.85302 0.76591 0.77571 0.80796 1.22982 1.20615 1.20405 1.23468 0.98939 1.02156 0.94047 1.22615 0.94781 0.87781 0.96899 1.48540 1.50974 1.28746 1.04262 1.17523 0.79540 0.84836 0.81373 1.90732 1.43560 1.25218 1.83466 1.21062 1.01060 0.95104 0.95572 1.24546 0.95883 0.90439 0.99747 1.73018 1.07275 1.32552 0.96858 1.73496 1.07282 1.12606 1.12476 1.20772 1.00329 0.90580 0.96875 1.21208 0.97533 0.97304 0.94248 1.21610 0.96103 0.91736 1.00606 1.21714 0.92582 1.02895 0.91339 1.21325 1.00211 0.92665 1.00524 1.18875 0.96580 0.96726 0.92408 0.93869 0.92916 0.91628 0.78766 0.94256 0.90220 0.88939 0.89510 0.91606 0.80012 0.81417 0.79825 0.81114 0.84429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.05 8.47 71.98 0.61 -4.44 16 2 C 0.13 4.30 3.40 45.34 0.15 4.46 16 3 H 0.09 2.70 8.14 -2.39 -0.02 2.68 16 4 C 0.17 5.70 3.46 46.18 0.16 5.86 16 5 H 0.08 2.63 8.11 -2.38 -0.02 2.61 16 6 N -0.72 -32.81 4.61 -317.33 -1.46 -34.28 16 7 C -0.23 -11.92 9.97 84.03 0.84 -11.08 16 8 H 0.08 3.90 7.83 -2.91 -0.02 3.88 16 9 C -0.07 -3.89 5.50 84.86 0.47 -3.43 16 10 N -0.97 -57.10 13.06 21.65 0.28 -56.82 16 11 Si 0.97 44.40 29.55 68.60 2.03 46.43 16 12 H -0.30 -14.37 7.11 99.48 0.71 -13.67 16 13 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 14 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 15 C -0.15 -4.19 6.81 32.15 0.22 -3.97 16 16 C 0.10 2.83 5.26 87.02 0.46 3.29 16 17 N -0.59 -17.95 3.07 -790.46 -2.42 -20.38 16 18 C 0.58 18.22 7.00 86.79 0.61 18.83 16 19 O -0.55 -19.43 14.10 -3.85 -0.05 -19.48 16 20 C -0.11 -3.26 5.43 -19.66 -0.11 -3.37 16 21 C 0.05 1.33 9.53 84.75 0.81 2.13 16 22 N -0.25 -7.47 11.47 -56.68 -0.65 -8.12 16 23 N -0.20 -5.81 11.52 -51.99 -0.60 -6.41 16 24 C 0.04 1.08 6.69 40.38 0.27 1.35 16 25 C -0.08 -1.24 10.01 22.35 0.22 -1.01 16 26 C -0.08 -0.76 9.94 22.05 0.22 -0.54 16 27 C -0.07 -0.82 9.96 22.10 0.22 -0.60 16 28 C -0.13 -2.73 9.21 22.22 0.20 -2.53 16 29 C -0.04 -0.95 5.77 -21.08 -0.12 -1.07 16 30 H 0.04 1.77 6.21 -2.39 -0.01 1.76 16 31 H 0.05 1.89 7.09 -2.39 -0.02 1.87 16 32 H 0.06 2.42 8.14 -2.38 -0.02 2.40 16 33 H 0.38 18.81 5.58 -92.71 -0.52 18.29 16 34 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 35 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 36 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 37 H 0.09 2.08 7.32 -2.38 -0.02 2.07 16 38 H 0.07 2.03 7.02 -2.39 -0.02 2.01 16 39 H 0.18 4.99 5.98 -2.91 -0.02 4.97 16 40 H 0.17 1.71 8.06 -2.91 -0.02 1.69 16 41 H 0.18 0.14 8.06 -2.91 -0.02 0.12 16 42 H 0.17 0.94 8.06 -2.91 -0.02 0.92 16 43 H 0.14 3.32 6.04 -2.91 -0.02 3.30 16 Total: -1.00 -68.05 351.32 2.89 -65.15 By element: Atomic # 1 Polarization: 29.49 SS G_CDS: 0.54 Total: 30.03 kcal Atomic # 6 Polarization: -1.36 SS G_CDS: 5.23 Total: 3.87 kcal Atomic # 7 Polarization: -121.15 SS G_CDS: -4.85 Total: -126.00 kcal Atomic # 8 Polarization: -19.43 SS G_CDS: -0.05 Total: -19.48 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Total: -68.05 2.89 -65.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987058533.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.364 kcal (2) G-P(sol) polarization free energy of solvation -68.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.151 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds