Wall clock time and date at job start Tue Mar 31 2020 14:44:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08997 * 110.00147 * 2 1 4 4 C 1.54324 * 109.77374 * 121.15655 * 2 1 3 5 5 H 1.08996 * 111.07178 * 23.39636 * 4 2 1 6 6 N 1.46496 * 110.58722 * 260.14699 * 4 2 1 7 7 C 1.36937 * 120.00173 * 160.19606 * 6 4 2 8 8 H 1.08007 * 119.99781 * 359.97438 * 7 6 4 9 9 C 1.38812 * 120.00731 * 179.97438 * 7 6 4 10 10 N 1.31625 * 119.99753 * 359.97438 * 9 7 6 11 11 Si 1.86802 * 120.00249 * 179.97438 * 9 7 6 12 12 H 1.48497 * 109.46982 * 60.00364 * 11 9 7 13 13 H 1.48498 * 109.46842 * 179.97438 * 11 9 7 14 14 H 1.48498 * 109.47075 * 299.99795 * 11 9 7 15 15 C 1.55157 * 102.86313 * 141.88483 * 4 2 1 16 16 C 1.54909 * 101.58143 * 324.30507 * 15 4 2 17 17 N 1.47015 * 109.88625 * 238.90369 * 2 1 3 18 18 C 1.34783 * 125.64907 * 61.67695 * 17 2 1 19 19 O 1.21547 * 119.99378 * 355.69433 * 18 17 2 20 20 C 1.47865 * 120.00359 * 175.69400 * 18 17 2 21 21 C 1.38954 * 121.42092 * 36.05290 * 20 18 17 22 22 N 1.32580 * 120.34043 * 179.75484 * 21 20 18 23 23 N 1.28384 * 123.42920 * 0.52331 * 22 21 20 24 24 C 1.33460 * 121.85469 * 359.74373 * 23 22 21 25 25 C 1.40585 * 121.73360 * 179.97438 * 24 23 22 26 26 C 1.36112 * 119.60992 * 180.02562 * 25 24 23 27 27 C 1.39371 * 121.12789 * 359.97438 * 26 25 24 28 28 C 1.36340 * 120.89265 * 0.02830 * 27 26 25 29 29 C 1.39859 * 119.49398 * 359.95462 * 28 27 26 30 30 H 1.08999 * 109.47318 * 179.64097 * 1 2 3 31 31 H 1.09002 * 109.47547 * 299.64282 * 1 2 3 32 32 H 1.09000 * 109.47114 * 59.64237 * 1 2 3 33 33 H 0.97001 * 120.00361 * 340.19031 * 6 4 2 34 34 H 0.96989 * 119.99830 * 179.97438 * 10 9 7 35 35 H 1.09000 * 110.99959 * 206.22672 * 15 4 2 36 36 H 1.09002 * 111.00146 * 82.37768 * 15 4 2 37 37 H 1.09002 * 110.36579 * 278.17304 * 16 15 4 38 38 H 1.09000 * 110.36531 * 155.84795 * 16 15 4 39 39 H 1.07997 * 119.83115 * 359.97299 * 21 20 18 40 40 H 1.07999 * 120.19688 * 0.02562 * 25 24 23 41 41 H 1.08000 * 119.43463 * 180.02562 * 26 25 24 42 42 H 1.08010 * 119.55575 * 179.97438 * 27 26 25 43 43 H 1.07990 * 120.25354 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9027 1.0242 0.0000 4 6 2.0520 -0.7514 1.2428 5 1 1.3062 -1.4512 1.6196 6 7 2.4471 0.1952 2.2887 7 6 2.5495 -0.2239 3.5884 8 1 2.3385 -1.2523 3.8423 9 6 2.9244 0.6728 4.5795 10 7 3.1820 1.9259 4.2700 11 14 3.0632 0.1011 6.3524 12 1 4.0762 -0.9808 6.4457 13 1 3.4772 1.2412 7.2091 14 1 1.7474 -0.4117 6.8117 15 6 3.2888 -1.5102 0.6933 16 6 2.8190 -1.8763 -0.7367 17 7 2.0300 -0.7140 -1.1838 18 6 1.8086 -0.3612 -2.4657 19 8 1.0802 0.5779 -2.7203 20 6 2.4516 -1.1167 -3.5621 21 6 2.6414 -2.4908 -3.4810 22 7 3.2161 -3.1476 -4.4790 23 7 3.6338 -2.5795 -5.5519 24 6 3.5131 -1.2645 -5.7455 25 6 3.9720 -0.6450 -6.9211 26 6 3.8272 0.6999 -7.0730 27 6 3.2302 1.4768 -6.0819 28 6 2.7735 0.9106 -4.9288 29 6 2.9057 -0.4688 -4.7396 30 1 -0.3634 -1.0276 -0.0064 31 1 -0.3634 0.5083 0.8932 32 1 -0.3633 0.5194 -0.8868 33 1 2.6363 1.1188 2.0607 34 1 3.4436 2.5525 4.9625 35 1 3.4896 -2.4066 1.2802 36 1 4.1638 -0.8609 0.6629 37 1 2.1970 -2.7711 -0.7142 38 1 3.6776 -2.0264 -1.3912 39 1 2.3158 -3.0271 -2.6020 40 1 4.4366 -1.2326 -7.6990 41 1 4.1804 1.1728 -7.9775 42 1 3.1287 2.5421 -6.2289 43 1 2.3129 1.5225 -4.1675 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987058538.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:20 Heat of formation + Delta-G solvation = 70.834997 kcal Electronic energy + Delta-G solvation = -27221.451321 eV Core-core repulsion = 23460.866894 eV Total energy + Delta-G solvation = -3760.584427 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.80949 -40.03368 -38.19078 -37.63093 -34.46012 -33.92839 -31.94880 -31.83715 -31.08528 -30.55302 -29.21457 -26.15142 -25.46206 -24.63142 -23.63240 -23.08278 -22.30905 -20.37643 -19.53032 -18.94908 -18.54299 -17.39176 -17.18424 -16.44735 -16.00524 -15.45544 -15.33605 -15.15156 -14.70196 -14.61075 -14.31802 -13.78032 -13.62511 -13.52806 -13.09839 -12.98563 -12.71322 -12.66773 -12.36626 -12.16649 -12.02520 -11.72075 -11.31141 -11.16628 -11.10748 -11.02053 -10.87563 -10.70352 -10.58058 -10.36808 -10.11735 -9.82612 -9.71381 -9.63929 -9.02038 -8.75814 -8.63162 -7.11963 -5.88494 -3.19661 -0.55343 0.29375 1.28095 2.35704 2.59456 2.80425 3.37272 3.42230 3.43160 3.58682 3.63786 3.98600 4.00738 4.11358 4.43572 4.47969 4.54319 4.74320 4.79972 4.84300 5.00666 5.14351 5.19650 5.25042 5.31929 5.40581 5.46235 5.54399 5.60533 5.63377 5.75984 5.79708 5.90045 5.94125 6.01573 6.01620 6.17031 6.30857 6.32912 6.45790 6.48998 6.54221 6.80130 7.40912 7.58747 7.92861 8.27580 8.28478 9.40192 9.92984 10.27571 11.33478 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.022013 B = 0.002801 C = 0.002700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.694556 B = 9992.461464 C =10366.166254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.128 3.872 3 H 0.082 0.918 4 C 0.177 3.823 5 H 0.068 0.932 6 N -0.714 5.714 7 C -0.247 4.247 8 H 0.072 0.928 9 C -0.008 4.008 10 N -0.930 5.930 11 Si 0.909 3.091 12 H -0.285 1.285 13 H -0.291 1.291 14 H -0.285 1.285 15 C -0.156 4.156 16 C 0.086 3.914 17 N -0.595 5.595 18 C 0.575 3.425 19 O -0.524 6.524 20 C -0.095 4.095 21 C 0.039 3.961 22 N -0.221 5.221 23 N -0.192 5.192 24 C 0.061 3.939 25 C -0.080 4.080 26 C -0.096 4.096 27 C -0.092 4.092 28 C -0.097 4.097 29 C -0.027 4.027 30 H 0.052 0.948 31 H 0.073 0.927 32 H 0.064 0.936 33 H 0.386 0.614 34 H 0.258 0.742 35 H 0.080 0.920 36 H 0.077 0.923 37 H 0.074 0.926 38 H 0.072 0.928 39 H 0.182 0.818 40 H 0.146 0.854 41 H 0.138 0.862 42 H 0.137 0.863 43 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.078 -4.887 -20.961 21.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.025 3.975 3 H 0.100 0.900 4 C 0.065 3.935 5 H 0.086 0.914 6 N -0.354 5.354 7 C -0.378 4.378 8 H 0.090 0.910 9 C -0.205 4.205 10 N -0.577 5.577 11 Si 0.740 3.260 12 H -0.212 1.212 13 H -0.216 1.216 14 H -0.211 1.211 15 C -0.197 4.197 16 C -0.036 4.036 17 N -0.327 5.327 18 C 0.361 3.639 19 O -0.402 6.402 20 C -0.110 4.110 21 C -0.113 4.113 22 N -0.074 5.074 23 N -0.047 5.047 24 C -0.068 4.068 25 C -0.101 4.101 26 C -0.116 4.116 27 C -0.112 4.112 28 C -0.115 4.115 29 C -0.036 4.036 30 H 0.071 0.929 31 H 0.092 0.908 32 H 0.083 0.917 33 H 0.220 0.780 34 H 0.067 0.933 35 H 0.099 0.901 36 H 0.096 0.904 37 H 0.092 0.908 38 H 0.090 0.910 39 H 0.198 0.802 40 H 0.163 0.837 41 H 0.156 0.844 42 H 0.155 0.845 43 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 0.136 -5.836 -21.456 22.236 hybrid contribution -0.219 1.275 1.527 2.002 sum -0.083 -4.560 -19.929 20.444 Atomic orbital electron populations 1.22073 0.94399 1.01908 1.03032 1.22025 0.94781 0.96895 0.83801 0.90000 1.21261 0.93544 0.91671 0.86996 0.91394 1.42334 1.81144 1.08885 1.03083 1.19145 1.39787 0.95087 0.83738 0.90972 1.24772 1.01885 0.95605 0.98223 1.69649 1.52363 1.02905 1.32770 0.86248 0.77877 0.77334 0.84579 1.21150 1.21650 1.21125 1.23616 1.01572 1.02087 0.92416 1.22730 0.94710 0.88266 0.97944 1.48489 1.50931 1.28716 1.04582 1.17382 0.81590 0.83763 0.81146 1.90762 1.37465 1.29044 1.82899 1.21177 0.99089 0.95438 0.95320 1.24604 0.95452 0.91722 0.99474 1.73051 1.06292 1.31395 0.96625 1.73592 1.10066 1.08075 1.12934 1.20336 0.98843 0.91946 0.95703 1.20791 0.98985 0.94830 0.95465 1.21106 0.97525 0.93561 0.99452 1.21242 0.95873 1.00993 0.93054 1.21389 0.98100 0.92963 0.99085 1.18637 0.96542 0.95672 0.92776 0.92891 0.90830 0.91748 0.77958 0.93250 0.90108 0.90440 0.90805 0.91007 0.80160 0.83655 0.84404 0.84514 0.82850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.41 9.10 37.15 0.34 -2.07 16 2 C 0.13 2.09 3.23 -66.96 -0.22 1.87 16 3 H 0.08 1.50 7.68 -51.93 -0.40 1.10 16 4 C 0.18 3.16 3.11 -66.10 -0.21 2.95 16 5 H 0.07 1.21 7.84 -51.93 -0.41 0.80 16 6 N -0.71 -16.52 5.25 -51.65 -0.27 -16.79 16 7 C -0.25 -6.39 9.98 -15.06 -0.15 -6.54 16 8 H 0.07 1.79 7.83 -52.48 -0.41 1.38 16 9 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 10 N -0.93 -26.94 13.06 55.49 0.72 -26.22 16 11 Si 0.91 21.44 29.55 -169.99 -5.02 16.42 16 12 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 13 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 14 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 15 C -0.16 -2.38 6.76 -24.58 -0.17 -2.54 16 16 C 0.09 1.06 5.16 -2.53 -0.01 1.04 16 17 N -0.59 -8.53 3.07 -164.12 -0.50 -9.03 16 18 C 0.57 8.51 7.14 -12.32 -0.09 8.42 16 19 O -0.52 -8.90 13.65 5.32 0.07 -8.83 16 20 C -0.09 -1.26 5.56 -104.31 -0.58 -1.84 16 21 C 0.04 0.47 9.24 -16.96 -0.16 0.32 16 22 N -0.22 -2.94 11.47 30.73 0.35 -2.59 16 23 N -0.19 -2.55 11.52 32.21 0.37 -2.18 16 24 C 0.06 0.74 6.69 -84.87 -0.57 0.17 16 25 C -0.08 -0.71 10.01 -39.46 -0.39 -1.10 16 26 C -0.10 -0.69 9.94 -39.92 -0.40 -1.08 16 27 C -0.09 -0.77 9.96 -39.84 -0.40 -1.17 16 28 C -0.10 -1.11 9.21 -39.66 -0.37 -1.48 16 29 C -0.03 -0.35 5.77 -106.50 -0.61 -0.96 16 30 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.06 1.03 6.75 -51.93 -0.35 0.68 16 33 H 0.39 9.67 7.50 -40.82 -0.31 9.37 16 34 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 35 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 37 H 0.07 0.74 7.31 -51.93 -0.38 0.36 16 38 H 0.07 0.80 6.62 -51.93 -0.34 0.46 16 39 H 0.18 1.75 5.57 -52.49 -0.29 1.45 16 40 H 0.15 0.96 8.06 -52.49 -0.42 0.54 16 41 H 0.14 0.54 8.06 -52.49 -0.42 0.12 16 42 H 0.14 0.80 8.06 -52.48 -0.42 0.37 16 43 H 0.15 1.95 5.98 -52.49 -0.31 1.63 16 LS Contribution 353.39 15.07 5.33 5.33 Total: -1.00 -30.97 353.39 -8.32 -39.29 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: -5.30 Total: 8.94 kcal Atomic # 6 Polarization: -0.26 SS G_CDS: -4.07 Total: -4.33 kcal Atomic # 7 Polarization: -57.49 SS G_CDS: 0.67 Total: -56.81 kcal Atomic # 8 Polarization: -8.90 SS G_CDS: 0.07 Total: -8.83 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -30.97 -8.32 -39.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987058538.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.128 kcal (2) G-P(sol) polarization free energy of solvation -30.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.293 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds