Wall clock time and date at job start Tue Mar 31 2020 14:43:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.99765 * 2 1 4 4 C 1.54315 * 109.88675 * 121.10011 * 2 1 3 5 5 H 1.09004 * 110.72052 * 23.25076 * 4 2 1 6 6 N 1.46491 * 110.72533 * 259.97460 * 4 2 1 7 7 C 1.36939 * 120.00320 * 154.99814 * 6 4 2 8 8 H 1.07997 * 119.99871 * 359.97438 * 7 6 4 9 9 C 1.38812 * 119.99807 * 180.02562 * 7 6 4 10 10 N 1.31615 * 120.00570 * 359.97438 * 9 7 6 11 11 Si 1.86807 * 119.99781 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.47074 * 89.99830 * 11 9 7 13 13 H 1.48497 * 109.46994 * 210.00084 * 11 9 7 14 14 H 1.48498 * 109.46886 * 329.99636 * 11 9 7 15 15 C 1.55159 * 102.94291 * 141.60707 * 4 2 1 16 16 C 1.55132 * 101.48684 * 324.33773 * 15 4 2 17 17 N 1.47025 * 109.87892 * 238.91276 * 2 1 3 18 18 C 1.34777 * 125.65000 * 61.60590 * 17 2 1 19 19 O 1.21493 * 119.99885 * 359.97438 * 18 17 2 20 20 C 1.48374 * 120.00079 * 180.27297 * 18 17 2 21 21 C 1.40215 * 119.22079 * 179.45179 * 20 18 17 22 22 C 1.36646 * 119.90462 * 179.71867 * 21 20 18 23 23 C 1.40556 * 118.10803 * 0.53976 * 22 21 20 24 24 C 1.40398 * 122.05647 * 179.70139 * 23 22 21 25 25 N 1.31248 * 119.87293 * 180.02562 * 24 23 22 26 26 C 1.32597 * 122.68128 * 0.02562 * 25 24 23 27 27 C 1.36097 * 121.99703 * 359.97438 * 26 25 24 28 28 C 1.40947 * 118.77060 * 0.02562 * 27 26 25 29 29 N 1.31982 * 119.21727 * 359.72192 * 20 18 17 30 30 H 1.08994 * 109.47386 * 179.63806 * 1 2 3 31 31 H 1.09007 * 109.47215 * 299.63587 * 1 2 3 32 32 H 1.09006 * 109.47748 * 59.63282 * 1 2 3 33 33 H 0.97003 * 120.00152 * 334.99775 * 6 4 2 34 34 H 0.96995 * 120.00197 * 180.02562 * 10 9 7 35 35 H 1.09005 * 111.00089 * 82.57647 * 15 4 2 36 36 H 1.08999 * 111.00459 * 206.39017 * 15 4 2 37 37 H 1.09001 * 110.49739 * 278.45195 * 16 15 4 38 38 H 1.09000 * 110.34355 * 156.05515 * 16 15 4 39 39 H 1.08003 * 120.04464 * 0.02562 * 21 20 18 40 40 H 1.07996 * 120.94098 * 180.26459 * 22 21 20 41 41 H 1.08002 * 120.06405 * 0.02562 * 24 23 22 42 42 H 1.08000 * 119.00329 * 180.02562 * 26 25 24 43 43 H 1.08005 * 120.61890 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0549 -0.7496 1.2425 5 1 1.3052 -1.4461 1.6180 6 7 2.4555 0.1958 2.2874 7 6 2.4583 -0.1949 3.5999 8 1 2.1648 -1.1999 3.8647 9 6 2.8375 0.7012 4.5899 10 7 3.1947 1.9261 4.2673 11 14 2.8420 0.1679 6.3803 12 1 4.1724 -0.3938 6.7261 13 1 2.5593 1.3404 7.2466 14 1 1.7978 -0.8666 6.5912 15 6 3.2876 -1.5143 0.6921 16 6 2.8099 -1.8824 -0.7372 17 7 2.0299 -0.7139 -1.1841 18 6 1.8072 -0.3617 -2.4658 19 8 1.1415 0.6227 -2.7184 20 6 2.3695 -1.1800 -3.5684 21 6 2.1180 -0.8051 -4.8959 22 6 2.6339 -1.5453 -5.9222 23 6 3.3999 -2.6792 -5.6011 24 6 3.9637 -3.5018 -6.5893 25 7 4.6714 -4.5508 -6.2410 26 6 4.8859 -4.8816 -4.9750 27 6 4.3833 -4.1499 -3.9434 28 6 3.6116 -3.0071 -4.2350 29 7 3.0901 -2.2465 -3.2764 30 1 -0.3634 -1.0276 -0.0065 31 1 -0.3634 0.5082 0.8933 32 1 -0.3635 0.5195 -0.8867 33 1 2.7188 1.0986 2.0496 34 1 3.4600 2.5521 4.9591 35 1 4.1654 -0.8688 0.6601 36 1 3.4856 -2.4108 1.2796 37 1 2.1801 -2.7717 -0.7119 38 1 3.6654 -2.0409 -1.3937 39 1 1.5216 0.0702 -5.1069 40 1 2.4542 -1.2694 -6.9508 41 1 3.8154 -3.2719 -7.6341 42 1 5.4781 -5.7578 -4.7558 43 1 4.5722 -4.4395 -2.9202 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987064697.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:43:28 Heat of formation + Delta-G solvation = 61.959622 kcal Electronic energy + Delta-G solvation = -26988.346756 eV Core-core repulsion = 23227.377463 eV Total energy + Delta-G solvation = -3760.969293 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.65914 -40.03928 -38.31421 -37.30860 -34.38189 -33.90807 -32.31263 -31.35188 -30.83078 -30.80685 -29.12009 -26.06614 -25.19107 -24.60068 -23.19226 -23.04007 -22.45457 -20.52948 -19.57197 -18.85920 -17.71023 -17.50192 -17.22235 -16.26848 -16.07801 -15.54185 -15.21076 -14.94814 -14.68674 -14.62467 -14.20776 -13.79783 -13.67514 -13.39465 -13.29883 -13.10320 -12.96500 -12.74704 -12.50839 -12.09822 -11.85977 -11.57625 -11.20802 -11.13045 -11.02804 -10.86444 -10.56911 -10.42902 -10.21922 -10.12074 -9.96949 -9.72413 -9.67498 -9.52784 -8.94341 -8.91101 -8.42409 -7.03632 -5.82364 -3.12709 -0.33471 0.16955 1.42162 2.19362 2.89567 3.10502 3.40580 3.45872 3.47635 3.62486 3.72614 3.91544 4.07262 4.25029 4.28379 4.40160 4.54238 4.73786 4.88922 5.11761 5.16630 5.18016 5.28194 5.31982 5.42004 5.49451 5.58804 5.62461 5.65781 5.74065 5.84848 5.92077 6.04781 6.08610 6.15228 6.23835 6.37905 6.45865 6.59723 6.62911 6.68704 6.92990 7.21686 7.46755 7.64193 7.65728 8.14287 8.34953 9.46453 10.00802 10.35613 11.39840 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.020723 B = 0.002776 C = 0.002525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.835104 B =10083.987409 C =11084.505035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.123 3.877 3 H 0.081 0.919 4 C 0.177 3.823 5 H 0.068 0.932 6 N -0.714 5.714 7 C -0.243 4.243 8 H 0.072 0.928 9 C -0.010 4.010 10 N -0.930 5.930 11 Si 0.908 3.092 12 H -0.289 1.289 13 H -0.291 1.291 14 H -0.281 1.281 15 C -0.160 4.160 16 C 0.101 3.899 17 N -0.581 5.581 18 C 0.572 3.428 19 O -0.533 6.533 20 C 0.150 3.850 21 C -0.130 4.130 22 C -0.039 4.039 23 C -0.157 4.157 24 C 0.158 3.842 25 N -0.485 5.485 26 C 0.087 3.913 27 C -0.133 4.133 28 C 0.149 3.851 29 N -0.439 5.439 30 H 0.050 0.950 31 H 0.072 0.928 32 H 0.061 0.939 33 H 0.386 0.614 34 H 0.256 0.744 35 H 0.073 0.927 36 H 0.075 0.925 37 H 0.063 0.937 38 H 0.097 0.903 39 H 0.156 0.844 40 H 0.153 0.847 41 H 0.168 0.832 42 H 0.162 0.838 43 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.268 -11.555 -22.443 25.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.020 3.980 3 H 0.099 0.901 4 C 0.065 3.935 5 H 0.086 0.914 6 N -0.354 5.354 7 C -0.374 4.374 8 H 0.090 0.910 9 C -0.207 4.207 10 N -0.578 5.578 11 Si 0.739 3.261 12 H -0.217 1.217 13 H -0.218 1.218 14 H -0.207 1.207 15 C -0.201 4.201 16 C -0.022 4.022 17 N -0.312 5.312 18 C 0.358 3.642 19 O -0.409 6.409 20 C -0.005 4.005 21 C -0.151 4.151 22 C -0.067 4.067 23 C -0.161 4.161 24 C -0.015 4.015 25 N -0.193 5.193 26 C -0.057 4.057 27 C -0.153 4.153 28 C 0.022 3.978 29 N -0.151 5.151 30 H 0.070 0.930 31 H 0.091 0.909 32 H 0.080 0.920 33 H 0.220 0.780 34 H 0.066 0.934 35 H 0.092 0.908 36 H 0.094 0.906 37 H 0.082 0.918 38 H 0.115 0.885 39 H 0.174 0.826 40 H 0.170 0.830 41 H 0.185 0.815 42 H 0.179 0.821 43 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 0.501 -11.994 -22.070 25.123 hybrid contribution -0.274 0.748 0.789 1.122 sum 0.226 -11.245 -21.281 24.070 Atomic orbital electron populations 1.22045 0.94656 1.01693 1.02844 1.22088 0.94613 0.97062 0.84283 0.90119 1.21249 0.93754 0.91544 0.86971 0.91423 1.42347 1.79280 1.11873 1.01927 1.19210 1.38405 0.96902 0.82882 0.90979 1.24764 1.01949 0.95853 0.98102 1.69661 1.51131 1.04629 1.32356 0.86180 0.77684 0.77272 0.84967 1.21669 1.21754 1.20689 1.23680 1.01131 1.01637 0.93676 1.22774 0.95940 0.87077 0.96440 1.48434 1.50212 1.28235 1.04369 1.17502 0.81177 0.84245 0.81325 1.90780 1.40238 1.26852 1.83061 1.21679 0.93245 0.91845 0.93708 1.21842 1.00145 1.01523 0.91547 1.21447 0.92867 0.91836 1.00517 1.19960 1.01787 0.98693 0.95646 1.23244 0.90439 0.88658 0.99173 1.67495 1.14108 1.16624 1.21033 1.22286 0.97193 0.99113 0.87096 1.21836 0.97521 0.93793 1.02156 1.19025 0.95628 0.94766 0.88419 1.68303 1.07860 1.04226 1.34704 0.93046 0.90891 0.91976 0.77995 0.93371 0.90813 0.90615 0.91836 0.88508 0.82633 0.82954 0.81479 0.82128 0.83176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.57 9.10 37.16 0.34 -2.23 16 2 C 0.12 2.19 3.21 -66.96 -0.21 1.98 16 3 H 0.08 1.60 7.72 -51.93 -0.40 1.20 16 4 C 0.18 3.40 3.13 -66.10 -0.21 3.19 16 5 H 0.07 1.30 7.80 -51.93 -0.41 0.90 16 6 N -0.71 -17.30 5.22 -51.66 -0.27 -17.57 16 7 C -0.24 -6.50 9.96 -15.06 -0.15 -6.65 16 8 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 9 C -0.01 -0.29 5.50 -17.43 -0.10 -0.38 16 10 N -0.93 -27.60 13.06 55.49 0.72 -26.87 16 11 Si 0.91 21.91 29.55 -169.99 -5.02 16.88 16 12 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 13 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 14 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 15 C -0.16 -2.69 6.78 -24.46 -0.17 -2.85 16 16 C 0.10 1.45 5.94 -2.41 -0.01 1.44 16 17 N -0.58 -9.37 3.06 -163.79 -0.50 -9.87 16 18 C 0.57 9.10 7.64 -12.09 -0.09 9.01 16 19 O -0.53 -9.58 15.31 5.37 0.08 -9.50 16 20 C 0.15 1.97 6.73 -82.89 -0.56 1.41 16 21 C -0.13 -1.32 9.54 -39.41 -0.38 -1.70 16 22 C -0.04 -0.29 9.92 -39.28 -0.39 -0.68 16 23 C -0.16 -1.41 5.75 -106.74 -0.61 -2.02 16 24 C 0.16 1.20 11.05 -16.99 -0.19 1.01 16 25 N -0.48 -4.39 10.30 -13.18 -0.14 -4.53 16 26 C 0.09 0.70 11.05 -17.99 -0.20 0.50 16 27 C -0.13 -1.19 10.08 -39.33 -0.40 -1.59 16 28 C 0.15 1.62 6.63 -84.86 -0.56 1.06 16 29 N -0.44 -5.49 6.54 -7.49 -0.05 -5.54 16 30 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 32 H 0.06 1.05 6.88 -51.93 -0.36 0.69 16 33 H 0.39 10.08 7.56 -40.82 -0.31 9.77 16 34 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 35 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 36 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 38 H 0.10 1.34 5.86 -51.93 -0.30 1.03 16 39 H 0.16 1.45 7.60 -52.48 -0.40 1.05 16 40 H 0.15 0.55 8.06 -52.49 -0.42 0.13 16 41 H 0.17 0.67 8.06 -52.49 -0.42 0.25 16 42 H 0.16 0.86 8.06 -52.49 -0.42 0.44 16 43 H 0.15 1.13 8.06 -52.48 -0.42 0.71 16 LS Contribution 358.89 15.07 5.41 5.41 Total: -1.00 -32.36 358.89 -9.18 -41.53 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: -5.53 Total: 8.55 kcal Atomic # 6 Polarization: 5.38 SS G_CDS: -3.88 Total: 1.50 kcal Atomic # 7 Polarization: -64.14 SS G_CDS: -0.23 Total: -64.37 kcal Atomic # 8 Polarization: -9.58 SS G_CDS: 0.08 Total: -9.50 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.36 -9.18 -41.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987064697.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.493 kcal (2) G-P(sol) polarization free energy of solvation -32.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.533 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds