Wall clock time and date at job start Tue Mar 31 2020 14:44:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08993 * 110.00107 * 2 1 4 4 C 1.54338 * 109.98966 * 238.95894 * 2 1 3 5 5 H 1.08999 * 110.52083 * 336.97791 * 4 2 1 6 6 N 1.46501 * 110.84940 * 100.20376 * 4 2 1 7 7 C 1.36936 * 119.99962 * 200.14849 * 6 4 2 8 8 H 1.07997 * 119.99876 * 359.97438 * 7 6 4 9 9 C 1.38809 * 119.99880 * 179.97438 * 7 6 4 10 10 N 1.31620 * 120.00098 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 119.99854 * 179.97438 * 9 7 6 12 12 H 1.48495 * 109.47319 * 60.00028 * 11 9 7 13 13 H 1.48503 * 109.47115 * 180.02562 * 11 9 7 14 14 H 1.48501 * 109.47316 * 299.99501 * 11 9 7 15 15 C 1.55156 * 103.02111 * 218.66563 * 4 2 1 16 16 C 1.54914 * 101.57905 * 35.30967 * 15 4 2 17 17 N 1.47029 * 109.88226 * 121.09697 * 2 1 3 18 18 C 1.34772 * 125.64424 * 298.39537 * 17 2 1 19 19 O 1.21544 * 120.00163 * 3.73041 * 18 17 2 20 20 C 1.47873 * 120.00005 * 183.73343 * 18 17 2 21 21 C 1.38948 * 121.41965 * 323.92936 * 20 18 17 22 22 N 1.32579 * 120.33295 * 179.97438 * 21 20 18 23 23 N 1.28374 * 123.43954 * 0.02562 * 22 21 20 24 24 C 1.33468 * 121.85189 * 359.97438 * 23 22 21 25 25 C 1.40590 * 121.74571 * 179.97438 * 24 23 22 26 26 C 1.36115 * 119.61008 * 180.02562 * 25 24 23 27 27 C 1.39372 * 121.13297 * 0.27656 * 26 25 24 28 28 C 1.36342 * 120.88311 * 359.43089 * 27 26 25 29 29 C 1.39864 * 119.49893 * 0.55966 * 28 27 26 30 30 H 1.08999 * 109.46714 * 300.36092 * 1 2 3 31 31 H 1.09000 * 109.46517 * 60.35818 * 1 2 3 32 32 H 1.08993 * 109.46988 * 180.35881 * 1 2 3 33 33 H 0.97000 * 120.00305 * 20.13742 * 6 4 2 34 34 H 0.97003 * 120.00087 * 179.97438 * 10 9 7 35 35 H 1.08998 * 111.00897 * 277.23387 * 15 4 2 36 36 H 1.09001 * 111.03935 * 153.39297 * 15 4 2 37 37 H 1.08999 * 110.36170 * 204.15006 * 16 15 4 38 38 H 1.09004 * 110.36850 * 81.83274 * 16 15 4 39 39 H 1.07997 * 119.83431 * 359.97438 * 21 20 18 40 40 H 1.07999 * 120.19642 * 359.97438 * 25 24 23 41 41 H 1.08000 * 119.43455 * 179.97438 * 26 25 24 42 42 H 1.08000 * 119.56183 * 179.70171 * 27 26 25 43 43 H 1.07997 * 120.25263 * 180.26035 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0576 -0.7479 -1.2427 5 1 1.3053 -1.4407 -1.6197 6 7 2.4638 0.1967 -2.2863 7 6 2.5655 -0.2215 -3.5863 8 1 2.3467 -1.2476 -3.8422 9 6 2.9499 0.6736 -4.5752 10 7 3.2160 1.9244 -4.2634 11 14 3.0893 0.1031 -6.3484 12 1 1.7710 -0.3992 -6.8120 13 1 3.5141 1.2411 -7.2026 14 1 4.0944 -0.9862 -6.4404 15 6 3.2864 -1.5184 -0.6915 16 6 2.8098 -1.8826 0.7369 17 7 2.0301 -0.7141 1.1840 18 6 1.8074 -0.3621 2.4657 19 8 1.0863 0.5827 2.7199 20 6 2.4404 -1.1252 3.5627 21 6 2.6183 -2.5008 3.4795 22 7 3.1890 -3.1636 4.4759 23 7 3.6040 -2.6020 5.5531 24 6 3.4893 -1.2871 5.7511 25 6 3.9441 -0.6744 6.9320 26 6 3.8048 0.6705 7.0886 27 6 3.2126 1.4536 6.0994 28 6 2.7653 0.8950 4.9389 29 6 2.8925 -0.4842 4.7447 30 1 -0.3633 0.5194 0.8867 31 1 -0.3632 0.5083 -0.8932 32 1 -0.3633 -1.0276 0.0064 33 1 2.6605 1.1183 -2.0565 34 1 3.4850 2.5498 -4.9544 35 1 4.1670 -0.8770 -0.6579 36 1 3.4813 -2.4157 -1.2788 37 1 3.6655 -2.0412 1.3932 38 1 2.1801 -2.7719 0.7116 39 1 2.2901 -3.0327 2.5988 40 1 4.4006 -1.2675 7.7106 41 1 4.1548 1.1381 7.9970 42 1 3.1106 2.5179 6.2523 43 1 2.3117 1.5121 4.1774 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987058536.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:16 Heat of formation + Delta-G solvation = 50.866615 kcal Electronic energy + Delta-G solvation = -27219.973645 eV Core-core repulsion = 23458.523324 eV Total energy + Delta-G solvation = -3761.450321 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.72732 -41.19805 -39.10258 -38.79722 -36.03293 -35.04263 -33.38359 -32.77223 -32.36007 -31.54374 -30.68956 -27.17894 -26.90206 -25.59042 -24.94098 -24.36497 -23.38239 -21.72698 -20.67728 -19.79335 -19.50637 -19.15945 -18.23018 -17.71587 -16.91307 -16.68121 -16.40350 -16.13491 -16.07922 -15.69445 -15.45150 -15.20125 -15.00140 -14.70243 -14.39872 -14.24638 -13.74500 -13.55379 -13.45327 -13.34833 -13.17098 -12.93392 -12.86989 -12.66719 -12.54726 -12.23665 -12.15640 -12.04209 -11.92590 -11.72319 -11.64715 -11.53708 -10.92169 -10.70645 -10.49539 -9.88277 -9.50939 -9.03894 -7.94221 -5.24268 -1.44340 -0.52929 0.45786 1.35152 1.49707 1.52249 1.55655 1.58555 1.80516 2.57068 2.74832 2.78531 2.98509 3.13256 3.25491 3.38098 3.60748 3.64239 3.66321 3.81803 3.94458 4.06427 4.12185 4.14050 4.24727 4.33457 4.33653 4.43627 4.46259 4.58629 4.62105 4.72238 4.85836 4.88939 4.97929 4.99679 5.17133 5.18633 5.20637 5.23439 5.30134 5.40417 5.54827 5.64745 6.24124 6.27225 6.76932 7.32897 7.35349 8.04099 8.27471 9.28992 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.022037 B = 0.002800 C = 0.002699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.291628 B = 9998.594792 C =10372.722584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.135 3.865 3 H 0.053 0.947 4 C 0.172 3.828 5 H 0.076 0.924 6 N -0.728 5.728 7 C -0.237 4.237 8 H 0.084 0.916 9 C -0.074 4.074 10 N -0.971 5.971 11 Si 0.972 3.028 12 H -0.277 1.277 13 H -0.301 1.301 14 H -0.276 1.276 15 C -0.147 4.147 16 C 0.093 3.907 17 N -0.594 5.594 18 C 0.577 3.423 19 O -0.553 6.553 20 C -0.115 4.115 21 C 0.048 3.952 22 N -0.242 5.242 23 N -0.203 5.203 24 C 0.046 3.954 25 C -0.081 4.081 26 C -0.083 4.083 27 C -0.069 4.069 28 C -0.133 4.133 29 C -0.039 4.039 30 H 0.056 0.944 31 H 0.062 0.938 32 H 0.071 0.929 33 H 0.371 0.629 34 H 0.250 0.750 35 H 0.054 0.946 36 H 0.095 0.905 37 H 0.087 0.913 38 H 0.109 0.891 39 H 0.203 0.797 40 H 0.170 0.830 41 H 0.183 0.817 42 H 0.166 0.834 43 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.350 -6.512 23.103 24.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.031 3.969 3 H 0.071 0.929 4 C 0.062 3.938 5 H 0.094 0.906 6 N -0.368 5.368 7 C -0.368 4.368 8 H 0.102 0.898 9 C -0.266 4.266 10 N -0.621 5.621 11 Si 0.801 3.199 12 H -0.203 1.203 13 H -0.228 1.228 14 H -0.202 1.202 15 C -0.188 4.188 16 C -0.029 4.029 17 N -0.326 5.326 18 C 0.365 3.635 19 O -0.432 6.432 20 C -0.130 4.130 21 C -0.104 4.104 22 N -0.094 5.094 23 N -0.057 5.057 24 C -0.084 4.084 25 C -0.101 4.101 26 C -0.103 4.103 27 C -0.089 4.089 28 C -0.152 4.152 29 C -0.048 4.048 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.090 0.910 33 H 0.204 0.796 34 H 0.059 0.941 35 H 0.073 0.927 36 H 0.113 0.887 37 H 0.105 0.895 38 H 0.127 0.873 39 H 0.220 0.780 40 H 0.188 0.812 41 H 0.200 0.800 42 H 0.184 0.816 43 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 0.404 -7.545 23.627 24.805 hybrid contribution -0.331 1.829 -1.973 2.710 sum 0.072 -5.716 21.654 22.396 Atomic orbital electron populations 1.21968 0.93580 1.02804 1.02078 1.21731 0.95248 0.95569 0.84311 0.92900 1.21437 0.94836 0.91114 0.86375 0.90579 1.42491 1.81101 1.09496 1.03673 1.19571 1.36979 0.95507 0.84777 0.89767 1.25553 1.03128 0.95863 1.02094 1.69818 1.54525 1.04311 1.33460 0.85237 0.78096 0.76539 0.80027 1.20305 1.22786 1.20223 1.23412 0.99196 1.01652 0.94513 1.22868 0.95839 0.88260 0.95940 1.48452 1.51338 1.28849 1.03995 1.17604 0.80986 0.83485 0.81378 1.90740 1.39005 1.30113 1.83359 1.21029 1.00798 0.95933 0.95236 1.24823 0.94628 0.91105 0.99831 1.73001 1.07426 1.31881 0.97069 1.73490 1.10081 1.09052 1.13056 1.20706 0.99495 0.91451 0.96760 1.21211 0.98359 0.95913 0.94663 1.21583 0.95659 0.92730 1.00313 1.21692 0.92958 1.02633 0.91582 1.21345 1.00782 0.92616 1.00438 1.18869 0.96660 0.96414 0.92887 0.92503 0.91918 0.90985 0.79647 0.94119 0.92668 0.88669 0.89459 0.87284 0.78038 0.81216 0.79975 0.81617 0.84904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.53 9.10 71.98 0.66 -3.88 16 2 C 0.14 4.49 3.23 45.35 0.15 4.64 16 3 H 0.05 2.06 7.69 -2.39 -0.02 2.05 16 4 C 0.17 6.09 3.12 46.18 0.14 6.23 16 5 H 0.08 2.59 7.82 -2.39 -0.02 2.57 16 6 N -0.73 -34.39 5.25 -317.31 -1.67 -36.06 16 7 C -0.24 -12.28 9.98 84.03 0.84 -11.44 16 8 H 0.08 4.08 7.83 -2.91 -0.02 4.06 16 9 C -0.07 -4.09 5.50 84.86 0.47 -3.62 16 10 N -0.97 -58.06 13.06 21.65 0.28 -57.78 16 11 Si 0.97 44.46 29.55 68.60 2.03 46.49 16 12 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 13 H -0.30 -14.17 7.11 99.48 0.71 -13.47 16 14 H -0.28 -12.09 7.11 99.48 0.71 -11.39 16 15 C -0.15 -4.33 6.77 31.99 0.22 -4.11 16 16 C 0.09 2.09 5.16 86.86 0.45 2.54 16 17 N -0.59 -16.83 3.06 -791.37 -2.42 -19.26 16 18 C 0.58 17.26 7.14 86.80 0.62 17.88 16 19 O -0.55 -19.46 13.64 -3.85 -0.05 -19.51 16 20 C -0.11 -3.01 5.56 -19.66 -0.11 -3.12 16 21 C 0.05 1.10 9.24 84.75 0.78 1.88 16 22 N -0.24 -6.18 11.47 -56.69 -0.65 -6.83 16 23 N -0.20 -5.17 11.52 -51.99 -0.60 -5.77 16 24 C 0.05 1.05 6.69 40.38 0.27 1.32 16 25 C -0.08 -1.19 10.01 22.35 0.22 -0.96 16 26 C -0.08 -0.85 9.94 22.05 0.22 -0.63 16 27 C -0.07 -0.98 9.96 22.10 0.22 -0.76 16 28 C -0.13 -3.02 9.21 22.22 0.20 -2.82 16 29 C -0.04 -0.99 5.77 -21.08 -0.12 -1.11 16 30 H 0.06 1.85 6.76 -2.39 -0.02 1.83 16 31 H 0.06 2.05 8.14 -2.39 -0.02 2.04 16 32 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.37 19.49 7.51 -92.71 -0.70 18.79 16 34 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 35 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 36 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 37 H 0.09 1.77 6.62 -2.39 -0.02 1.76 16 38 H 0.11 1.76 7.31 -2.39 -0.02 1.75 16 39 H 0.20 3.43 5.57 -2.91 -0.02 3.41 16 40 H 0.17 1.61 8.06 -2.91 -0.02 1.59 16 41 H 0.18 0.33 8.06 -2.91 -0.02 0.31 16 42 H 0.17 1.34 8.06 -2.91 -0.02 1.32 16 43 H 0.13 3.55 5.97 -2.91 -0.02 3.54 16 Total: -1.00 -70.31 353.41 2.51 -67.81 By element: Atomic # 1 Polarization: 28.50 SS G_CDS: 0.36 Total: 28.86 kcal Atomic # 6 Polarization: -3.18 SS G_CDS: 5.23 Total: 2.04 kcal Atomic # 7 Polarization: -120.64 SS G_CDS: -5.06 Total: -125.69 kcal Atomic # 8 Polarization: -19.46 SS G_CDS: -0.05 Total: -19.51 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal Total: -70.31 2.51 -67.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987058536.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.674 kcal (2) G-P(sol) polarization free energy of solvation -70.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.808 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds