Wall clock time and date at job start Tue Mar 31 2020 14:43:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.99765 * 2 1 4 4 C 1.54315 * 109.88675 * 121.10011 * 2 1 3 5 5 H 1.09004 * 110.72052 * 23.25076 * 4 2 1 6 6 N 1.46491 * 110.72533 * 259.97460 * 4 2 1 7 7 C 1.36939 * 120.00320 * 154.99814 * 6 4 2 8 8 H 1.07997 * 119.99871 * 359.97438 * 7 6 4 9 9 C 1.38812 * 119.99807 * 180.02562 * 7 6 4 10 10 N 1.31615 * 120.00570 * 359.97438 * 9 7 6 11 11 Si 1.86807 * 119.99781 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.47074 * 89.99830 * 11 9 7 13 13 H 1.48497 * 109.46994 * 210.00084 * 11 9 7 14 14 H 1.48498 * 109.46886 * 329.99636 * 11 9 7 15 15 C 1.55159 * 102.94291 * 141.60707 * 4 2 1 16 16 C 1.55132 * 101.48684 * 324.33773 * 15 4 2 17 17 N 1.47025 * 109.87892 * 238.91276 * 2 1 3 18 18 C 1.34777 * 125.65000 * 61.60590 * 17 2 1 19 19 O 1.21493 * 119.99885 * 359.97438 * 18 17 2 20 20 C 1.48374 * 120.00079 * 180.27297 * 18 17 2 21 21 C 1.40215 * 119.22079 * 179.45179 * 20 18 17 22 22 C 1.36646 * 119.90462 * 179.71867 * 21 20 18 23 23 C 1.40556 * 118.10803 * 0.53976 * 22 21 20 24 24 C 1.40398 * 122.05647 * 179.70139 * 23 22 21 25 25 N 1.31248 * 119.87293 * 180.02562 * 24 23 22 26 26 C 1.32597 * 122.68128 * 0.02562 * 25 24 23 27 27 C 1.36097 * 121.99703 * 359.97438 * 26 25 24 28 28 C 1.40947 * 118.77060 * 0.02562 * 27 26 25 29 29 N 1.31982 * 119.21727 * 359.72192 * 20 18 17 30 30 H 1.08994 * 109.47386 * 179.63806 * 1 2 3 31 31 H 1.09007 * 109.47215 * 299.63587 * 1 2 3 32 32 H 1.09006 * 109.47748 * 59.63282 * 1 2 3 33 33 H 0.97003 * 120.00152 * 334.99775 * 6 4 2 34 34 H 0.96995 * 120.00197 * 180.02562 * 10 9 7 35 35 H 1.09005 * 111.00089 * 82.57647 * 15 4 2 36 36 H 1.08999 * 111.00459 * 206.39017 * 15 4 2 37 37 H 1.09001 * 110.49739 * 278.45195 * 16 15 4 38 38 H 1.09000 * 110.34355 * 156.05515 * 16 15 4 39 39 H 1.08003 * 120.04464 * 0.02562 * 21 20 18 40 40 H 1.07996 * 120.94098 * 180.26459 * 22 21 20 41 41 H 1.08002 * 120.06405 * 0.02562 * 24 23 22 42 42 H 1.08000 * 119.00329 * 180.02562 * 26 25 24 43 43 H 1.08005 * 120.61890 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0549 -0.7496 1.2425 5 1 1.3052 -1.4461 1.6180 6 7 2.4555 0.1958 2.2874 7 6 2.4583 -0.1949 3.5999 8 1 2.1648 -1.1999 3.8647 9 6 2.8375 0.7012 4.5899 10 7 3.1947 1.9261 4.2673 11 14 2.8420 0.1679 6.3803 12 1 4.1724 -0.3938 6.7261 13 1 2.5593 1.3404 7.2466 14 1 1.7978 -0.8666 6.5912 15 6 3.2876 -1.5143 0.6921 16 6 2.8099 -1.8824 -0.7372 17 7 2.0299 -0.7139 -1.1841 18 6 1.8072 -0.3617 -2.4658 19 8 1.1415 0.6227 -2.7184 20 6 2.3695 -1.1800 -3.5684 21 6 2.1180 -0.8051 -4.8959 22 6 2.6339 -1.5453 -5.9222 23 6 3.3999 -2.6792 -5.6011 24 6 3.9637 -3.5018 -6.5893 25 7 4.6714 -4.5508 -6.2410 26 6 4.8859 -4.8816 -4.9750 27 6 4.3833 -4.1499 -3.9434 28 6 3.6116 -3.0071 -4.2350 29 7 3.0901 -2.2465 -3.2764 30 1 -0.3634 -1.0276 -0.0065 31 1 -0.3634 0.5082 0.8933 32 1 -0.3635 0.5195 -0.8867 33 1 2.7188 1.0986 2.0496 34 1 3.4600 2.5521 4.9591 35 1 4.1654 -0.8688 0.6601 36 1 3.4856 -2.4108 1.2796 37 1 2.1801 -2.7717 -0.7119 38 1 3.6654 -2.0409 -1.3937 39 1 1.5216 0.0702 -5.1069 40 1 2.4542 -1.2694 -6.9508 41 1 3.8154 -3.2719 -7.6341 42 1 5.4781 -5.7578 -4.7558 43 1 4.5722 -4.4395 -2.9202 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987064697.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:43:27 Heat of formation + Delta-G solvation = 41.182086 kcal Electronic energy + Delta-G solvation = -26989.247737 eV Core-core repulsion = 23227.377463 eV Total energy + Delta-G solvation = -3761.870274 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.42963 -41.21198 -39.29465 -38.51648 -35.99597 -34.81303 -33.55690 -32.73783 -32.14928 -31.48910 -30.74255 -27.04433 -26.78707 -25.36210 -24.79617 -23.99731 -23.48680 -21.90600 -20.88654 -19.60117 -19.22712 -18.63669 -18.30239 -17.52677 -17.07466 -16.61531 -16.53271 -15.93501 -15.74234 -15.50594 -15.39416 -15.36648 -14.90288 -14.60875 -14.41148 -14.22939 -14.00544 -13.80242 -13.59603 -13.40035 -13.24924 -13.08558 -12.89558 -12.64750 -12.55179 -12.16501 -12.13162 -11.79396 -11.75689 -11.67324 -11.34918 -10.98233 -10.79991 -10.47455 -10.38117 -9.73964 -9.56490 -9.03322 -7.94417 -5.24625 -1.06951 -0.53413 0.74661 1.29646 1.49131 1.50582 1.58920 1.70750 2.17675 2.56436 2.72366 2.98820 3.34417 3.38353 3.42299 3.47512 3.61171 3.70482 3.73234 3.78771 3.98808 4.02223 4.17315 4.27978 4.34202 4.40167 4.51221 4.55615 4.64296 4.66822 4.75853 4.82661 4.86690 4.92279 5.01487 5.03520 5.19314 5.20688 5.27062 5.34400 5.41493 5.53767 5.57143 6.25367 6.33325 6.44407 6.86727 6.91470 7.32262 8.03235 8.27822 9.29085 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.020723 B = 0.002776 C = 0.002525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.835104 B =10083.987409 C =11084.505035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.129 3.871 3 H 0.052 0.948 4 C 0.173 3.827 5 H 0.074 0.926 6 N -0.727 5.727 7 C -0.237 4.237 8 H 0.083 0.917 9 C -0.075 4.075 10 N -0.971 5.971 11 Si 0.974 3.026 12 H -0.287 1.287 13 H -0.299 1.299 14 H -0.267 1.267 15 C -0.151 4.151 16 C 0.115 3.885 17 N -0.587 5.587 18 C 0.569 3.431 19 O -0.561 6.561 20 C 0.129 3.871 21 C -0.146 4.146 22 C -0.009 4.009 23 C -0.165 4.165 24 C 0.170 3.830 25 N -0.504 5.504 26 C 0.092 3.908 27 C -0.148 4.148 28 C 0.128 3.872 29 N -0.456 5.456 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.056 0.944 33 H 0.372 0.628 34 H 0.250 0.750 35 H 0.053 0.947 36 H 0.088 0.912 37 H 0.080 0.920 38 H 0.107 0.893 39 H 0.159 0.841 40 H 0.201 0.799 41 H 0.208 0.792 42 H 0.185 0.815 43 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.423 -14.133 -24.835 28.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.025 3.975 3 H 0.070 0.930 4 C 0.063 3.937 5 H 0.092 0.908 6 N -0.366 5.366 7 C -0.369 4.369 8 H 0.101 0.899 9 C -0.267 4.267 10 N -0.621 5.621 11 Si 0.803 3.197 12 H -0.214 1.214 13 H -0.226 1.226 14 H -0.191 1.191 15 C -0.192 4.192 16 C -0.007 4.007 17 N -0.318 5.318 18 C 0.356 3.644 19 O -0.440 6.440 20 C -0.024 4.024 21 C -0.167 4.167 22 C -0.037 4.037 23 C -0.169 4.169 24 C -0.003 4.003 25 N -0.212 5.212 26 C -0.051 4.051 27 C -0.168 4.168 28 C 0.000 4.000 29 N -0.168 5.168 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.204 0.796 34 H 0.059 0.941 35 H 0.072 0.928 36 H 0.107 0.893 37 H 0.098 0.902 38 H 0.125 0.875 39 H 0.177 0.823 40 H 0.218 0.782 41 H 0.224 0.776 42 H 0.202 0.798 43 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 0.646 -14.638 -24.490 28.539 hybrid contribution -0.284 1.447 1.337 1.991 sum 0.362 -13.191 -23.153 26.650 Atomic orbital electron populations 1.21935 0.93705 1.02435 1.02096 1.21802 0.95274 0.95631 0.84830 0.92974 1.21410 0.94890 0.91018 0.86394 0.90841 1.42503 1.79634 1.12084 1.02416 1.19621 1.36285 0.97039 0.83913 0.89924 1.25578 1.02897 0.96053 1.02202 1.69829 1.53300 1.05860 1.33160 0.85135 0.77881 0.76724 0.79977 1.21448 1.22628 1.19120 1.23509 0.99034 1.01248 0.95364 1.22742 0.96385 0.86859 0.94693 1.48470 1.50597 1.28511 1.04186 1.18034 0.80538 0.84142 0.81667 1.90747 1.41513 1.28183 1.83560 1.21333 0.94963 0.92523 0.93630 1.21920 1.01327 1.02487 0.90920 1.21925 0.89979 0.89824 1.01963 1.20235 1.02058 0.99428 0.95213 1.23878 0.88567 0.87308 1.00567 1.67601 1.14878 1.17404 1.21348 1.22686 0.96407 0.99341 0.86695 1.21981 0.98036 0.93754 1.03006 1.19375 0.96129 0.95194 0.89310 1.68100 1.08382 1.04433 1.35925 0.91475 0.91831 0.92446 0.79642 0.94078 0.92766 0.89324 0.90157 0.87504 0.82302 0.78220 0.77571 0.79784 0.82436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.88 9.10 71.98 0.66 -4.22 16 2 C 0.13 4.75 3.21 45.34 0.15 4.89 16 3 H 0.05 2.21 7.72 -2.39 -0.02 2.19 16 4 C 0.17 6.72 3.13 46.18 0.14 6.87 16 5 H 0.07 2.79 7.80 -2.38 -0.02 2.77 16 6 N -0.73 -36.20 5.22 -317.35 -1.66 -37.85 16 7 C -0.24 -12.77 9.96 84.03 0.84 -11.93 16 8 H 0.08 4.20 7.83 -2.91 -0.02 4.17 16 9 C -0.08 -4.25 5.50 84.86 0.47 -3.79 16 10 N -0.97 -59.42 13.06 21.65 0.28 -59.13 16 11 Si 0.97 45.50 29.55 68.60 2.03 47.53 16 12 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 13 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 14 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 15 C -0.15 -5.05 6.78 32.07 0.22 -4.83 16 16 C 0.12 3.26 5.94 86.93 0.52 3.78 16 17 N -0.59 -19.15 3.06 -790.41 -2.42 -21.57 16 18 C 0.57 18.40 7.64 86.94 0.66 19.07 16 19 O -0.56 -20.81 15.31 -3.69 -0.06 -20.87 16 20 C 0.13 3.31 6.73 42.30 0.28 3.60 16 21 C -0.15 -2.74 9.54 22.38 0.21 -2.53 16 22 C -0.01 -0.11 9.92 22.46 0.22 0.11 16 23 C -0.17 -2.46 5.75 -21.24 -0.12 -2.58 16 24 C 0.17 1.89 11.05 85.31 0.94 2.84 16 25 N -0.50 -7.49 10.30 -195.62 -2.02 -9.51 16 26 C 0.09 1.25 11.05 84.08 0.93 2.18 16 27 C -0.15 -2.39 10.08 22.44 0.23 -2.16 16 28 C 0.13 2.56 6.63 40.58 0.27 2.83 16 29 N -0.46 -10.99 6.54 -177.60 -1.16 -12.16 16 30 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 31 H 0.06 2.25 8.14 -2.38 -0.02 2.23 16 32 H 0.06 1.99 6.88 -2.38 -0.02 1.98 16 33 H 0.37 20.38 7.56 -92.71 -0.70 19.68 16 34 H 0.25 14.92 8.31 -92.71 -0.77 14.15 16 35 H 0.05 2.03 8.14 -2.38 -0.02 2.01 16 36 H 0.09 2.73 8.14 -2.39 -0.02 2.71 16 37 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 38 H 0.11 2.89 5.86 -2.39 -0.01 2.87 16 39 H 0.16 2.80 7.60 -2.91 -0.02 2.78 16 40 H 0.20 0.32 8.06 -2.91 -0.02 0.30 16 41 H 0.21 0.51 8.06 -2.91 -0.02 0.49 16 42 H 0.19 1.46 8.06 -2.91 -0.02 1.44 16 43 H 0.16 2.16 8.06 -2.91 -0.02 2.14 16 Total: -1.00 -72.45 358.89 1.96 -70.49 By element: Atomic # 1 Polarization: 28.58 SS G_CDS: 0.35 Total: 28.93 kcal Atomic # 6 Polarization: 7.52 SS G_CDS: 6.61 Total: 14.13 kcal Atomic # 7 Polarization: -133.24 SS G_CDS: -6.97 Total: -140.22 kcal Atomic # 8 Polarization: -20.81 SS G_CDS: -0.06 Total: -20.87 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.53 kcal Total: -72.45 1.96 -70.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987064697.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.674 kcal (2) G-P(sol) polarization free energy of solvation -72.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.492 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds