Wall clock time and date at job start Tue Mar 31 2020 14:44:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08993 * 110.00107 * 2 1 4 4 C 1.54338 * 109.98966 * 238.95894 * 2 1 3 5 5 H 1.08999 * 110.52083 * 336.97791 * 4 2 1 6 6 N 1.46501 * 110.84940 * 100.20376 * 4 2 1 7 7 C 1.36936 * 119.99962 * 200.14849 * 6 4 2 8 8 H 1.07997 * 119.99876 * 359.97438 * 7 6 4 9 9 C 1.38809 * 119.99880 * 179.97438 * 7 6 4 10 10 N 1.31620 * 120.00098 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 119.99854 * 179.97438 * 9 7 6 12 12 H 1.48495 * 109.47319 * 60.00028 * 11 9 7 13 13 H 1.48503 * 109.47115 * 180.02562 * 11 9 7 14 14 H 1.48501 * 109.47316 * 299.99501 * 11 9 7 15 15 C 1.55156 * 103.02111 * 218.66563 * 4 2 1 16 16 C 1.54914 * 101.57905 * 35.30967 * 15 4 2 17 17 N 1.47029 * 109.88226 * 121.09697 * 2 1 3 18 18 C 1.34772 * 125.64424 * 298.39537 * 17 2 1 19 19 O 1.21544 * 120.00163 * 3.73041 * 18 17 2 20 20 C 1.47873 * 120.00005 * 183.73343 * 18 17 2 21 21 C 1.38948 * 121.41965 * 323.92936 * 20 18 17 22 22 N 1.32579 * 120.33295 * 179.97438 * 21 20 18 23 23 N 1.28374 * 123.43954 * 0.02562 * 22 21 20 24 24 C 1.33468 * 121.85189 * 359.97438 * 23 22 21 25 25 C 1.40590 * 121.74571 * 179.97438 * 24 23 22 26 26 C 1.36115 * 119.61008 * 180.02562 * 25 24 23 27 27 C 1.39372 * 121.13297 * 0.27656 * 26 25 24 28 28 C 1.36342 * 120.88311 * 359.43089 * 27 26 25 29 29 C 1.39864 * 119.49893 * 0.55966 * 28 27 26 30 30 H 1.08999 * 109.46714 * 300.36092 * 1 2 3 31 31 H 1.09000 * 109.46517 * 60.35818 * 1 2 3 32 32 H 1.08993 * 109.46988 * 180.35881 * 1 2 3 33 33 H 0.97000 * 120.00305 * 20.13742 * 6 4 2 34 34 H 0.97003 * 120.00087 * 179.97438 * 10 9 7 35 35 H 1.08998 * 111.00897 * 277.23387 * 15 4 2 36 36 H 1.09001 * 111.03935 * 153.39297 * 15 4 2 37 37 H 1.08999 * 110.36170 * 204.15006 * 16 15 4 38 38 H 1.09004 * 110.36850 * 81.83274 * 16 15 4 39 39 H 1.07997 * 119.83431 * 359.97438 * 21 20 18 40 40 H 1.07999 * 120.19642 * 359.97438 * 25 24 23 41 41 H 1.08000 * 119.43455 * 179.97438 * 26 25 24 42 42 H 1.08000 * 119.56183 * 179.70171 * 27 26 25 43 43 H 1.07997 * 120.25263 * 180.26035 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0576 -0.7479 -1.2427 5 1 1.3053 -1.4407 -1.6197 6 7 2.4638 0.1967 -2.2863 7 6 2.5655 -0.2215 -3.5863 8 1 2.3467 -1.2476 -3.8422 9 6 2.9499 0.6736 -4.5752 10 7 3.2160 1.9244 -4.2634 11 14 3.0893 0.1031 -6.3484 12 1 1.7710 -0.3992 -6.8120 13 1 3.5141 1.2411 -7.2026 14 1 4.0944 -0.9862 -6.4404 15 6 3.2864 -1.5184 -0.6915 16 6 2.8098 -1.8826 0.7369 17 7 2.0301 -0.7141 1.1840 18 6 1.8074 -0.3621 2.4657 19 8 1.0863 0.5827 2.7199 20 6 2.4404 -1.1252 3.5627 21 6 2.6183 -2.5008 3.4795 22 7 3.1890 -3.1636 4.4759 23 7 3.6040 -2.6020 5.5531 24 6 3.4893 -1.2871 5.7511 25 6 3.9441 -0.6744 6.9320 26 6 3.8048 0.6705 7.0886 27 6 3.2126 1.4536 6.0994 28 6 2.7653 0.8950 4.9389 29 6 2.8925 -0.4842 4.7447 30 1 -0.3633 0.5194 0.8867 31 1 -0.3632 0.5083 -0.8932 32 1 -0.3633 -1.0276 0.0064 33 1 2.6605 1.1183 -2.0565 34 1 3.4850 2.5498 -4.9544 35 1 4.1670 -0.8770 -0.6579 36 1 3.4813 -2.4157 -1.2788 37 1 3.6655 -2.0412 1.3932 38 1 2.1801 -2.7719 0.7116 39 1 2.2901 -3.0327 2.5988 40 1 4.4006 -1.2675 7.7106 41 1 4.1548 1.1381 7.9970 42 1 3.1106 2.5179 6.2523 43 1 2.3117 1.5121 4.1774 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987058536.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:17 Heat of formation + Delta-G solvation = 70.754359 kcal Electronic energy + Delta-G solvation = -27219.111248 eV Core-core repulsion = 23458.523324 eV Total energy + Delta-G solvation = -3760.587924 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.81004 -40.03287 -38.19103 -37.62816 -34.45798 -33.92882 -31.94855 -31.83618 -31.08713 -30.55174 -29.21802 -26.15160 -25.46756 -24.63251 -23.63283 -23.08234 -22.31409 -20.37443 -19.52596 -18.94896 -18.54351 -17.39173 -17.18602 -16.44730 -16.00559 -15.45435 -15.33677 -15.15695 -14.70662 -14.60940 -14.31712 -13.78340 -13.61928 -13.52428 -13.10107 -12.98694 -12.71412 -12.66616 -12.36428 -12.16682 -12.03005 -11.72011 -11.31576 -11.16805 -11.10759 -11.02281 -10.87437 -10.70627 -10.58193 -10.36341 -10.11476 -9.82645 -9.71421 -9.63882 -9.02230 -8.75761 -8.63242 -7.12039 -5.88473 -3.19665 -0.55314 0.29380 1.28081 2.35712 2.59881 2.80079 3.37284 3.42252 3.43169 3.58857 3.63648 3.98603 4.00789 4.11348 4.43625 4.47892 4.54305 4.74338 4.79952 4.84095 5.00650 5.14401 5.19420 5.24902 5.31598 5.40673 5.46219 5.54405 5.60586 5.63452 5.75879 5.79636 5.90119 5.94004 6.01630 6.01658 6.16701 6.30614 6.32957 6.45667 6.48510 6.54098 6.80117 7.40886 7.58805 7.92862 8.27622 8.28442 9.40194 9.93016 10.27604 11.33473 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.022037 B = 0.002800 C = 0.002699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.291628 B = 9998.594792 C =10372.722584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.127 3.873 3 H 0.082 0.918 4 C 0.177 3.823 5 H 0.067 0.933 6 N -0.714 5.714 7 C -0.247 4.247 8 H 0.072 0.928 9 C -0.008 4.008 10 N -0.930 5.930 11 Si 0.909 3.091 12 H -0.285 1.285 13 H -0.291 1.291 14 H -0.285 1.285 15 C -0.155 4.155 16 C 0.086 3.914 17 N -0.595 5.595 18 C 0.575 3.425 19 O -0.524 6.524 20 C -0.095 4.095 21 C 0.039 3.961 22 N -0.221 5.221 23 N -0.192 5.192 24 C 0.061 3.939 25 C -0.080 4.080 26 C -0.096 4.096 27 C -0.092 4.092 28 C -0.097 4.097 29 C -0.027 4.027 30 H 0.064 0.936 31 H 0.073 0.927 32 H 0.052 0.948 33 H 0.386 0.614 34 H 0.258 0.742 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.072 0.928 38 H 0.074 0.926 39 H 0.182 0.818 40 H 0.146 0.854 41 H 0.138 0.862 42 H 0.137 0.863 43 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.070 -4.946 20.974 21.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.024 3.976 3 H 0.100 0.900 4 C 0.065 3.935 5 H 0.085 0.915 6 N -0.354 5.354 7 C -0.377 4.377 8 H 0.090 0.910 9 C -0.205 4.205 10 N -0.577 5.577 11 Si 0.740 3.260 12 H -0.211 1.211 13 H -0.217 1.217 14 H -0.212 1.212 15 C -0.196 4.196 16 C -0.037 4.037 17 N -0.327 5.327 18 C 0.361 3.639 19 O -0.402 6.402 20 C -0.110 4.110 21 C -0.112 4.112 22 N -0.074 5.074 23 N -0.047 5.047 24 C -0.068 4.068 25 C -0.101 4.101 26 C -0.116 4.116 27 C -0.112 4.112 28 C -0.115 4.115 29 C -0.036 4.036 30 H 0.083 0.917 31 H 0.092 0.908 32 H 0.071 0.929 33 H 0.220 0.780 34 H 0.067 0.933 35 H 0.096 0.904 36 H 0.099 0.901 37 H 0.090 0.910 38 H 0.092 0.908 39 H 0.198 0.802 40 H 0.163 0.837 41 H 0.156 0.844 42 H 0.155 0.845 43 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -0.012 -5.893 21.465 22.260 hybrid contribution -0.213 1.278 -1.522 1.999 sum -0.225 -4.615 19.943 20.472 Atomic orbital electron populations 1.22070 0.94387 1.01904 1.03038 1.22033 0.94738 0.96962 0.83820 0.90018 1.21247 0.93534 0.91645 0.87050 0.91471 1.42322 1.80712 1.09242 1.03147 1.19142 1.39576 0.95279 0.83750 0.90968 1.24770 1.01865 0.95624 0.98225 1.69651 1.52094 1.03111 1.32828 0.86249 0.77872 0.77335 0.84580 1.21127 1.21650 1.21150 1.23607 1.01534 1.02060 0.92428 1.22730 0.94853 0.88112 0.97959 1.48488 1.51202 1.28428 1.04580 1.17380 0.81490 0.83864 0.81146 1.90761 1.37709 1.28802 1.82912 1.21176 0.99133 0.95431 0.95285 1.24600 0.95479 0.91644 0.99526 1.73045 1.06271 1.31459 0.96590 1.73593 1.09983 1.08272 1.12815 1.20340 0.98902 0.91897 0.95691 1.20792 0.98993 0.94886 0.95406 1.21107 0.97516 0.93524 0.99495 1.21241 0.95906 1.00988 0.93033 1.21398 0.98083 0.93024 0.99035 1.18637 0.96562 0.95683 0.92752 0.91737 0.90829 0.92888 0.77956 0.93250 0.90438 0.90100 0.90989 0.90819 0.80162 0.83657 0.84406 0.84515 0.82830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.40 9.10 37.16 0.34 -2.07 16 2 C 0.13 2.08 3.23 -66.94 -0.22 1.86 16 3 H 0.08 1.50 7.69 -51.93 -0.40 1.10 16 4 C 0.18 3.16 3.12 -66.09 -0.21 2.95 16 5 H 0.07 1.19 7.82 -51.93 -0.41 0.79 16 6 N -0.71 -16.53 5.25 -51.65 -0.27 -16.80 16 7 C -0.25 -6.39 9.98 -15.06 -0.15 -6.54 16 8 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 9 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 10 N -0.93 -26.94 13.06 55.49 0.72 -26.22 16 11 Si 0.91 21.44 29.55 -169.99 -5.02 16.42 16 12 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 13 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 14 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 15 C -0.15 -2.37 6.77 -24.58 -0.17 -2.53 16 16 C 0.09 1.06 5.16 -2.53 -0.01 1.04 16 17 N -0.59 -8.53 3.06 -164.10 -0.50 -9.03 16 18 C 0.57 8.51 7.14 -12.32 -0.09 8.42 16 19 O -0.52 -8.90 13.64 5.33 0.07 -8.83 16 20 C -0.09 -1.26 5.56 -104.31 -0.58 -1.84 16 21 C 0.04 0.47 9.24 -16.97 -0.16 0.32 16 22 N -0.22 -2.94 11.47 30.73 0.35 -2.59 16 23 N -0.19 -2.55 11.52 32.22 0.37 -2.18 16 24 C 0.06 0.74 6.69 -84.87 -0.57 0.17 16 25 C -0.08 -0.71 10.01 -39.46 -0.39 -1.10 16 26 C -0.10 -0.69 9.94 -39.92 -0.40 -1.09 16 27 C -0.09 -0.77 9.96 -39.84 -0.40 -1.17 16 28 C -0.10 -1.12 9.21 -39.66 -0.37 -1.48 16 29 C -0.03 -0.35 5.77 -106.50 -0.61 -0.96 16 30 H 0.06 1.03 6.76 -51.93 -0.35 0.68 16 31 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.39 9.68 7.51 -40.82 -0.31 9.37 16 34 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 35 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 36 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 37 H 0.07 0.81 6.62 -51.93 -0.34 0.46 16 38 H 0.07 0.73 7.31 -51.93 -0.38 0.35 16 39 H 0.18 1.74 5.57 -52.49 -0.29 1.45 16 40 H 0.15 0.96 8.06 -52.49 -0.42 0.54 16 41 H 0.14 0.54 8.06 -52.49 -0.42 0.12 16 42 H 0.14 0.80 8.06 -52.49 -0.42 0.37 16 43 H 0.15 1.95 5.97 -52.49 -0.31 1.64 16 LS Contribution 353.41 15.07 5.33 5.33 Total: -1.00 -30.98 353.41 -8.32 -39.30 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: -5.30 Total: 8.93 kcal Atomic # 6 Polarization: -0.25 SS G_CDS: -4.07 Total: -4.32 kcal Atomic # 7 Polarization: -57.50 SS G_CDS: 0.67 Total: -56.82 kcal Atomic # 8 Polarization: -8.90 SS G_CDS: 0.07 Total: -8.83 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -30.98 -8.32 -39.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987058536.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.054 kcal (2) G-P(sol) polarization free energy of solvation -30.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.299 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds